Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          <---------ANAC58                  --------->ARR14(2)                                               <---------ARR14(2)                  ------->TEIL                                                     --------->ARR14(2)                  <---------ARR14(2)                                            <---------ANAC46                 <---------GLK1(2)                                         <---------YAB1           <         <---------ICU4 <---------ANAC58         ---------->DOF2       <----------DOF2 <----------DOF2   ttgtctactcatcttcactgaatcttccttgtctgagaccctgaagatgaataaagaatgagtctttggaagtctttctgattcgtatactttgtttttg  1200200                               --------->YAB1                               <---------ICU4                              <---------YAB1         --------->TOE2(3)                 --------->GLK1(2)                          <---------WOX13(1)  ----------->GT1                         --------->ARR14(2)                       <---------AHL20(2)    <---------ZAT6                           <---------GLK1(2) ---------YAB1      ----------->GT1          ----------->GT1  <---------MYB52(1)      <---------ARR14(2)   ttttcattagaaatttagaagatagataattgatgatcacaaggtgagagttaaaacttaatccattacttagtctctctattctacagattctgagcaa  1200300             --------->YAB1            <---------YAB1          --------->YAB1         <-------TEIL                                                                             <--      --------->ATHB12                                                                          -----      -------->HAHB4                                                                   ---------->DOF2     <---------YAB1     ---------->DOF2                                           <---------AHL20(2)     --------->ICU4--------->ZAT14                          <----------DOF2      --------->AHL20(2) --------->AHL20(2)<---------ZAT14      --------->YAB1<-----------GT1        <---------YAB1<------ZmHOX2a(1)   aaaaaaaatgattcatcatactgtaccaaagtatcaatttgatcaaaattagtctttcacctctttccaaaatatcaatttgattaaatcaaaggacttg  1200400                                    <------ZmHOX2a(2)                                   <---------ARR11(3)                            --------->WOX13(1)                      --------->ANAC46                                                     <---------MYB52(1)                      --------->ANAC58      --------->ARR14(2)                          <-------TEIL                      --------->ANAC58      <---------ARR14(2)                    <---------MYB52(1)                 <-------TEIL      --------->ARR11(3)   ---------->DOF2          <-----------HVH21             <---------TOE2(3) --------->YAB1      --------->GLK1(1)             <---------SPL7    <- -------WOX13(1)<XXXXXXXXXXXXXXXXXXXXMIR170<---------GLK1(1)                 <-----------GT1 <------- ---->ATHB12 <---------TOE1(3)<---------ATHB12  --------->LBD16     <-----------GT1--------->SPL7<---   attgattttgtttttgaggttcacacggttcaatcaagatcatcgaaatccgaaattccaaagtgcgatttaaccgattaaaccgtccggtccattggtt  1200500                                             --------->AHL20(2)                                            <---------AHL20(2)                                       --------->LBD16        --------------->AGL15         --------->LBD16        --------->TOE2(3)             ----------->GT1    ------>ZmHOX2a(1)                 --------->ANAC46  --------------->AtSPL8             <---------LBD16 --------At4g35610               <---------ARR14(2)                                          <------- --MYB46(3)   --------->YAB1     --------->ARR14(2)                                          -------- --------RAV1(2) --------->YAB1 <----------TaMYB80              ----------->GT1  --------->ARR14(2)   caggtccttacctcatttataagaagaaggaagggtattcccgtaaataatatggaatttgatgtccagttaaaaaaactccaaataggcctctcagcta  1200600                                                                         <---------ALFIN1                                                                        <------NtERF2                                                                       --------->ABI4(1)                                                                       <---------ATERF1(1)                                                                      --------->RRTF1(2)                                                                      --------->ANAC46                                                                      --------->ATERF1(2)                                                                      --------->RRTF1(3)                                                                      --------->RAP2.6(2)                                                                      --------->DEAR3(1)                                                                      <---------ATERF1(2)                                                                      --------->RAP2.3(2)                                                                     --------->RRTF1(1)                                                                     --------->ORA47(2)                                                                     --------->ERF1                                                                     --------->RAP2.3(1)                                                                    ------->GAMYB                                                --------->LBD16     <---------ATERF1(1)                                                ------>NtERF2      --------->ANAC46                                         <----------DOF2           --------->DEAR3(1)                                      ------>ZmHOX2a(2)          <---------ALFIN1                           --------->ANAC46     *TSS            ---------->CDC5                           --------->ANAC58    --------->ANAC46 <---------WRKY38(1)                           --------->ANAC58   <---------LBD16--------->At4g35610                   --------->LBD16   <------ZmHOX2a(2)       --------->ZAT14                   ------>NtERF2     --------->GLK1(1)       <---------ZAT14<----------DOF2 --At4g35610     <---------LBD16    --------->ARR14(2)   --------->ZAT6------>NtERF2 ->At4g35610<---------CCA1(2)       <---------ARR14(2) <-----------GT1--------->RAP2.3(3)           <   