Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      <---------YAB1                                                 --------->GLK1(2)                 <---------AtLEC2                                        <---------YAB1                       <---------YAB1                                     <---------AHL20(2)                     <---------TOE2(3)      <- -GLK1(2)   ---------->DOF2<---------ARR14(2)   <---------GLK1(2)     --------->ETT(2)  ---------->DOF2   tctagttttcgaataaaagtttctaagtggaacctatattttatgtttgcgattctcatttatgcgagtttgtagactgatgtttgaatgaaaagtattt  1083600                                                                                                   <-                                                                                                 <---                 <---------GLK1(2)           --------->MYB52(1)                              <-------           <---------YAB1                 --------->TOE2(3)    ---------->DOF2               <-------      <----------DOF2                   <-------TEIL    ----------->GT1               <---------At4g35610     <---------DAG2            --------->TOE1(2)        <---------ANAC46------->GAMYB --------->At4g35610 ----------RAV1(1)             --------->TOE2(2)     --------->ALFIN1--------->MYB52(1)    ----------   catgttgccttttgttattgattcttctcaaaacataagaaattcattaacagatgtgcggtttataaagacaacgaaatatgtgttcatctgtaaaggt  1083700                                                                 --------->ARR14(2)                                                                 <---------ARR14(2)                                                             <---------ZAT18                                                         <---------------AtSPL8                                                         --------------->AtSPL8                                                      <---------AHL20(2)            <---------YAB1                            <--------HAHB4                                -          <---------ICU4                              <---------ICU4                                -         --------->ICU4                               --------->AHL20(2)                          <--         <---------ATHB51                             --------->ATHB51                          ----- ---------DOF2                                       <---------ATHB12                      <-------GAMYB ----TEIL--------->AHL20(2)                          <---------ATHB51--------->LBD16   <------MYB46(1) --------AtSPL8<-----------GT1     <---------ANAC55(2)--------->ATHB12   ----------->GT1  <---------MYB46(3) --TOE2(3)-------->ATHB1           --------->ANAC55(2)-------->ATHB1--------->ANAC46   <------MYB83 - >DOF2   <---------AHL20(2)        <---------ANAC46  --------->ICU4<---------LBD16    <---------AtMYB61   actttgaacaaattattaaaccatgttacacaaattcacgtatagtggcacttcaattatttgtacacatccgcatcgaaaaaatggggaggtcgttgat  1083800                                   --------->WRKY18(1)  --------->ARR14(2)                                 <------MYB83          <---------MYB52(1)                                 <------MYB46(1)   -------->P                               <--------P         --------->MYB52(1) -------->ANAC58               <---------MYB52(1) --------->ARR14(2)                 ---------------- -------->ANAC46              --------->ZAT2      <---------ARR14(2)     ----------->GT1          --- ---------GT1                 <---------ZAT2     ----------->HVH21     ----------->GT1--------->HSFB2a(2) ---->CCA1(2)               <-----------RAV1(2) <---------MYB59       <---------DEAR3(1)       ------ -------->ANAC58      ---------->DOF2      ---------->DOF2          --------->MYB52(1)<---------HSFB2a(2)   atacgacacaagaaggcccaatgccaaagcccagttggtcaaacacaaagcctaaccggtttttcaaaccagacggtgtaaaacgcttccaaaaccagag  1083900                                                                  <------NtERF2                                                      ------>NtERF2 <-----------TGA1                                                      --------->LBD16            *TSS     <----------DOF2                                 <---------ETT(1)        ------------>CBF  <---------ALFIN1                                   --------->ANAC46       <-----------GT1        <- ->AGL1     --------->RAP2.6(2)                     <---------LBD16<---------ETT(2)               <-- ------>ZAT18--------->At5g28300          ------>ZmHOX2a(1)      <---------RAP2.6(3)   <----------DOF2 ---->DOF2  <---------ANAC46           ------>ZmHOX2a(1)         <---------ATERF1(1)   <---------MYB52(1)   agcccaactttgggccgtaaacccttctcttgcgattagtcctcctcaaatttctccggcaagaggccgtcgtcattttcacaatttccctttgctccat  1084000                                                                              --------->YAB1            <----------DOF2                                                  <---------YAB1           ------>ZmHOX2a(2)                                               --------->YAB1          <------ZmHOX2a(2)                                               <---------YAB1         <---------ARR11(3)                                               --------->ICU4         --------->ARR11(3)                                              <---------TOE2(3)      <-------TEIL                                                    <---------WOX13(1)      --------->SPL7                                                --------->ATHB12  <---------------AtSPL3                                           <---------YAB1  <---------------AtSPL8                      <-----------HVH21    <---------AHL20(2)               < ----------HVH21                       <-----------HVH21    <-------TEIL--------->YAB1             <- --------DOF2       <-------TEIL    <-----------GT1        --------->CCA1(2) ----------->GT1     ----   ctttcaggtacgatctttgagtttcatgtctaacttattttcgtcatatgtcactagtaagattcaaatttcattgatgatgataaaaatttgattttcc  1084100                                                <---------ANAC46                                                <---------ANAC58                    --------->TOE2(3)       --------->At4g35610                      <---------ANAC58                 --------->ANAC58       <---------At4g35610                 <---------ANAC58                      --------->ANAC58       <-------GAMYB                       <---------ANAC58                      --------->ANAC55(2) ---------MYB46(3)                   <---------AHL20(2)                        <-----------GT1 --------YAB1                       --------->AHL20(2)--------->YAB1         <-----------HVH21 -->ZmHOX2a(1)         <---------LBD16   --------->ARR11(3)            <---------ALFIN1     ------>ZmHOX2a(1)   tatggttgcagttgaagaaccctgttctgggttttagatttaatgtcttggcttattcaaaatcgcattggaaacaccttgttacgccttaatccttctt  1084200                                                                                               <-----                                                                            ------->TEIL       ------                                                                         <---------YAB1        <-----                                                                    <---------ANAC55(2)        ------                                                            --------->TOE1(2)                --------                                                            --------->TOE2(2)     <---------At5g28300                                 --------->GLK1(2)         <---------ANAC55(2)   <-----------GT1-----                      --------->TOE2(3)        <---------LBD16      --------->ANAC55(2)     <------ZmHOX2a(1)              <-----------GT1   <---------GLK1(2)          ----------->RAV1(2)--------->KAN4(2)------   cgtcttctatcgctattttctctacgtttatcaagaatctctctactgcttcggagcaattacctgagacacttgatgaatattcacagtctgaggagat  1084300        <---------YAB1     <---------YAB1 ----ARR14(2) --->ARR14(2) ----ARR11(3) --->ARR11(3)          --------->At5g28300                                                          < --->ARR10           <---------DEAR3(1)                      --------->STY1(2)          --------->WOX13(1) ---->CCA1(2)<------MYB46(1)           --------->ICU4      <---------CCA1(2)    ---------->DOF2 <---- --->ARR11(1)<------MYB83     <---------ZAT6        <-----------GT1     <---------GLK1(1) <---------ATHB12   atggaatgttattgtaggtagagacggtgatagagatagtgaagatgatgtttttaaacgtctatctagcgatgaaatctgtaaaagagtcaatctttct  1084400                                              ------>ZmHOX2a(2)                                             --------->CCA1(2)                                             <------ZmHOX2a(2)                                            <---------ARR11(3)                                            <-----------ARR10                                            --------->ARR14(3)                                            --------->AGP1                                            --------->ARR14(2)              --------->At4g35610           <---------ARR14(2)        <-------TEIL                        <---------ARR14(3)     <------MYB46(1)                        --------->ARR11(3)     <------MYB83--------->At4g35610       --------->GLK1(1)    --------->MYB59     <---------TOE1(2)  <---------GLK1(1)                     ---------->DOF2    <---------AtMYB61   <---------TOE2(2) ----------->ARR10                 <---------ANAC46 ---------MYB46(3) <----------DOF2 ----------->HVH21  <------MYB83    <----------CDC5 -----YAB1    <---------At4g35610<---------At4g35610  <------MYB46(1)--------->At4g35610      -------   gatggtttggttcataagctgcttcataggtttagagatgactggagatctgcgcttggtattttgaaatgggctgagtcttgtaaagggcataaacatt  1084500  Previous    Next  AGI:  At3g04120.1    Description:  GAPC (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase. Identical to Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (GAPC) [Arabidopsis Thaliana] (GB:P25858;GB:Q42352;GB:Q9M8W8); similar to GAPC-2, glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G13440.1); similar to Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (GB:P04796); contains InterPro domain Glyceraldehyde-3-phosphate dehydrogenase, type I; (InterPro:IPR006424); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain Glyceraldehyde 3-phosphate dehydrogenase; (InterPro:IPR0 Range:  from: 1080957    to: 1083537    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g04130.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G22670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46677.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 1083981    to: 1086392    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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