Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              --------->HSFB2a(2)  ---------->DOF2        <---------ARR11(3)                                    --------->ATHB12 -->AHL20(2)  --------->TOE1(3)                                               <---------YAB1    ----- ---AHL20(2)  --------->YAB1<---------HSFB2a(2)                 <---------At4g35610            ------ ---AHL20(1)  --------->TOE2(3)---------->DOF2                  --------->At4g35610 --------->TOE2(3)   tttgtaaagtcttaaaccataactcaagttctataaagcacaacaattcaaattcgatttagtttaagctccagcattgtatgatttcttaaaaacataa  1127100                                                                               ------>MYB83                                                                               ------>MYB46(1)                                                                 <-----------HVH21                                                                <---------ANAC58       ---------->DOF2                                                          ---------->DOF2    --------->AtMYB61                                                 --------->MYB52(2)          <---------MYB59                                           <---------ANAC46     <---------ANAC58    --------->AtLEC2         --------->AHL20(2)               <------NtERF2  <---------MYB52(1)  ------->GAMYB         <---------AHL20(2)              ------>NtERF2<------NtERF2         --------->MYB46(3)       <----------DOF2              <---------At5g28300 <-------GAMYB<---------At4g35610   --------->ANAC46               --------->ARR14(2) ------>NtERF2   --------->At4g35610           <- ---->DAG2                        <---------ARR14(2)<---------DEAR3(1)   --------->MYB46(3)  <------- ---->DOF2                       <----------TaMYB80 --------->DEAR3(1)   --------->REM1(1)   <-------   agtctacgtctttaatttaagctatagagagaagcatataccgcgccttgttcgtcgccgttaagcgcgtgagctacaaccaaaccatggaaagaacgag  1127200                         <-----------HVH21                        --------->bZIP60(1)                        <---------bZIP60(1)                      --------->YAB1                      <---------ICU4                     <---------ATHB12                     --------->ICU4                   --------->WOX13(1)                 --------->At4g35610                --------->RAP2.6(2)              --------->ZAT2              --------->At4g35610              --------->At4g35610                                  <              <---------At4g35610              ----------->RAV1(2)          --------->HSFB2a(2)    <- ------TEIL   <---------ZAT2                 <---------ALFIN1       --------->STY1(2)        -------- --TOE1(1)   ----------->RAV1(1)     --------->TOE1(3)              <---------STY1(2)       --------- --TOE2(1)  <-----------RAV1(2)      --------->TOE2(3) --------->ARR11(3)   <---------HSFB2a(2) -----   gtccagggctaagcccagcagcaatcatgtcatagataacctcagaaacacctgaagtatctcgatttctagctcgttccataagctcgtccataaaagt  1127300                                                                              <------NtERF2                                                                              ------>NtERF2                                                                              --------->LBD16                                                                             --------->DEAR3(1)                                                                            <------NtERF2                                                                            --------->ATERF1(1)     <---------ATERF1(1)                                                   <---------RAP2.3(1)    --------->ARR14(2)                                                     ------>NtERF2    <---------ARR14(2)                                                     <---------ATERF1(1)   <------NtERF2                                                          --------->DEAR3(1)   --------->ATERF1(1)                                                    <---------DEAR3(1)  --------->LBD16                          ---------->DOF2              <---------ATERF1(1)         - <---------DEAR3(1)                       --------->LBD16               <-----------HVH21         --- <---------ANAC46                        --------->HSFB2a(2)           --------->DEAR3(1)      ------ ---------LBD16                    <---------ALFIN1                <---------ZAT2             <------ --------ANAC46                 --------->REM1(1)                  --------->At4g35610--------->At4g35610 ->DAG2                     <---------At4g35610          <-----------TGA1--------->ATERF1(1)------>ZmHOX2a(1) ->DOF2    ------>ZmHOX2a(1)--------->At4g35610  ---------->DOF2   --------->ZAT2 <----------DOF2<--- ---->ALFIN1           ----------->HVH21 <---------HSFB2a(2)       <---------At4g35610<---------At4g35610   gaggcggagactcctctccagagcggagacagcttcaccacttccgaaagacaaagagtcgtcattctcagctccgtcgccgcgcttctgcttcctcctc  1127400                                                         --------->ANAC58                                                         ----------->HVH21                                                         --------->ANAC58                                                      --------->ATERF1(1)                                                      <---------SPL7                                                      <------NtERF2                                                     ------>NtERF2                                                     <---------ATERF1(1)                                                     <---------RAP2.3(1)                                                     <---------DEAR3(2)                                                     <---------DEAR4(2)                                                    <---------RAP2.3(2)                                                    <---------RAP2.3(3)                                                    <---------DEAR3(1)                                                    <---------ATERF1(2)                                                    --------->ATERF1(2)                                                   --------->ATERF1(1)                                                  ------>NtERF2                                                  <---------RAP2.3(1)                                                  <---------ATERF1(1)                                                  --------->LBD16                                                 <---------LBD16                                                 <---------RAP2.3(2)                                                 <---------RAP2.6(2)                                                <---------LBD16                                              --------->GLK1(2)                                             --------->KAN4(2)                                            --------->GLK1(1)                                            --------->HSFB2a(1)                                            <---------HSFB2a(1)                                            <----------TaMYB80                                            <---------GLK1(1)                                            --------->KAN4(1)              >>>>>>>>>GATA-4                                            <---------KAN4(1)              >>>>>>>>>GATA-1     <---------MYB52(1)                    ---------->TaMYB80              >>>>>>>>>GATA-2  <---------TOE1(2)                        <---------ARR14(2)              >>>>>>>>>GATA-3 ------>ZmHOX2a(1)--------->ZAT14          <---------KAN4(2)          <---------ANAC58 -------------------->WRI1                 --------->ARR14(2)         <---------ANAC46 --->ZmHOX2a(1)   <---------ZAT14          <---------ARR11(3)        <---------MYB46(3) >ZmHOX2a(1)     --------->ALFIN1          --------->ARR11(3)    <---------ARR14(2) ---ALFIN1     --------->LBD16            <------ZmHOX2a(1)     <------ZmHOX2a(1)                <--- ------ALFIN1<---------LBD16            <---------ANAC46--------->SPL7<---------ANAC58    --------->MYB52(1)   ctcctcggtttcttctccggtgcagaaattgagcatcgaatggaggatattccggcggcacgacgaggaattgggtggattgaattggagggaaacggag  1127500                                                                                                   --                                                                                                   <-                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                              -------                                                                                              <------                                                                                             --------                                                                                          <---------AHL20(2)                                                                                     --------->ARR11(3)             ----------->HVH21             <----------DOF2          ----------->GT1  <---------ARR11(3)    <------ZmHOX2a(1)          ---------->DOF2         <---------LBD16 --------->ATHB12  <---------YAB1  <---------TOE2(3)          ----------------->AGL1<-----------GT1 --------->DAG2    <---------GLK1(2) ---ZmHOX2a(1)      <---------AHL20(2)     <---------DAG2         ---------->DOF2  <---------TOE2(3)   gattgaggaacaagagtgacattttttttttgccaaagtctgaaactttttttttactggggaatggataaagtgatttgaaatttagatttttatttaa  1127600                              <-------MYC3                              ------->MYC3                             --------->ANAC55(2)                             <---------TGA1a                             <---------ANAC55(2)                             --------->O2                             <---------ANAC46                             --------->TGA1a                         --------->ARR11(3)                              <------------CBF ------->AHL20(2)       --------->At4g35610                             ------>MYB46(1) --------AHL20(2)       <---------At4g35610                             ------>MYB83 ------>YAB1  <---------ARR11(3)                                      <---------MYB59 ------>AHL20(2)   <-------MYC3       <------------CBF        ------>MYB46(1) -------AHL20(2)   ------->MYC3     <---------AHL20(2)   <---------ARR14(2)                --------->AHL20(2) -->AHL20(2)  --------->ARR11(3) ----------->GT1         --------->ARR14(2)             --------->ARR11(3) ---AHL20(2) --------->YAB1  <---------O2      <-----------GT1------>MYB83              <---------ARR11(3) ->AHL20(2) <---------YAB1<------ZmHOX2a(2)<------------CBF <---------MYB59   <------------CBF   ttaaaatgtagacgatgatcatgtgcagatcacgtgagttaattggattgaaccagacagaaccgaactagaccaaattgcattgaacaagatttatatc  1127700                                                                                   --------->HSFB2a(1)                                                                                 <---------ARR11(3)                                                                                 --------->ARR11(3)                                                                       --------->ATHB12                       --------->ANAC58                                <--------ATHB1                       ----------->GT1                                 --------->YAB1                       --------->ANAC58                               <---------ATHB12             ------>MYB46(1)                                          --------->ICU4<----------DOF2             ------>MYB83        ----------->GT1                   <---------WRKY12------>ZmHOX2a(2)           ------->GAMYB     --------->ARR11(3)                    <---------WRKY38(1)           <---------MYB59   <---------AHL20(2)                   ------------>CBF<------ZmHOX2a(2)        --------->MYB52(1)   --------->AHL20(1)        <---------ARR14(2) <---------MYB46(3)     --------->ANAC55(2)     <---------AHL20(1)        --------->ARR14(2)<---------WOX13(1)     <---------ANAC55(2)    --------->ICU4         <---------LBD16--------->WRKY18(1)   