Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              <------NtERF2                                                                            <---------MYB52(1)                                                                           <-----------HVH21                                                                           ------>NtERF2                                                   --------->AHL20(2)---------->DOF2                                                  --------->ICU4  --------->ANAC46                                                  <---------YAB1--------->HSFB2a(2) ------>GT1                                    <---------YAB1   <---------HSFB2a(2) ---WOX13(1) <---------AHL20(2)      <---------ANAC58      <----------DOF2--------->DEAR3(1)       <- >ATHB12     --------->AHL20(2)      <---------ANAC58  <-----------GT1 --------->ANAC46     ------>ZmHOX2a(2)   gctaaaaaactctaaaaaaatagcaatagtagacatgttgctagctcttgttattatttagcttttctacaaaacgccgtcgtttctatttcgatcgttt  1181400                                    <---------ANAC46                                    <---------ANAC58                                 ------->GAMYB                    --------->ARR11(3)                               <---------At4g35610               --------->CCA1(1)                       <---------ATHB12                          --------->RVE1(1)                 --                      ------>MYB46(1)                          --------->AHL20(2)                  <-                      ------>MYB83  <---------ANAC58   <---------ANAC46                          ----              ------>ZmHOX2a(2)--------->At4g35610     ----------->GT1                      --------- <----------DOF2      --------->MYB52(1)              <-------TEIL<---------ARR11(3)       ---------- --------At4g35610 --------->MYB46(3)               <---------GLK1(2)                 ---------->DOF2   cagcttttgacattgatccgaaccaatcggttcaactggcttagtctatccacaggttcgtataaaaaaatctcattttgtcatcaaattaagcagtaaa  1181500            --------->YAB1                                                              <---------MYB46(3)            <---------ICU4                                                              <------MYB46(1)         --------->WOX13(1)                                                           <---------WOX13(1)        --------->AHL20(2)                                                          --------->ATHB12    <---------AHL20(2)                                                              -------->HAHB4    --------->AHL20(2)                                                     --------->LBD16   <---------AHL20(2)                                                     <---------HSFB2a(2)  --------->YAB1                                                          --------->HSFB2a(2)-------- ------->AHL20(2)     --------->ICU4--------->GLK1(2)              ------>MYB83    <---------YAB1 --------AHL20(2)    <---------TOE2(3)                             ------>MYB46(1) <---------ATHB12 ----->AHL20(2)      <---------TOE1(3)                           <---------MYB59   --------->ICU4 >At5g28300<---------ATHB12  <----------ID1           <---------TOE2(3)   --------->ANAC46   <------- ->GT1  <---------AHL20(2) ---------->DOF2           --------->MYB52(1)  <---------LBD16<------MYB83   tttatattaattaatcataagttaatgtttaaagacaaattctatttcaaatttctaacgaatcagacctaattgtccggaataaatgattggttctgaa  1181600                                                                                              =======                                                                                              -------                                                                                              -------                                                                                           <---------LBD16                                                                                       --------->At4g35610                                                                                       <---------HSFB2a(1)                                                           <---------HSFB2a(2)         --------->HSFB2a(1)                                                           --------->HSFB2a(2)         <---------At4g35610                                                         ----------->RAV1(2)           --------->HSFC1(2)                                                        ------>NtERF2                  <---------HSFC1(2)                                                   --------->STY1(2)                   --------->ZAT2                      --------->LBD16 --------->LBD16  --------->ANAC58           <------ZmHOX2a(1) ->HSFB2a(2)        <---------LBD16   ----------->GT1  --------->ANAC58        <-----------RAV1(2)  < --HSFB2a(2)  --------->AHL20(2)    <---------LBD16<---------STY1(2)       <-----------HVH21 --------   aatatcaattgggaaattaaaacccggttcaatttgaaaccggaaacaagactagctacgcctggaaactcacacagagtcacaggagaagctcccgcgt  1181700                                                                                <---------O2 --------     --------->MYB52(1)                                                         =====================   <---------MYB52(2)                                                           <---------bZIP60(2)  --------->ANAC58                                                              <---------TGA1a -----  --------->ANAC58                                                           ----------->HVH21-------  --------->ANAC46                                                           ----------->TGA1-------- ======================bZIP_DOF    <---------ALFIN1                          *TSS       --------->ANAC46 -->O2                           --------->ANAC58                        --------->ARR11(3)---------- -->TGA1a    --------->DAG2      <---------ALFIN1                  >>>>>>>>>TBF1===================== ---------AtLEC2        <----------DOF2                     ---------->DOF2--------->At4g35610<------ ->LBD16    ---------->DOF2      --------->ANAC58           ==============================bZIP_DOF   ctgcaaggaacggataaagtctctctctttctcacacacactctctctctctctctctctctcaaagaagaagaagatgctgacgagtcccagtaacgca  1181800                                                                                                  ---                                                                                                 ----                                                                                               <-----                                                                                              -------                                                                                              <------                                                           --------->HSFB2a(1)                <------NtERF2                                                       --------->LBD16                      <--------                                                      <---------HSFB2a(2)                   ---------                                                      --------->HSFB2a(2)                   <--------                                                      --------->ANAC46                  <---------ZAT2                                                      --------->LBD16                   --------->ZAT2                                                  <---------ARR14(2)                    --------->At4g35610                                                <---------ANAC58                        <---------At4g35610     --------------->AtSPL8                <----------DOF2 <---------HSFB2a(1)         ----------->RAV1(1)     <---------------AtSPL8           --------->ATERF1(1) ---------->TaMYB80        --------->ANAC46 ->ANAC58                            <---------ZAT2  --------->HSFB2a(2)            --------->ANAC58 =MYC_MYB                            <---------At4g35610 --------->ARR14(2)         --------->ANAC58< -->TEIL                             --------->At4g35610 <---------GLK1(2)       <---------SPL7------ >GAMYB                              --------->ZAT2  <---------LBD16          --------->LBD16<------- ->ANAC58                          <------NtERF2<---------ANAC58              ------>NtERF2--------->At4g35610 >DOF2                            --------->LBD16<---------SPL7  <---------TOE1(2) --------->SPL7<--- =bZIP_DOF     <---------ALFIN1  --------->DEAR3(1)  <---------HSFB2a(2)     <---------DEAR3(1)<----- ---ZAT18    <---------ALFIN1   <---------LBD16----------------->AGL1       <---------LBD16<---------At4g35610   cttcatagtagtactccacacttctggccagttcgccggagcaggctttgccgttcccggaatttccctcgttttcactccggcgaacgcagcagcggcg  1181900                                             --------->At5g28300                                            --------->LBD16                                            ----------->GT1                                           --------->ATERF1(2)                                           <---------ATERF1(2)                                          <------NtERF2                                          --------->ATERF1(1)                                          --------->RAP2.3(1)                                         <---------ATERF1(1)                                         <---------RRTF1(1)                                         <---------ERF1                                         ------>NtERF2                                         <---------RAP2.3(1)   <------ZmHOX2a(1)                    <---------ANAC46  ----------->GT1                       <---------RRTF1(2) ----------->GT1                        <---------RAP2.3(3) ------>ALFIN1                          <---------RAP2.3(2)                                    <----- ----->ATERF1(1)                        <---------DEAR3(1)                                     ------ ----ANAC46                             <---------PCF2                                      --------- -->ATERF1(1)                           --------->TCP16(1)                                  <-------- ---LBD16                               --------->TCP20                                  ------->GAMYB -DEAR3(1)                             --------->RAP2.3(1)                              ----------->HVH21 >DEAR3(1)                             --------->ATERF1(1)                              --------->MYB46(3) -RAP2.3(2)                          --------->ALFIN1                                  ------>MYB83 ------ZmHOX2a(1)               --------->LBD16                                        ------>MYB46(1) --->ALFIN1                    --------->HSFB2a(2)                                   --------->TOE2(2) --RAP2.3(1)                   --------->ANAC46               --------->GLK1(1)      --------->TOE1(2) ---NtERF2                     <---------HSFB2a(2)      <-----------HVH21      <---------YAB1 ------- ----DEAR3(1)                 <---------LBD16<---------MYB52(1)        --------->MYB59--------->MYB52(1)   gaggaggaaaattgtgctcgctctctcttctctccggaagtggcgccggtaaattcagtgtcagagctctagttaggcctgatgataccaacgacgctga  1182000      <---------DEAR3(1)     <------NtERF2    ------>NtERF2    <---------RAP2.3(1)   <---------At1g77200   <---------DEAR3(1)  --------->ATERF1(1)  <---------MYB52(1)                                                                         -------- <-----------HVH21                                                                  <---------ANAC58 ----ATERF1(1)                                                        <----------DOF2 <---------MYB46(3) >NtERF2                                                             <---------DAG2 <---------ANAC58 >At4g35610                                               ---------->DOF2          <---------MYB46(3) -At4g35610         <<<<<<<<<WRKY18         ----------->GT1--------->DAG2<---------YAB1      <------- -->WRKY12   <---------GLK1(1)             <-----------------------TaNAC69(2)  --------->ATHB12   ---   ctccgtcggcgatgggtttctgtcaaaattccactcggaaatagagaggtaatctcttcaaaaagctatacccttttgatttcattggttgtttcatctg  1182100                                              <----------DOF2         <---------ARR11(3)            --------->ZAT18         --------->ARR11(3)          --------->ZAT2                                            <----- --->RAV1(2) <---------MYB52(1)   ---------->DOF2                                             <------ --At4g35610<----------DOF2    --------->ANAC58                                          <-----------GT1 ------>WRKY18(1)              --------->ANAC58        ------->TEIL               ---------->DOF2   <   gtcaagtttgagacctttagctctatagtagagaagcaaagctcgctgctttagatgtatgtgttgaacattgtttagtgtcttcaaagtttttcatctt  1182200                                                                             <-----------RAV1(2)                                                                          ----------->HVH21                                                                    ----------->HVH21                                                                   <---------RAP2.6(3)                                                                   <-----------HVH21                                                                --------->ZAT14                                                                --------->At4g35610                                                                <---------ZAT14                                                            --------->ARR14(2)                     --                                                            <---------ARR14(2)    ----------->GT1  <-                      <---------ARR11(3)              --------->ANAC58   --------->At5g28300     <---    <----------DOF2   --------->ARR11(3)              --------->ANAC58   <-----------HVH21       ---- -----DOF2          ----------->ARR10                 --------->ANAC46<---------At5g28300        ---- ---ICU4   --------->ETT(2)                      <----------ARF1<---------At4g35610    --------->GLK1(2) ----------DOF2   --------->REM1(2)     ------>ZmHOX2a(2)   <---------ARR11(3) --------->At4g35610---   ttctttctttttgtctactgtgtagattttagttgagactgatctcatggggagacaagcaagttctgcagtcacggtgacagatggagaaactgtaagt  1182300  Previous    Next  AGI:  At3g04445.1    Description:  pseudogene, putative polyribonucleotide phophorylase, similar to polyribonucleotide phophorylase GB:AAC49669 from (Spinacia oleracea); blastp match of 58% identity and 7.3e-14 P-value to PIR|S64680|S64680 exoribonuclease 100 RNP - spinach Range:  from: 1181777    to: 1182817    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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