aaaacaccgtttccatctctccggctctctcgccatcggatccctttctccgccatttcacactgctcaacgccgccactttccttcttcgatcgactct  1200700                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                              -------                                                                                              -------                                                                                              -------                                                                                             <-------                                                                                            ------>NtERF2                                                                                         <---------ZAT2                                                                            <-------GAMYB--------->At4g35610                                                                     <---------TGA1a     --------->ZAT2                                                                     --------->O2        <---------At4g35610                                  <---------ATHB12                   --------->TGA1a    ------>NtERF2                           <----------DOF2      <---------RVE1(1)    ================================                        <-----------GT1        <---------GLK1(2)     ===============MYC_MYB ---------               <<<<<<<<<TBF1     --------->ANAC46             =================bZIP_DOF --------->LBD16           ------>ZmHOX2a(1)    --------->WOX13(1)  <-----------GT1  <---------O2      <---------RAP2.6(2)     ------>ZmHOX2a(1)<-----------GT1          --------->ARR11(3) <----------ID1      <---------LBD16 ---------At4g35610 <----------DOF2        <------ZmHOX2a(2)  ---------->DOF2       <-----------GT1   tcatctccttctccttcttcttctttacactttccaatcaactcgatcagattttttctacttggaaagcgacgagactgttgatttttccggctgccgg  1200800                                                        --------->ALFIN1                                                  --------->ALFIN1                                                 <-------GAMYB                                                 <------NtERF2                                                 --------->ATERF1(1)                                                <---------MYB46(3)                                               <---------RAP2.6(2)                                               <---------DEAR3(1)                                               <---------DREB2C(2)                                               <---------DEAR4(1)                                               <---------ANAC58                                               <---------ANAC46                                               <---------ANAC58      <----------DOF2                         --------->ATERF1(1)       --------->At4g35610 --NtERF2                                     <------NtERF2             <---------At4g35610 --->LBD16              <---------TOE1(3)     <---------ABI4(1)    --------->ARR14(2) ----RAP2.6(3)          <---------TOE2(3)    ------>NtERF2  --------->ZAT2                     ------ -->RAP2.6(2)     <---------ARR11(3)        <---------DEAR3(1)     <---------ARR14(2)         ------- -->HSFB2a(2)     --------->ARR11(3)        --------->ALFIN1--------->At4g35610               <------ -->LBD16<---------HSFB2a(2)                ----------->HVH21     <------ZmHOX2a(1)          <------- --LBD16 --------->HSFB2a(2)                <---------AtMYB61   <---------TOE2(3)            <------- ================bZIP_DOF                --------->ALFIN1   <---------At4g35610        -------->P >MYB52(1)  <------ZmHOX2a(1)            <---------DEAR3(1) <---------ZAT2            <-----------GT1   aatcagcgcttcgaggagaagatgttagggttttcaaatggaagcggtggcggtggagttggagctgaggatttagctcaactccaatctaccatgcgcg  1200900                                                                             <---------MYB46(3)                                                                --------->ANAC46 --->ANAC46                                                     --------->ANAC58           <---------ANAC58 -->ZAT18                                <---------ANAC58    --------->ARR14(2)            <---------ANAC58 ---LBD16<---------ANAC58                <---------ANAC58    <---------ARR14(2)   --------->At4g35610 --ANAC58<---------ANAC46    <----------DOF2              --------->YAB1    --------->ALFIN1        - --ANAC58<---------ANAC58 --------->ARR11(3)    <----------DOF2 --------->ANAC58<---------ZAT18   ---   cgattgaacttgcttgctcttacattcaggtctttttttttttgcttcttctttcttcattcatatacgcataaacaagtggttcgctccattccttgtc  1201000                                     --------->At4g35610                                     <---------At4g35610 <-------GAMYB                                    --------->GLK1(2)   <---------MYB46(3)                               <---------ANAC46        --------->ALFIN1                         --------->ARR11(3)            <---------AtMYB61                         <---------AHL20(1)          --------->ALFIN1                         --------->AHL20(1)        <---------ANAC46      <-----------------AGL3  <---------LBD16      <---------ANAC58   <--------P            <---------AHL20(2)        <---------ANAC58   <---------WOX13(1)    <---------ARR11(3)    <---------ANAC58                         <---------ANAC58 ----->ZmHOX2a(1)        --------->AHL20(2)    <---------ANAC58      <---------AHL20(2) <---------ANAC46 -------->RAV1(2)    ------>ZmHOX2a(1)         --------->ALFIN1 --------->ICU4          <---------ANAC58   tcctggttgatatttttggtttcctaatatattgggggaagctgtagatgtgtgcgtgtggttgcatttatgaaattgttttttatgttttcttgtaatt  1201100  Previous    Next  AGI:  At3g04485.1    Description:  other RNA Range:  from: 1198120    to: 1200110    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g04490.1    Description:  exportin-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G38092.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65079.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAK13158.1); similar to hypothetical protein OsI_032884 [Oryza sativa (indica cultivar-group)] (GB:EAY78925.1); contains domain gb def: T27C4.14 protein (PTHR12596:SF1); contains domain EXPORTIN 4,7-RELATED (PTHR12596) Range:  from: 1200648    to: 1209875    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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