Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                ----------->GT1                                                                             --------->DAG2                                                                            ---------->DOF2                                                                         <---------ANAC46                                                                    <---------O2                                                                    --------->ZAT2                                                                    --------->At4g35610                                                                    <---------At4g35610                                                                  <-----------RAV1(2)  <------ZmHOX2a(1)                   <---------WRKY38(1)     --------->At4g35610 ------->DOF2                  --------->ARR14(2)            --------->ARR11(3)             --------- ------>MYB52(1)       --------->WRKY18(1)                   <---------ARR11(3)  --------->ATHB12 --MYB111(1)  <---------YAB1   <---------ARR14(2)      ---------->DOF2  <------NtERF2     --------->YAB1   taaaggattcaagaagatgaatgaggtcaagagtatttgggcaacgaagtgaatgaagaaagagagcttcaggtggcataaagtgatttgaatcaaaagg  1094000                             --------->LBD16                   <---------ANAC58    <----------DOF2                            <---------HSFB2a(2)          <---------GLK1(2)   <---------TOE2(3)                         ------>ZmHOX2a(1)               --------->ARR11(3)  <---------TOE1(2)         ---------->DOF2 =============================HOX2a_HOX2a       <-----------ARR10  ------->GAMYB       ---------->ID1                     <---------ARR11(3)  <---------TOE1(3) <---------MYB52(2) <---------ANAC58             ---------->DOF2        --------->GLK1(2) --------->MYB46(3) <---------ANAC58         <---------ARR11(3)<---------ANAC58  <-------TEIL ->DOF2 --------->MYB52(1)  --------->HSFB2a(2)------>ZmHOX2a(2)       <---------GLK1(2)  --------->GLK1(2)   gcaacgaacaaaacagccattttcgtccttctggagaagagaagagtgatctaaagctagattttgcgagagagaatctaaggttctttgacattctgac  1094100                                                     --------->ANAC46                                                     <---------ANAC55(2)                                                     --------->ANAC55(1)                                                     --------->ANAC58                                                     --------->ANAC55(2)                                                     --------->ANAC58                                                 <------NtERF2                                                 --------->ATERF1(1)                                                --------->LBD16                                                <---------ATERF1(1)                                               <---------ANAC46                                               <---------DEAR3(1)                                              <---------At4g35610                                              <---------ABI4(1)                                              --------->ATERF1(1)                                              <------NtERF2                                              --------->At4g35610                                              <---------LBD16                                             <---------ATERF1(1)                                             <---------ORA47(2)                                             <---------RAP2.6(1)                                             <---------RAP2.3(1)                                             <---------ERF1                                             <---------RRTF1(1)                                            --------->ATERF1(2)                                            <---------ATERF1(2)                                            <---------RRTF1(3)                                            <---------RAP2.6(2)                                            <---------DEAR3(1)                                            --------->DEAR3(1)                                            <---------RRTF1(2)                               --------->At4g35610<---------ARR14(2)                               <---------At4g35610--------->ARR14(2)                               <---------ZAT2<---------DEAR4(2)                               --------->ZAT2------>NtERF2                          --------->LBD16   <---------RAP2.3(2)                         <---------ANAC46   <---------RAP2.3(3)                       --------->MYB52(1)  <---------LBD16                       ------->TEIL        <---------ABI4(1)                             <---------AtMYB61                     <---------ZAT14       --------->ATERF1(1)                           --------->ALFIN1                     --------->ZAT18     <---------DEAR3(1)                  --------->ARR11(3)   <--                     --------->ZAT14   --------->GLK1(2)                    <------ZmHOX2a(1)    <---                    --------->ALFIN1   --------->ARR14(2)            --------->ICU4     <------ZmHOX2a(1)         ---------->DOF2<---------LBD16<---------ARR14(2)      <XXXXXXXXXXXXXXXXXXXXXMIR856 ---------   aacagggattttaaagaagagagtgtaccggagagctcgcgaatcggcggcggagacggaacgatggagtaattgttaggattttgaagaggaggtggag  1094200                                                                                         <---------MYB46(3)                                                                                        <---------AtMYB61                                                                                        --------->ALFIN1                                                      <-------TEIL                   <---------DEAR3(1)                                         <---------ZAT6             <---------YAB1 ------->GAMYB                  <------ZmHOX2a(1)  --------->ARR14(2)       <---------TOE2(3)   ----------->HVH21 -------AtMYB61  <---------YAB1      <---------ARR14(2)       <---------TOE1(3)   --------->MYB46(3) ---ZmHOX2a(1)--------->ICU4        <------ZmHOX2a(1)<---------ARR14(2)   <-----------RAV1(1)  <----- >ALFIN1>>>>>>>>>TBF1            <------ZmHOX2a(1)<---------------AtSPL8  --------->ALFIN1    <------   gaggtcggaagaagaaattaggattagaatttggaggaggatagtggtagaagaggttcggattagggttttgatagtgtggcaacgacggtggtcgatc  1094300                   <---------RAP2.3(1)                  <---------RAP2.6(2)                  --------->ATERF1(2)                  <---------ANAC46                  <---------DEAR3(1)                  <---------RAP2.3(3)                 --------->ATERF1(1)                <---------ATERF1(1)               ----------->HVH21               ----------->TGA1           <------NtERF2           --------->ATERF1(1)          <---------ATERF1(1)          ------>NtERF2         <---------DEAR3(1)         --------->DEAR3(1)         ----------->HVH21        --------->ATERF1(1)       --------->LBD16                                                                         <-----       ------>NtERF2    <---------ZAT2                         --------->ANAC58               <------      <---------ANAC46  --------->At4g35610          *TSS      --------->ANAC58        <------------CBF     <---------LBD16<------NtERF2                <---------ANAC46                     --------->ATHB12  <---------GLK1(1)------>NtERF2                 <---------ANAC58                    <---------AHL20(2) -ZmHOX2a(2)  <-----------HVH21                  <---------ANAC58             <-----------GT1-------- ---ARR14(2)<---------DEAR3(1)               <XXXXXXXXXXXXXXXXXXXXMIR403     --------->ZAT14 <-------   catgagttccggcgacggtgacggcgagcttcacagaaacgttgtgagtttgtgtgtgattcgaaacgaaacgtttctgtttactacttaattggatata  1094400                                                            <-------TEIL                                                        <---------AHL20(1)                                                        <---------ARR11(3)      --------->AHL20(2)                                --------->ARR11(3)      <---------AHL20(2)                                --------->AHL20(1)     --------->AHL20(2)                              --------->AHL20(2)                        <----- ------GT1                                        --------->TOE2(3)                            ------ ---ARR14(2)                               --------->AHL20(2)                      --------->AHL20(2) ->CCA1(2)                        ------>NtERF2<<<<<<<<<<GT-3b               ----------->GT1   ------ --GLK1(1) --------->MYB59<----------DOF2  <---------AHL20(2)      --------->SPL7  --------->YAB1  --   ctgcccatttaattaggcccattagtgtctttattcggcccatatttatttttcttaaaatattcatcgtaagtcgatagagtaataaaaaacgttgtga  1094500      --------->ANAC58                                                            --------->YAB1  ---      --------->ANAC58                                                            <---------AHL20(2) ----------->HVH21                                                             ------->TEIL<---------ALFIN1 ----ZAT14                                  <---------YAB1           <------ZmHOX2a(2)--------->ANAC58 --->ZAT18           <---------AHL20(2) <---------GLK1(2)            ================================ --->ZAT14       ----------->GT1      <---------YAB1                <---------ARR11(3)--------->ANAC46 --------->GT1  <---------ARR11(3)    --------->ICU4               <------ZmHOX2a(1)  --------->ANAC58   actgtgacaagaaaacgagatgtttaatctttcacatttcatgattctgattcaaactcttcttaaacaggatcacaaacgtatttataagccccaagtc  1094600                            <---------ANAC46                                <---------ANAC58                        --------->CCA1(2)                                   <---------ANAC58             --------->AHL20(2)                                          <----------DOF2             <---------AHL20(2)     <---------AHL20(2)   --------->AHL20(2) <---------ANAC46      ------>ZmHOX2a(1)--------->ARR14(2)       ----------->GT1       <---------ALFIN1     <---------ALFIN1 --->ZmHOX2a(1)        <---------ARR14(2)    ------------>MYB.PH3(1)--------->ANAC46  <-----------GT1 ====HOX2a_HOX2a       <---------ARR11(3)--------->TOE2(3) --------->ANAC55(2) <---------TOE1(2)<----   ctgttctcctaaattttaaatacaagatttgtgtatatttattcattaaactgttacatttacatattacacacactttcgtagttatttcccacacatt  1094700                                                                                   <---------ARR11(3)                                                                              <---------TOE1(3)                                                                              <---------TOE2(3)                                                                             <---------DOF5.7(2)                                                                             --------->MYB52(1)                                                                           --------->DOF5.7(2)                                  <---------AHL20(2)                      --------->TOE2(3)                          <---------YAB1                                 --------->YAB1                      <----------DOF2                                    <---------ICU4                     --------------->AGL15                               --------->ATHB12                 <-----------GT1 <---------AHL20(1)   ------->GAMYB      <--------HAHB4               <---------ANAC58  <---------ARR11(3)  --------->MYB46(3) <---------YAB1               <---------ANAC58  --------->ARR11(3)<-----------GT1      <---------ATHB12   <---------AHL20(2)<---------------AGL15 <-----------RAV1(1)          --------->ICU4 ---TEIL      --------------->AtSPL8  <---------AHL20(2)           --------->TOE2(3)          <------ZmHOX2a(1)   catttttaatctgtatttcttaccctttattagtatatattttatctgttgtataaccatcaacttatttcttaatcattaacgatatcatcttgaggag  1094800               --------->ARR11(3)               <---------ARR11(3)              <---------CCA1(1)              --------->GLK1(1)              --------->CCA1(1)                                                ----------->HVH21              <---------RVE1(1)                                            --------->HSFB2a(1)              --------->RVE1(1)                                            <---------HSFB2a(1)     --              <---------GLK1(1)                                    --------->WOX13(1)              <-             <---------ARR11(3)               <----------DOF2     <---------WRKY38(1)--------->LBD16             --------->ARR11(3)       ------->GAMYB               <---------WRKY12  --------->ANAC58       --------->HSFB2a(2)           --------->ANAC58            --------->WRKY18(1)--------->ANAC58-       <---------HSFB2a(2)           --------->ANAC46   <---------ARR11(3) --------->ATERF1(1)     <-    <----------DOF2      --------->YAB1  ---------->DOF2--------->ARR11(3) <---------HSFC1(2)      <-    <---------DAG2 <-----------GT1   --------->ANAC58   --------->GLK1(2)  --------->HSFC1(2)      <-   aaaacacttttcgaagatatcttactatattgatgtccaacgcaaaagctttagccaaaatctttgggtcaatcggaggcttcgacccgaaaactgcatc  1094900  Previous    Next  AGI:  At3g04160.1    Description:  similar to hypothetical protein [Vitis vinifera] (GB:CAN82741.1) Range:  from: 1091154    to: 1094353    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g04170.1    Description:  germin-like protein, putative. Identical to Germin-like protein subfamily 1 member 3 precursor [Arabidopsis Thaliana] (GB:Q9M8X3;GB:Q6GKX0); similar to germin-like protein, putative [Arabidopsis thaliana] (TAIR:AT3G04150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62261.1); contains InterPro domain RmlC-like jelly roll fold (InterPro:IPR014710); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Germin; (InterPro:IPR001929); contains InterPro domain Cupin, RmlC-type (InterPro:IPR011051) Range:  from: 1094628    to: 1095672    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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