Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               --------->At4g35610                             <---------At4g35610                           ===============================RAV                           <-----------RAV1(2)                      <---------ARR14(2)                      --------->ARR14(2)                      <---------ARR11(3)                      --------->ARR11(3)                                                            <                     <---------CCA1(2)                                                           <---                    <---------MYB52(1)        --------->MYB52(1)                           <---------ICU4                   <------MYB46(1) --------->ATHB12                                       <---------YAB1                   <------MYB83   <---------YAB1                                         --------->TOE2(3) --ZAT14           <---------DEAR3(2)         ----------->RAV1(1)                       <---------ICU4 --ZAT18          --------->MYB59 --------->ICU4 ------->GAMYB<----------ID1            --------->YAB1 ->ZAT14          --------->MYB46(2) <---------WOX13(1) <-------TEIL ---------->DOF2------>ZmHOX2a(1)   ttacaaatcgaagaacaaggtcggtatcttcagatgatgattgagaaacaacagaagatgcaagagaacaaaaaagactctacttcctcatcatcaatgc  1186100              --------->At4g35610              <---------At4g35610                        --------->MYB46(3)              --------->ZAT2                            --------->ANAC58              <---------ZAT2                            -------->P          <-----------HVH21                         --------->ANAC58    --------->WRKY12                                --------->ANAC58                                <    ----------->HVH21                              --------->DAG2                       --------->At4g35610  --------->ZAT2          ------>MYB83            ---------->DOF2                       <---------ZAT14  --------->At4g35610     ------>MYB46(1)    --------------->AGL15                  --------->ARR14(2)  <---------At4g35610   --------->AtMYB61    ------>ZmHOX2a(1)                     <---------GLK1(2)> --------->GLK1(2)      --------->MYB46(3)   ======================================================== ---------GLK1(2)       <---------MYB46(2)   <---------------AGL15  --------->MYB46(3)  --------->ZAT14 ------HSFB2a(2)  --------->REM1(1)    <---------DAG2   --------->ANAC58   <---------ATHB12         -   cagaagctgacccttcagctccatcaccaaacctttcacaacctttcctccataaagcaaccaattcagaaccatcaataactcagaaactgcagaatgg  1186200                              --------->HSFB2a(2)                            ----------->RAV1(2)              ---------->DOF2 <---------HSFB2a(2)       <---------HSFB2a(2)            ---------->DOF2   --------->YAB1    <---------ARR14(2)              <--------P                      ------>ZmHOX2a(2) ---------HSFB2a(2)  --------->ARR14(2)             <-----------HVH21            <---------YAB1 >>>>>>ZML2 <------ZmHOX2a(2)<---------LBD16   --------->MYB52(1)          <---------YAB1   <-------- ===================================================MADS_MADS              --------->ICU4  --------->ARR11(3) -------->HSFB2a(2)  ------->TEIL   --------------->AGL15             <---------At4g35610  <---------ARR11(3)   ttctagcacaatggatcaaagtgaatctacttctgggactagtaatagaaaacgggttagagaagattagacatctcatgagtatgatccaaagatgttg  1186300                                                                                      <---------ATHB12                                                                              --------->ALFIN1                                                                            <---------ANAC58                                                                            =========================                                                                            <---------bZIP60(2)                                                                            <---------ANAC46                                                                            <---------O2                                                                            --------->O2                                                                            <---------ANAC58                                                                            <---------TGA1a                                                   --------->YAB1          ----------->STF1                                      <---------ZAT2                       <-----------------------TaNAC69(2)                                      <---------At4g35610                  ----------->bZIP911(1)                     <---------AHL20(2)     --------->ANAC58              <---------TGA2(2)       <---------AHL20(2)             --------->At4g35610                ----------->HVH21     --------->ANAC55(2) ----------->GT1    --------->ANAC58             ----------->TGA1 --------->YAB1     --------->AHL20(2)--------->ZAT2                   <---------At4g35610 -REM1(1)    <---------ANAC46  --------->RVE1(1)  ----------->GT1      --------->At4g35610   caaacatatgtaattgtgtatataaaattgaaaatatcacagcagcaagaaaatgaaaatttcttcttaatggagatgacgtggacaaatcactgtcgag  1186400                                                                              <---------ARR11(3)                                                                              --------->ARR11(3)                                    <---------O2                             <---------ICU4                                    --------->O2                            --------->ICU4                                    --------->bZIP60(1)                   --------->YAB1                                    --------->TGA1a                       -------->HAHB4                       <---------At4g35610       <---------HSFB2a(1)      <---------ICU4                       ------------>CBF    ---------->DOF2               --------->ICU4              <---------At4g35610   <---------ANAC58                  --------->AHL20(2)              --------->At4g35610   ==================bZIP_DOF  --------->bZIP60(1)             <---------MYB46(3)     <---------bZIP60(1)         ----------->GT1           <---------At4g35610      <---------TGA1a             --------->TGA2(1)           <-------GAMYB            <---------ANAC58            <---------bZIP60(1)           ===================================MYC_MYB           <---------TGA2(1)           <------NtERF2            <---------bZIP60(2)         --------->ANAC55(2)           --------->At4g35610      --------->ANAC55(2)         <---------ANAC46          <---------DEAR3(2)        <---------ANAC46            <---------ANAC55(2)         <---------DREB2C(2)        <---------ANAC55(2)        ----------->STF1    --------->HSFB2a(2)         <---------RAP2.3(3)       ----------->bZIP910(1)     <---------TGA2(2) ------>ZmHOX2a(2)         <---------RAP2.6(2)       ----------->STF1          ----------->TGA1--------->YAB1         <---------At1g77200      <---------TGA2(2)        <---------ICU4<---------ATHB51  <---------ANAC58         --------->ETT(1)        ----------->TGA1--------->HSFB2a(1) --------->ICU4<---------HSFB2a(2)         <---------DEAR3(1)      ----------->HVH21    ------>ZmHOX2a(1)--------->YAB1      <---------ANAC58        --------->RAP2.6(3)    --------->At4g35610    =================================HOX2a_HOX2a  X ==================MYC_MYB     <---------At4g35610   --------->TOE2(3)<---------AHL20(2)  *TSS <-----   ttggaatgttgtcggctgatgagtcagcaatttagatgacgtggctaaagaacatccttatttatgacgtaattaataatgatctctcgaaatgcgtctt  1186500                                       --------->LBD16                                      <---------HSFB2a(2)                       <---------------AGL15                       --------------->AGL15    --------->MYB52(1)                      ----------------->AGL1    ---------->DOF2                      ----------------->AG   --------->At4g35610                      <-----------------AGL1--------->GLK1(2)                           <----------DOF2                    <-----------GT1   --------->HSFB2a(2)                       --------->ARR11(3)      <---------DEAR3(2)             <---------LBD16<---------ARR11(3)          <---------ARR11(3) XXXXXXXXXXXXXXXXXXX>MIR858        <---------ARR14(2)                         --------->DAG2 -----DOF2        <----------DOF2  --------->GLK1(2)--------->ARR11(3)      ---------->DOF2    <-----   ttcttcgtctgttctatcttctttaccaatttctgcaattctggagaagctaaaggtctcaatctctcagtcaaaaacaaaaggtctctcctttattaaa  1186600                                                               --------->ALFIN1                                                               <---------REM1(1)                                                               ----------->HVH21                                                             <---------At4g35610                                                             <------MYB83                                                            <---------DEAR3(1) ------>NtERF2                                                         --------->MYB55(2)--------->PCF2           <                                                        --------->ALFIN1   --------->ANAC46      ----                                           <---------ARR11(3)<------MYB46(1)  <---------ALFIN1   <---                                           --------->ARR11(3)--------->At4g35610     <----------DOF2-                                    <------ZmHOX2a(1) --------->ZAT2     --------->ANAC58        ----     --------->ZAT6              <------ZmHOX2a(1)    <---------At4g35610--------->ANAC46        <---  --------->WOX13(1)           --------->ALFIN1       <---------ZAT2     --------->ANAC58      <----- ------GT1                    <------ZmHOX2a(1)     <-----------RAV1(2)<---------ALFIN1   <---------At4g35610   ctatctatcactaactagaagaagagattagaggaggaggaagaagatgttgtttcaggtgggaggtgaaggcacacgccccaccttctttgagatggct  1186700                              ------>NtERF2                              --------->At4g35610                              <---------At4g35610                             --------->RAP2.3(2)                                                 <---     <---------At4g35610     --------->DEAR3(1)                                <----------DOF2   <--- ---------At4g35610         --------->RAP2.3(1)                          --------->ANAC46       <---- ----->ZAT2                 --------->ATERF1(1)                          --------->TGA1a        ----- ------At4g35610            <------NtERF2                                --------->O2           ----- -------->At4g35610         --------->DEAR4(2)            <---------ZAT18=================bZIP_DOF ----->At4g35610           ------>NtERF2          <---------ANAC46      ------>MYB46(1)       >>>>>>> ------ZAT2               --------->ANAC46       <------NtERF2          ------>MYB83          >>>>>>> ----RAP2.6(2)------>ZmHOX2a(1)                <---------DEAR3(1)     --------->TOE2(2) -------------   gctgctcagcaacttcctgctagccttcgcgccgctctcacctattccctcggcgtataatgcccttctctacctacgtctcttttcgattttgaaattt  1186800 ---MYB83                                      <---------TOE2(3) ---MYB46(1)                        <---------ANAC46                ------>ZmHOX2a(2)            <--- -----------AtSPL8                  <---------ANAC58                ================================= ---->MYB59                         <---------ANAC58               ================================== ---------->AtSPL8  <---------YAB1  --------->ANAC55(2)  <----------DOF2                       <----- >>SARD1      <---------YAB1        <---------ANAC55(2) <---------ANAC58          --------->ARR11(3) >>CBP60g  <---------YAB1      <----------DOF2 <---------TOE1(3)   <------ZmHOX2a(2)          ------- ---------->TaNAC69(2)       <---------At4g35610        <---------ANAC58          <---------ARR11(3)   ggtacttatctgtatgattcttatatttgtttgctgtttcgtgattttttaggtttttgctttgagacgatcgtttctccataagattttagactatgag  1186900                                                                  <---------GLK1(2)                                                                  <---------ARR14(2)                         <---------YAB1                        <---------HSFB2a(2)               <---                        --------->KAN4(2)                 --------->HSFC1(2)                     ----                     <---------ANAC58                     <---------HSFC1(2)                 --------            <---------At4g35610                           <---------At4g35610                <-------         <---------At4g35610                     --------->MYB46(3)--------->GLK1(2)       <---------      <----------DOF2<---------ANAC58           ------->TEIL   --------->HSFB2a(2)  <---------ANAC58 ---ZmHOX2a(1)     <---------YAB1       --------->At4g35610<---------ANAC58         <---------ANAC46 ===HOX2a_HOX2a  <---------At4g35610    <---------ZAT2  <--------P--------->ARR14(2)<---------ANAC58 ===HOX2a_HOX2a ----------->HVH21       <---------At4g35610<---------ANAC58       <---------ANAC46 ----TOE2(3)<---------ZAT14             --------->ZAT2 <---------MYB52(1)   <---------TOE1(3)<------- -->YAB1<-----------RAV1(1)       <------ZmHOX2a(1) <-----------RAV1(2)     <---------TOE2(3)--------   gatgaattctttgctgctctgatgcttattcttgaaggacacagcttacgaaccacaggtagcttctggattctgttttaggttttgtgtgagagtgtac  1187000  Previous    Next  AGI:  At3g04450.1    Description:  transcription factor. similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G29000.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO44634.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447) Range:  from: 1184303    to: 1186346    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g04460.1    Description:  APM4/ATPEX12/PEX12 (PEROXIN-12); actin binding. Identical to Putative peroxisome assembly protein 12 [Arabidopsis Thaliana] (GB:Q9M841); similar to unnamed protein product [Vitis vinifera] (GB:CAO44650.1); contains InterPro domain Pex, N-terminal; (InterPro:IPR006845); contains InterPro domain Adenylate cyclase-associated CAP, N-terminal; (InterPro:IPR013992); contains InterPro domain Peroxisome assembly, p12 (InterPro:IPR017375) Range:  from: 1186490    to: 1189484    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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