Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  ----------->GT1                                <-----                                           --------->YAB1             ----------->GT1          ------                      <<<<<<<<<TBF1 ---------->DOF2                 ---------->DOF2 <----------DOF2   cacttgcgcttgtaatcgctcttcttcttcttaaaaacaaaagtataatcaagttaatctctgcaaacagaaaagaaaaatgcaaactttactagattta  1272600                    --------->ICU4                --------->LBD16               --------->ANAC46                       --------->MYB46(3)            -------->ZAP1                            >>>>>>>>>>>>>>>>>LFY                   ---------          <---------WRKY18(1)                        --------->ANAC58                   --------->YAB1       <---------ICU4                  --------->ARR11(3)                              <---------ATHB12       --------->YAB1--------->YAB1    <---------ARR11(3)                              <<<<<<<<<ARR1      <---------ATHB12             ------->GAMYB --------->ANAC46                    --------->WOX13(1)     --------->ARR14(2)  ---------->DOF2<------ZmHOX2a(2)      --------->YAB1  ----------->GT1<------     <---------ARR14(2)<---------YAB1 --------->GLK1(1)      ------->TEIL      <---------ZAT6 ------- ----AHL20(2)  --------->LBD16  --------->MYB52(1)   --------->ANAC58    --------->ZAT6<<<<<<<<<ARR2 --->AHL20(2) <---------LBD16   ----------->RAV1(1)--------->MYB46(3)<-------TEIL   --------->MYB46(3)   aacagccaatcttgaccccggaattataaaagcacaacagagatcaatttcaaacaaccaatgtatcaaaattcatcactagagtaacaatcatatatat  1272700                                                                 ------------------------>ANAC81    ---------->DOF2          ----------->GT1                   --------->GLK1(1) >AHL20(2)                 ---------->DOF2                  --------->LBD16                     <---- ---AHL20(2)           ------->GAMYB                    ------->TEIL                       ---------- -->AHL20(2)        ----------->RAV1(1)          <---------GLK1(1)    ---------->DOF2 ----------->GT1   ataagagaaagtaatagaacagcaacagagaaagaaaaacgagagccatcgatttctgtacccagaaatcgaaaaagagagaacgagagagcaaaaagaa  1272800                                                                                             <-------TEIL                                                                                            ---------                                                                                            ---------                                                                                           --------->ARR11(1)                                                                                           --------->ARR14(2)                                                                                           <---------GLK1(2)                                                                                           <---------ARR14(2)                                                                                          --------->GLK1(1)                                                                                          --------->HSFB2a(1)                                                                                          <----------TaMYB80                                                     --------->MYB52(1)                   <---------HSFB2a(1)                                          <------NtERF2                                  ----------->ARR10                                          --------->RAP2.3(1)                           <------NtERF2                                         <---------ORA47(2)                        --------->O2                         <---------ANAC46<---------RAP2.3(1)                       --------->TGA1a                   <---------WRKY38(1)   <---------DEAR4(2)                        <---------O2                   <---------WRKY12      <---------ERF1                      --------->MYB52(1)                  --------->WRKY18(1)    ------>NtERF2------->TEIL          <---------ARR14(2)-------                 <-----------HVH21       <---------ATERF1(1)             <------ZmHOX2a(1)<---------GLK1(1)             --------->DAG2             <---------RAP2.3(3)          <---------ANAC46 <---------DEAR3(1)       --------------->AGL15            <---------RAP2.3(2)       <---------DEAR3(1)<-----------HVH21       <---------------AGL15            <---------RAP2.6(2)       --------->ANAC46 <---------TGA1a  - ------ID1  ---------->DOF2             <---------DEAR3(1)       <---------LBD16  --------->SPL7    < >DOF2----------------->AGL3           --------->ATERF1(1)   --------->GLK1(2)    ------->TEIL-------   gacgaattaccaaaaaaagggtcaatggagggaagactgaaggcggcgaaagaatgaacggcgattctacggcgaggagaaacggacgtcggagattcgc  1272900    --------->ALFIN1  --------->ALFIN1 <-------MYC3                                         <----------DOF2 ------->MYC3                           --------->ANAC55(2) >CCA1(2)                               --------->ANAC58 >ARR14(1)                              --------->ANAC46 -->ANAC58                    <---------ARR14(2)   <---------AHL20(2)  --------->At5g28300 -------->TGA1a           --------->At5g28300<---------ATHB12         <----------DOF2               < ---------TGA1a          ----------->GT1--------->ANAC58 <---------TOE2(3)            <-------------- -->ANAC58        <------ZmHOX2a(1)  <---------SPL7<-----------GT1  *TSS    <-----------GT1  <-------   aaacgtgtgtgtgtgtttgaggagaaacagtgaattcgacttacgaaatcaatttactttaggtttatatcgctgtaatttccattttttcgattaaggc  1273000                                                                                            <--------ATHB1                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                            <--------                                              --------->MYB46(3)                           --------->ICU4                                       ------>MYB46(1)                                     <---------YAB1                                       -------->P                                        --------->YAB1                                       ------>MYB83                                     <---------AHL20(2)                                     ------->GAMYB                                      <---------YAB1                                     --------->DEAR3(1)                                <---------AHL20(1)                                 --------->WRKY38(1)                                   --------->AHL20(2)                                 --------->WRKY12                                      --------->AHL20(1)                                --------->DOF5.7(2)<----------DOF2              ----------->GT1                     --------->LBD16--------->DEAR3(2)                        <---------LBD16 ------------CBF    --------->LBD16 --------->MYB46(3)              <---------ZAT14    <---------AHL20(2) ---AGL1           <---------LBD16<---------DOF5.7(2)               --------->ZAT14   --------->YAB1 --TOE2(3)    <---------AHL20(2)<---------MYB52(1)<---------DAG2<-----------GT1 --------->LBD16   aaaattggaaaacgaattaatcccggtttgagccgttaaccgacctgaacaaccttttccatttttctactatacagttttccggttaatataataattt  1273100                                                                       --------->TOE2(3)                                                                       --------->YAB1     --------->TOE2(3)                                               --------->GLK1(2) -ICU4                                         --------->TOE2(3)     <---------ARR11(1)             < >ATHB51                     --------->TOE2(3)<---------YAB1         --------->ARR14(2)          ---- >AHL20(2)                 <-----------GT1   <---------At5g28300     <---------ARR14(2)  <---------YAB1 -AHL20(2)       ----------->GT1            <-----------GT1          ------->TEIL   ------->TEIL ----   gtttctagcttaataaactcagtaaaatataacttaatacaaaaatttaccatagaaaaattctaactacgaatcttaatacaatgtatttttgattaca  1273200                                                         --------->AHL20(2)            ----------->GT1                              <---------AHL20(2)        ---------->DOF2                            <---------ATHB12  --------->bZIP60(1)                             --------->ANAC46                             <-----  <---------bZIP60(1)             <---------AHL20(2)     <---------YAB1                    --------->GLK1(2) -----------GT1        <-----------GT1            --------->ANAC58                        --------->ARR14(2) ----->ANAC46  --------->CCA1(2)  <---------YAB1  --------->ANAC58 --------->YAB1         <---------GLK1(2) ----->ANAC55(1) <---------AHL20(2)          <-----------GT1      <---------ATHB12        <---------ARR14(2)   tgtaacatcacaaagggatataattttacaaatgtttttattgaaaaataccactcaatataaatgaaatcatcttcaaattttgttacccagattcctt  1273300                                                                       --------->ANAC55(1)                                                                       <---------ANAC55(2)       <---                                          ------------------------>ANAC81           <-----------GT1                                   --------->ZAT6                      --------->ANAC46--------->TOE1(3)               --------->ZAT6 --------->TOE1(3)                        --------->ANAC55(2)       ----      ------>ZmHOX2a(1)       <----------DOF2                       <---------ARR14(2) <---------DAG2 -----DOF2 <---------MYB52(2) --------->TOE2(3)    ----------->GT1  --------->ARR14(2) --------->TOE2(3)   ttctaatcctgcaattaacacaaaaacaaaaactttaacaccaaaattaagagaagaaaaacaaaattagtatacgtattgcgaaattaccttatcgtcc  1273400                                                                                 --------->ANAC46                                                                                 ------->GAMYB                                                                                 --------->DEAR3(1)                                                                                 --------->RAP2.6(2)                                                                                --------->MYB46(3)                                                                               <---------At5g28300                                                                              <---------DOF5.7(2)                                                                            --------->DOF5.7(2)                                                                           --------->TOE2(3)                                                                          <---------ANAC46                                                                         <------NtERF2                                                                        ------>NtERF2                                                                       --------->DEAR3(1)                                                 <------ZmHOX2a(2)     <---------DEAR3(1)                                                --------->ARR11(3)     ----------->HVH21                                                <---------ARR11(3)    --------->RAP2.3(1)                                           =============HOX2a_HOX2a  --------->LBD16                                           <------ZmHOX2a(1)         --------->ANAC46               -      <-----------GT1                ------>ZmHOX2a(1)              <---------ATERF1(2)      ------>ZmHOX2a(1)    --------->GLK1(1)                --------->At4g35610            --------->ATERF1(2)      ======== -------DOF2                         <---------At4g35610          --------->MYB52(1)         ======== -->ZmHOX2a(1)      --------->GLK1(2)===================HOX2a_HOX2a--------->DEAR3(2)     ------>NtERF2   tttgggatttacaatctgagagaatatttcggtattgtcctctgaggagagatcactcacatcatctctaccggcgacgttaaccgccatgcctcctcta  1273500  Previous    Next  AGI:  At3g04680.1    Description:  pre-mRNA cleavage complex family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39930.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14899.1); contains InterPro domain Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655) Range:  from: 1269859    to: 1272968    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g04690.1    Description:  protein kinase family protein. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G28680.1); similar to FER (FERONIA), kinase/ protein kinase [Arabidopsis thaliana] (TAIR:AT3G51550.1); similar to FERONIA receptor-like kinase [Arabidopsis lyrata] (GB:ABT18096.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40132.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44912.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) Range:  from: 1273392    to: 1275944    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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