Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    --------------->AGL15                  <---------------AGL15                ---------->DOF2                  <----------DOF2            --------->AHL20(2)                  <---------DAG2          --------->YAB1                  ==================================================MADS_MADS               <-----------GT1           <---------AHL20(2)           <---------AHL20(2)           --------->AHL20(2)           --------->AHL20(2)    <------ZmHOX2a(1)  --------------->AGL15          --------->AHL20(2)   <---------TOE2(3)    <---------------AGL15                        ----        --------->YAB1       ---------->DOF2--------->AHL20(2)                         <---------ANAC58       <---------YAB1   ============================================MADS_MADS          <---------ANAC46     --------->YAB1     --------------->AGL15<---------AHL20(2)                        <---------ANAC58   aagttatttataataaataactttttctggttaaaggatatatataataaataactaaaaagagagatagaattagcacttggctacttccttgtactgc  1216600           <------MYB83           <------MYB46(1)          <---------DEAR3(1)          --------->MYB59          --------->MYB46(2)          --------->MYB111(2)          <---------MYB46(3)          --------->MYB111(1)         <---------MYB55(1)              --------->YAB1         <--------P                     --------->ICU4       <---------ANAC46                 <---------YAB1                         -------->P      <---------AtMYB61          <-------TEIL                                --------->MYB46(3) --------->ALFIN1         <------ZmHOX2a(1)<---------YAB1                 <------ZmHOX2a(1) ------>DOF2          ---------->DOF2 --------->YAB1                ---------->DOF2   aaagtggtgaggtaggtgctacaaaaaaggatagattcagtgatgatgatgttgttcaaatatggtgaggcaaagaggaacaacctgcaaaataagaaga  1216700                                                                   ---------->ID1                                                        <-----------GT1                                                    <---------RVE1(1)                           <----              <---------AtLEC2                      <---------CCA1(1)                           -----       <----------DOF2          <---------------------WRI1     <----------DOF2                 <-----       <---------DAG2     --------->CCA1(2)        --------->ARR11(3)              <-----------------      <---------ANAC58   <---------ARR11(3)        <---------ARR11(3) <----------DOF2<----------DOF2      <---------ANAC58   --------->ARR11(3)---------->DOF2 <----------DOF2    <-----------RAV1(1)  --   gacctcttgcttttttgcaagatgagagatataagtagaagaaatcaaagtgagattttttctttctttctccttttctactgttgtcttttgtgttttt  1216800 <----------DOF2                                                           --------->YAB1 -------GT1                                                             --------->YAB1 ----->ID1                                                       <-------TEIL<---------YAB1 ------GT1                                                    --------->At4g35610 -------ANAC81               ----------->GT1                  <---------At4g35610               ----- ---->ZmHOX2a(1) --------->YAB1                         --------->AHL20(2)<---------YAB1        =====   cctcttttctactatagaatgagaagatggatagaaaaatacagacacaaatgtccatatatatagctgcataaacatcataataggtcatttatagaga  1216900                <---------O2                <---------TGA1a                <---------ANAC58                <---------ANAC46              <-----------GT1       --------->CCA1(2)      --------->At4g35610                                     <------ZmHOX2a(1)  ---------->DOF2           --------->YAB1<---------AHL20(2)                   <---------AHL20(2)  ========================bZIP_DOF       <---------AHL20(1)      ---------->DOF2---------->DOF2    <- ----->DOF2     <---------ANAC58      --------->YAB1            *TSS           --------->AHL20(2)---- =========================bZIP_DOF --------->GLK1(1)   --------->ANAC46  ----------->GT1 ---------->DOF2   aagagaaagagatgagagtcgtgagactgatcatcagaaatcatatattttccatttaagacacaaaaaaaggaagagaaattaaagaggagaaagggac  1217000                       ----------->GT1                    ---------->DOF2                                     --------->At4g35610      <-----------GT1 --------->DAG2                         ------------>CBF  ---------->DOF2 -----------CBF  ----------->TBP                            >>>>>>>>>>>>>>>>>LFY ----->ICU4  ----------->GT1--------->ZAT6                  <<<<<<<<<<<<<<<<<LFY   <----------ID1 <--   ttattgttttacacagtgtataaaaaggtaactctatagatgagacttgagagagagacagagaccaatgggtcgtctgaagaaagagacaaatatttgt  1217100                                                     --------->LBD16                                                    --------->HSFB2a(2)                                                    <---------HSFB2a(2)                                                 <---------ARR14(2)                                              <---------MYB52(1)                                             --------->LBD16                                            <---------ANAC58                    --------->ICU4                                            --------->ANAC55(2)                 <---------KAN4(1)  <-                                <---------AHL20(2) <---------LBD16              --------->KAN4(1)  --                            <----------DOF2 <---------ANAC55(2)                <---------KAN4(2)   <-           <-----------HVH21<---------DAG2  <---------ANAC58                 <------ZmHOX2a(1)     --      <-----------GT1    <-----------GT1--------->WOX13(1)              ------->MYC3              --- -------YAB1        <<<<<<<<<<GT-3b  <-----------GT1<---------ANAC46    <-------MYC3        ---------   atgattttttatctgtcactatttttcttactttttatttttcaatccgtgattccggacacaaactattagcacatgaggaataatcggattataaaga  1217200              --------->ATHB51              --------->ATHB12             --------->ICU4             <---------YAB1   <---------ICU4   --------->ATHB12   -------->ATHB1   --------->ATHB51  <---------AHL20(2)  <---------ATHB51  --------->AHL20(2)  --------->ICU4 --------AHL20(2) ------->AHL20(1) --------AHL20(1)        <---------AHL20(2) ------->AHL20(2) ----------->GT1                                        <---------TOE2(3) ------>AHL20(2)<---------WOX13(1)              ---------->DOF2          <---------TOE1(3)   -------- ->DOF2 ----------->GT1  --------->AHL20(2)   <---------YAB1           ---------->DOF2       --------   ataaattattgggttataattggttatttatatgtataagtgaatttgatgaaagagttttctacttcttggttaaaggttttcatttgtaaaccaagaa  1217300                                                                                  <-----------GT1                                                                               --------->YAB1                                                                               <---------ICU4                                                                             --------->AHL20(2)                                                                          --------->AHL20(2)                                                                        --------------->AGL15                      <---------YAB1        --------->TOE1(3)           <---------------AGL15               --------->TOE2(3) <-------TEIL      <-------MYC3        <---------ANAC55(2) ->ANAC58      --------->TOE1(3)--------->CCA1(2)  ------->MYC3      --------->AHL20(2) ->ANAC58      <---------DAG2<---------YAB1 --------->TOE2(3)----------->GT1--------->YAB1         <-   aatcgattcaaatacaaccttattctgaatgaagattcaaatacaaccttacacatgtccaacgagtgaaattacttaaaataataacgccttctcttct  1217400                                         <---------ATHB12                                       --------->WOX13(1)                                      --------->AHL20(2)                                      <---------AHL20(2)                                     <---------ATHB12                        --------->ARR11(3)                        --------->AHL20(1)            --------->ARR11(3)     --------->WOX13(1)            <---------AHL20(1)  --------->ANAC58       --------->DAG2             ---------->DOF2            --------->AHL20(1)  --------->ANAC58      ---------->DOF2   --------->AHL20(2)            <---------ARR11(3)---------->DOF2<---------ATHB12           <---------AHL20(2) --------REM1(2)        <---------AHL20(1) --------->WOX13(1)   ---------->DOF2 <---------YAB1    ---   cttcacgagtgaaatattttctgaaatatatcgaaagcaattaatcaatgaatgaataaagcgtagcaaagaaattaaaaatatcaaagcacatatcagt  1217500  Previous    Next  AGI:  At3g04510.1    Description:  similar to LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1) [Arabidopsis thaliana] (TAIR:AT5G28490.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65072.1); contains InterPro domain Protein of unknown function DUF640 (InterPro:IPR006936) Range:  from: 1215642    to: 1216964    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g04520.1    Description:  THA2 (THREONINE ALDOLASE 2); threonine aldolase. similar to THA1 (THREONINE ALDOLASE 1), aldehyde-lyase [Arabidopsis thaliana] (TAIR:AT1G08630.3); similar to THA1 (THREONINE ALDOLASE 1), aldehyde-lyase [Arabidopsis thaliana] (TAIR:AT1G08630.4); similar to THA1 (THREONINE ALDOLASE 1), aldehyde-lyase [Arabidopsis thaliana] (TAIR:AT1G08630.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO65068.1); contains InterPro domain Aromatic amino acid beta-eliminating lyase/threonine aldolase; (InterPro:IPR001597); contains InterPro domain Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424); contains InterPro domain Range:  from: 1217245    to: 1219765    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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