agtagtcacataaccgaactaaaccaagtaatattttgttaatcggtagattatgcggttttgagatggtcaatgatggatgcgatctttccaaaggtta  1127800                                                               --------->TGA2(2)                                                              <-----------TGA1                                                              <-----------HVH21                                                             --------->ANAC58                                                             --------->ANAC55(2)                                                             <---------ANAC46                                                             <---------ANAC55(2)                                                             --------->O2                                                             --------->TGA2(1)                                                             --------->bZIP60(2)                                                             <---------TGA2(1)     <-----------HVH21                                                             <---------bZIP60(1)   <-----------TGA1                                                             <---------TGA1a      --------->ANAC55(2)                                                             --------->bZIP60(1)  <<<<<<<<<<HY5   <--                                                             <---------bZIP60(2)  --------->bZIP60(1)                                                             --------->TGA1a      --------->ANAC46<--                                                             >>>>>>>>>>HY5        <---------TGA1a ---                                                             <---------O2         --------->TGA2(1)                                                             --------->ANAC58     --------->bZIP60(2)                                                            ----------->STF1      <---------bZIP60(1)                          --------->At4g35610               <-----------STF1      <---------TGA2(1)                    <---------At4g35610                   ----------->TGA1        --------->TGA1a ---                    --------->At4g35610                   ----------->HVH21       <---------O2    ---                  <---------WRKY12                       <-----------HVH21        --------->O2    <--                  <---------WRKY45                      --------->O2             <-----------STF1 <--                <-----------HVH21                       <---------TGA1a          ----------->STF1 ---               <---------MYB46(3)                       --------->ANAC55(2) --------->ATHB12      ---              --------->ALFIN1      ------->TEIL        --------->TGA1a    <---------YAB1  --------->YAB1         --------->ANAC58 <---------ZAT2                <---------O2       <------ZmHOX2a(2)      ---         --------->ANAC58 --------->ZAT2             ------>ZmHOX2a(1)    <---------ARR11(3)   ------    ----------->HVH21     <---------At4g35610     ---------->ID1      <---------ALFIN1    <-------TEIL  <----------DOF2 <---------WRKY38(1) --------->ZAT18=============================HOX2a_HOX2a <------   agggctttgacaagcagtggtcaactccagcttccatgaatgccctagtctcgtcctcatgtgacgtcatccccacgatcattgacgtcacattcatgtc  1127900                                                                             --------->ANAC58                                                                             <----------ID1                                                                             --------->ANAC58  --------->HSFC1(2)                                                         --------->ANAC46  <---------HSFC1(2)                                                        --------->SPL7 ------->TEIL                                                             <---------SPL7 -------ANAC55(2)                             --------->ANAC46            --------->ZAT14 -------O2                                    --------->ANAC58           --------->ALFIN1 ------>O2                                    --------->ANAC58          <---------------AtSPL3      - ------>TGA1a                              ------>ZmHOX2a(1)           <---------ANAC58            -- ------>ANAC46                          --------->HSFB2a(1)            <---------ANAC58          <--- -------bZIP60(2)                      --------->ARR14(2)              <---------ANAC46         <---- -------TGA1a               --------------->AGL15                   --------->ALFIN1            <---- ------>ANAC55(2)          <-----------------AGL1                  ------->MYC3                 <---- ------>ANAC58           <-----------GT1<---------HSFB2a(1)        <-------MYC3                ------ ------>ANAC58         <-----------GT1 <---------ARR14(2) --------->ATHB12--------->ZAT18     <------ ----->HVH21        <---------MYB52(1)<---------GLK1(1)   <---------ICU4<---------------AtSPL8------- -----HVH21    --------->ANAC46       --------->GLK1(1) <---------WOX13(1)<---------ZAT14<------ZmHOX2a(2)   acgtagcttcttatttctcgccgtttttcaccatgtaagggaatcctccagccatttgaatgattcccatgtggagtgtacgacaagatggatcatcgtc  1128000  Previous    Next  AGI:  At3g04260.1    Description:  PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3); DNA binding. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G31400.1); similar to putative chloroplast RNA processing protein [Oryza sativa (japonica cultivar-group)] (GB:AAM93724.1); similar to hypothetical protein OsI_032777 [Oryza sativa (indica cultivar-group)] (GB:EAY78818.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38774.1); contains InterPro domain DNA-binding SAP; (InterPro:IPR003034) Range:  from: 1123030    to: 1127522    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g04270.1    Description:  two-component response regulator. contains InterPro domain Response regulator receiver; (InterPro:IPR001789) Range:  from: 1127911    to: 1128087    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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