Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     ----------->RAV1(1)                         --------->AHL20(2)                   --------->RAP2.6(2)                         <---------AHL20(2)                --------->ANAC58                            --------->WOX13(1)                --------->ANAC46                         ------->TEIL       <---------ANAC58                --------->ANAC58                      <---------ATHB12      <---------ANAC46     ----            --------->ARR14(2)                   <------ZmHOX2a(2)          <---------ANAC58   ------            <---------ARR14(2)                   --------->CCA1(2)       ------->GAMYB         ------        <---------ATHB12                        --------->AGP1<---------ATHB12             --------->GLK1(1)   --------->TOE2(3)     --------->YAB1         --------->ARR11(3)    --------->MYB52(1)   <---------GLK1(1)   --------->TOE1(3)   --------->GLK1(2)        <---------ARR11(3) --------->YAB1    --------->YAB1   taaaaccctaatcaaatccagccacaatcttgaggctctctacaagttgagatccaatgaaccaattaaacataactgacttggtattcatagatttcca  1238100                                                                     ================HOX2a_HOX2a                                                                     ------>ZmHOX2a(2)                                                                    <------ZmHOX2a(2)                                                                    =================HOX2a_HOX2a                                                                    --------->CCA1(2)                                                                   <---------ARR14(2)                                                                   <---------ARR11(3)                                                                   --------->ARR14(2)                                                                   <---------AGP1                                    --------->ANAC46               <-----------ARR10   --------->REM1(2)  <-----------GT1       <---------HSFB2a(2)    --------->AGP1 ----->ANAC46       --------->AHL20(2)  --------->GLK1(1)          --------->ARR11(3) --->HSFB2a(2) --------->YAB1       --------->ANAC58           --------->YAB1 --->ANAC46   <---------ATHB12      --------->ANAC58   ---------->DOF2        ------>ZmHOX2a(1)    --   caacgcgtagagaccaatgagattaaacaactccaaacacgcatacccagaagaaggcaaaggaatcaagatctatgttcctcgatattcgtagtactga  1238200                                           <------MYB83                                           <------MYB46(1)                                           ----------->GT1           <----------DOF2           --------->LBD16       --------->DEAR3(1)           --------->LBD16                        --------->ANAC46       ------->GAMYB                <---------LBD16                     <-------TEIL       --------->RAP2.6(2)         <-----------RAV1(2)                 --------->CCA1(2)      --------->MYB46(3)           <---------LBD16           ---------->DOF2      --------->DEAR3(2)     <---------AHL20(2)            --------->ANAC58--------->ANAC58        --    --------->ARR14(2)      <---------AHL20(2)             --------->ANAC58--------->ANAC58        <- -------->DOF2              --------->AHL20(2)   --------->YAB1     <---------TOE2(3)      ----------   gaaaagaaaccgcctttgagttttttttttttaaattccaggggaaggtaatcagagaaaaacgaaagctaagattcaagccaatagaatagagaaagaa  1238300         ------->TEIL         --------->GLK1(2)         <---------ARR11(1)         --------->ARR14(2)                           ------->GAMYB         <---------ARR14(2)                          --------->ANAC58     --------->HSFB2a(2)                 <---------------AGL15              <----------DOF2     <---------HSFB2a(2)                 --------------->AGL15           --------->ARR11(3) ------->ANAC46                         ----------------->AGL3           <---------ARR11(3) --------ALFIN1   ----------->GT1       ----------------->AGL2   --------->WOX13(1)--------->ANAC46 >DOF2  <---------CCA1(2)   ---------->DOF2          --------->ANAC58----------->HVH21   cacacctctcgaatctagtaagataaataagaaagacccatctccatttgtagcaacgaaatcgagtcaatctgacatctttttcacagaagttggagaa  1238400                                                     <----------DOF2                                                   <------ZmHOX2a(2)                                                  --------->ARR11(3)                                                  --------->ARR14(2)                                                  <---------ARR14(2)                                                  <---------AGP1                                                  <---------ARR14(3)                                                  <-----------ARR10                                          --------->ABI4(2)                                          <---------MYB46(3)                <---------GLK1(2)                                         --------->ALFIN1                   --------->ARR14(2)                                         <---------AtMYB61                  <---------ARR14(2)                                         <---------DEAR3(1)              --------->ANAC55(2)                                        <---------MYB52(1)<---------HSFB2a(2)                                       --------->LBD16    <---------LBD16<---------ANAC58                                      <---------DEAR3(1)  --------->HSFB2a(2)--------->GLK1(1)                                      <---------MYB46(3) <---------LBD16 <---------ANAC58                                     <---------LBD16------>ZmHOX2a(2)    <---------ANAC46                                     --------->SPL7<---------RVE1(1)    <---------LBD16                                   <---------SPL7 <---------ARR11(3) <-------GAMYB                                  <------MYB83    --------->AGP1     <---------At4g35610               ---------->DOF2    <------MYB46(1)<---------CCA1(2)   --------->At4g35610        --------->ATHB12         <---------AtMYB61--------->ARR14(3)<-----------RAV1(1)         -----       --------->ICU4           <--------P--------->MYB55(2)<---------MYB52(1)   *TSS         -------     ----------->GT1     --------->MYB52(1)   <------NtERF2--------->LBD16--------->LBD16   <--------   acagaagaagtgattagaaaagagaagaaaccgagttggtccggtggtggcagatcttttccgggagtttcagttgcggattttcagacttgagtcaaca  1238500                                           ------------>CBF                                          --------->ANAC58                                          --------->ANAC58                                <---------DAG2                          --------->At4g35610       --------->LBD16                             <----                          --------->ZAT2---------->DOF2                                        <-----                          <---------At4g35610      --------->HSFB2a(2)   <---------AHL20(2)    <----- ---->YAB1               ----------->RAV1(1)       <---------HSFB2a(2)   --------->AHL20(2)<--------- ----->CBF          ---------->DOF2---------->ID1  <---------ANAC46     --------->YAB1     <---------DAG2 -WRKY38(1)    <----------ID1   <----------DOF2   <---------LBD16   <-------TEIL<---------AtMYB61----   atattcaaagtttttttaagacaaaagcagcagacttttcgcttaagcaatttccggagagttgctcaagtccataaaaatggtggtgtttcactttaag  1238600                             --------->CCA1(2)                           --------->YAB1                                                     <------                         <---------TOE2(3)                                                  ---------                        ---------->DOF2                                                     ---------                       --------->AHL20(2)              <---------ANAC58                   --------->YAB1 -----At4g35610     <---------------AGL15       --------->ICU4                           <---------ATHB12 ----TOE2(3)       --------------->AGL15    --------->At5g28300                        --------->WOX13(1) ----TOE1(3)       ----------------->AGL1  ----------->GT1                           <---------YAB1 -DOF2       --------->AHL20(2)           --------->ZAT6                         --------->TOE2(3) ----->TOE1(3)     <---------------AGL15<-----------GT1<---------ANAC58       ----------->RAV1(1)  <-   cttagatgtcaacaaaaaattcccattaaagataagaatttttaacagtaatttttggcttcacataagttatagcattccaacattatcaatcaagaaa  1238700                                                          <---------YAB1                                                      <---------AHL20(2)                                                    --------->AHL20(2)                                                    <---------AHL20(2)    <---------GLK1(1)                                                    <---------YAB1        --------->GLK1(1) ---ARR11(3)                                       --------->TOE2(3)      --------->ARR14(2) >ANAC58                                           --------->YAB1     --------->YAB1 >ANAC58             --------->DAG2              --------->ICU4   --------->AHL20(2) ----------GT1      ---------->DOF2           <---------ATHB12--------->AHL20(2)   tttacaagttgacaacttgacataaagttaccaagaattttaaactaaatcaatattaatatgaataaataaacagaattctcaaatgagtttttttgtt  1238800                                                                                 <---------------AGL15                                                                                 --------->YAB1                                                            <---------TOE2(3)    ====================                                                     --------------->AGL15 --------->YAB1                                                     <---------------AGL15 <--------HAHB4                              --------->MYB52(1)     ================================================                              <-----------GT1       =============================================MADS_MADS                             ----------->HVH21      ----------------->AGL3 --------->ATHB51                            <---------MYB52(2)      =================================================                           --------->ANAC58     --------->DOF5.7(2)        <---------ICU4           -                           --------->ANAC46     <---------MYB52(1)    <---------YAB1               --              <---------TOE2(3)            --------->ARR14(2)    <------MYB46(1)<---------TOE2(3) ---              <---------TOE1(3)--------->RAP2.6(3)  <-----------------AGL3--------->AHL20(2)      <-- --------->TOE2(3)         --------->ANAC58<---------ARR14(2)    <------MYB83   <---------YAB1  ----- <-----------HVH21  <---------AtMYB61     <------ZmHOX2a(1) <---------YAB1--------->ICU4        -----   cttcgtcaaatgagttaatgttttggtccaagtaacggctcataggaaccgtttactaaattaagataggttatgaataattaacataagtagaaaccga  1238900                                                     ---------->DOF2                                               <---------MYB52(2)                                    <----------DOF2--------->ANAC58                                   --------------->AGL15                                   <---------------AGL15                                  <-----------------AG             <---------AHL20(2)   ----------------->AGL1            --------->ARR11(3)    ----------------->AG       ----------->GT1            ----------------->AGL2 ===================================================MADS_MADS                     ---------->DOF2 ==================================================MADS_MADS                 <---------YAB1 ===================================================MADS_MADS              --------->YAB1 -------->MYB52(1)                <-----------------AGL2                  <---------YAB1 ------->TOE1(2)                  <-----------------AGL3                 --------->AHL20(1) ------>MYB46(3)                  ----------------->AGL3                 --------->AHL20(2) -------MYB52(2)       ---------->DOF2         --------->MYB46(3)      --------->AHL20(1) ->MYB46(1) <---------AHL20(1) <---------GLK1(1)   --------->ANAC58    <---------AHL20(1)   --------- ->MYB83    <---------ARR11(3) --------->GLK1(1) --------->MYB52(1) --------->AHL20(2)  ---------->DOF2   acaaacgaagtgtatatatttcacaaaaagagcatttccttttttagtaacaaacgaaagaaaaaccaaaaaaaatattataagaaaagaaaaagagtat  1239000  Previous    Next  AGI:  At3g04580.1    Description:  EIN4 (ETHYLENE INSENSITIVE 4); receptor. similar to ETR2 (ETHYLENE RESPONSE 2), receptor [Arabidopsis thaliana] (TAIR:AT3G23150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65024.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71332.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66907.1); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain Histidine kinase, homodimeric; (InterPro:IPR009082); contains InterPro domain Response regulator receiver; (InterPro:IPR001789); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); c Range:  from: 1235289    to: 1238481    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g04590.1    Description:  DNA-binding family protein. similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT5G28590.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72947.1); contains InterPro domain Protein of unknown function DUF296 (InterPro:IPR005175); contains InterPro domain HMG-I and HMG-Y, DNA-binding (InterPro:IPR000637) Range:  from: 1238859    to: 1241646    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version