Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <----------ID1            -------->HAHB4          --------->ZAT14            --------->ATHB12        <---------ZAT14           --------->ICU4           --------->ZAT18       <---------AHL20(1)      ---------->DOF2       --------->YAB1       --------->AHL20(2)   --------->CCA1(2)  --------->GLK1(2)       <---------AHL20(2)  <---------ARR11(3)--------->HSFB2a(1)           --------->MYB46(3)      --       --------->AHL20(1)  --------->ARR11(3)<---------HSFB2a(1) ---------->DOF2       --------->ANAC58    --------->YAB1     ---------->DOF2  <---------HSFB2a(2)   --------->TOE2(3)        --------->ANAC58   tttctctaataaaatgatggagacaaaaagatataaagtatactagaaaattctagcatcacatcgtaaaagtatcaacaactaaaatgaagcaactatg  1035100                                                                       <---------AHL20(2)                                                                      <---------AHL20(1)                                                                      --------->AHL20(2)                                                                      <---------AHL20(2)                                                                     <---------------AGL15                                                                    <-----------------AGL3                                                                 --------->AHL20(2)                                          ------->MYC3         ----------->GT1   <-------GAMYB                                          ------->MYC2        <---------TOE1(3) --------->MYB52(2)           --------->ATHB12               <-------MYC2        <---------TOE2(3) --------->MYB111(1)<-        <---------ICU4                    <-------MYC3       ---------->DOF2    <---------MYB46(3) <-        --------->YAB1       --------->ANAC58          --------->AHL20(2)     <---------MYB52(1) <---      --------->GLK1(2)      --------->ANAC58         --------->AHL20(2)      <--------P <---------TOE2(3) --------->HVH21 <---------TOE2(3)      ------->TEIL  <---------AHL20(2)    <---------MYB46(3)  <----   gctgacataatcttgatttaagttttatagtatgcaactatgcatgtgtgttctaaataattttaaagttaataaaattggttagttgtataatgttgtt  1035200                                                                  --------->MYB52(1)                                                               --------->ANAC58         >>>>>>>>>RAP2.2                                     <---------ANAC58          --------->ANAC58         --------->TOE2(3)                         --------->CCA1(2)                     --------->ANAC46      --------->WOX13(1)          <---------AHL20(2)    --------->DAG2               --------->YAB1        <---------ATHB12         --------->AHL20(2)    ---------->DOF2    --------->HSFC1(1)             ------>ZmHOX2a(1)      ----------->TBP <---------TOE1(3)           <---------HSFC1(1)        --------->bZIP60(2) --------ANAC58       <---------TOE2(3)           --------->HSFB2a(2)       --------->ANAC58 --------ANAC58       <---------YAB1 <---------ANAC58     --------->WOX13(1)--------->ANAC58 ------At5g28300      ----------->ARR10  ----------->GT1------------>CBF    --------->ANAC46  <------ -------GT1       XXXXXXXXXXXXXXXXXXXX>MIR1888    <---------HSFB2a(2)------->GAMYB ------------>CBF -   accgtgctatatataatacaagttaagatttgagaaagtgagtgtgtgaattctagaagacaatcacacaacgaaaacacgtcctatcaatctaaacttt  1035300                                <----------ID1                      <---------ANAC58                      ----------->HVH21                             <---------ANAC58                - ----DOF2   <-------TEIL   ----------->GT1                  ------------>CBF       --------->At4g35610 ----------->CBF    <------------CBF                   ------------>CBF    ------->TEIL       <------   tgagcaattcaaaatgcatacgaattgacaggttaagacaaatctaaaaacattttcagcaattcaatttgcttacgaatttgacagcataagacaaatc  1035400                                                                                                 ----                                                                                                 ----                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                               <---------AHL20(2)----                       <---------ANAC58          <---------ICU4               --------->AHL20(2)-----                       <---------ANAC58         <---------YAB1            --------->AHL20(2)  -------                   <---------ANAC58           --------->YAB1            ----------->GT1      --------       --------->ZAT6  <---------ANAC46  <-------MYC2                  --------->DAG2    <---------ARR11(3) ------->GAMYB     <---------ANAC46      ------->MYC3       --------------->AGL15        --------->ARR11(3) --------->YAB1<------------CBF <----------DOF2 --------->ICU4        ---------->DOF2    <-----------ARR10 -------->MYB46(3) <---------ANAC58      ------->MYC2       <---------------AGL15  ----------->GT1 -- -----ARR10 ----------->TBP--------->ZAT6<-------MYC3     --------->TOE2(3)   <-----------TBP------->TEIL   taaccatcaccactacaaattgcttgcttacactcttttagcacgttgtcatcatttctaccctaaatatagaaaagtaaatttatagtaaaatctacct  1035500                                                                                  <------ZmHOX2a(1)                                                                             <---------HSFB2a(2)                                                                         ================HOX2a_HOX2a         <------NtERF2                                                   ------>ZmHOX2a(2)         <---------ZAT14                                                =================HOX2a_HOX2a         <---------At4g35610                                            <------ZmHOX2a(2) ----->MYB52(1)                                                        --------->ARR14(3) -->MYB83<---------ZAT2                                                <---------ARR14(3) ----MYB111(1)                                                         --------->ARR14(2) ----MYB111(2)                                                         --------->ARR11(3) ----MYB46(2)                                                          <-----------ARR10 ----MYB59                                                             <---------ARR14(2) -->MYB46(1)                                     <-----------HVH21     <---------ARR11(3) ---->MYB55(1)                                  <---------DEAR3(2)    <------ZmHOX2a(1) -->ANAC46    <-----------TGA1              <---------DEAR3(1)        <---------GLK1(2)   <---------ANAC58 >P      --------->At4g35610         <----------DOF2                <---------TOE1(2)     <---------ANAC58 ------->ZAT6 <-----------HVH21<---------ALFIN1 <---------SPL7--------->YAB1 --------->HSFB2a(2)   aacagtatggctgcagcgtcatcagtttcttctccaccgctttgcctcgccggtcgagtagctatagtcacaggatcttctcgaggaataggtcgtgcca  1035600                                                                                                    -                                                                                             ------>MYB46(1)                   --------->ALFIN1                                                        <---------MYB111(1)                 <---------ANAC58                                     --------->HSFC1(2)   <---------MYB111(2)                 <---------ANAC58        <-----------GT1              <---------HSFC1(2)   <---------MYB55(2)                --------->ZAT2        --------->MYB52(2)              <---------HSFB2a(1)  --------->MYB46(3)                <---------ZAT2      <---------MYB52(1)      <---------TOE2(3) --------->O2 --------->AtMYB61              ------>NtERF2         --------->DOF5.7(2)  <---------MYB52(1)   <---------DEAR3(1)    =     <---------ALFIN1            <------NtERF2           <----------CDC5     <---------LBD16 ------>MYB83    --------->MYB46(3)         <---------DEAR3(1)       <-------GAMYB --------->HSFB2a(1)--------->ANAC46   tagccatccaccttgccgagcttggggctagggtcgtcgttaattactcaactagccccgttgaggctgagaaggttgccacggcgattaccaccaactg  1035700                                ------->MYC2                                ------->MYC3                                <-------MYC2                                ------->PIF5                                <-------PIF5                                ------->MYC4                               --------->ANAC55(2)                               <---------TGA1a                    <------NtERF2                   ------>NtERF2<-------MYC3                   --------->LBD16                  <---------ATERF1(2)                  --------->DEAR3(1)                  --------->ATERF1(2)                 --------->ATERF1(1)                 <---------LBD16<-------MYC4                 <------NtERF2 <---------O2                 --------->RAP2.3(1)                <---------ATERF1(1)                <---------RAP2.3(1)                                   <-----------RAV1(2)              --------->ATERF1(1)                                  --------->ANAC58         --------->LBD16       --------->TGA1a                     --------->ANAC58        --------->ANAC58       --------->O2            --------->ARR11(3)        --------->ANAC58       --------->ANAC46        <---------ARR11(3)       <---------LBD16 ---------->DOF2      <---------REM1(1)    --------->DEAR3(1)<---------DAG2    <------ZmHOX2a(1)  ==================bZIP_DOF     --------->GLK1(1)            <----------DOF2 --------->DOF2<---------DEAR3(1) <-----------HVH21   <---------CCA1(2)     --------->DAG2 ========================================bZIP_DOF     <---------GLK1(1)    ---------->DOF2       <---   ttcaaaggacgcggaagtcgccggcaaaagtccacgtgtcattgtggtgaaggctgatatctcagagccgagccaggtaaagtcgcttttcgatgaggca  1035800                        --------->ARR14(2)                        --------->ARR11(3)                        <---------ARR11(3)                        <---------ARR11(1)                        <---------ARR14(2)                       <---------CCA1(2)                    <-------TEIL                 <---------DEAR3(2)                 <---------MYB46(3)                         --------->YAB1                <---------TOE1(2)                           <---------ICU4                <---------DEAR3(1)                         <---------YAB1               <---------LBD16                          ------>ZmHOX2a(1)                  <---------DAG2               --------->ATERF1(1)                   <------ZmHOX2a(2)                     <---------               <------NtERF2                        --------->ARR14(2)                  <---------ARR11(3)              <---------RAP2.3(1)      <---------At4g35610 <---------ATHB12         --------->At4g35610             <---------DEAR3(1)        --------->At4g35610 --------->ICU4       <-----------HVH21 ---NtERF2  --------->ATERF1(1)      ---------->CDC5<---------ARR14(2)         --------->bZIP60(2) --   gagcgagtcttcgagtcgccggttcatatcttggttaactcagcggctatagccgatcctaatcattccactatctcagacatgtcagtagaactttttg  1035900                                                                                  --------->AHL20(2)                                         <---------GLK1(2)                        <---------AHL20(2)                                       --------->ICU4                            --------->AHL20(2)                                       <---------YAB1                     <---------ANAC58                                  --------->YAB1                          ----------->GT1           <                                 <---------YAB1                           <---------ANAC58         <-                               --------->YAB1                             <---------ANAC55(2)<------- -DOF2   ----------->GT1      <---------AHL20(2)             <-----------GT1     <---------AHL20(2)-- ---->ZmHOX2a(2)              --------->AHL20(2)     ----------->GT1      <---------ANAC46 ----------   atcgcattatcaggttaattttaagaaactcatttattataaagattgtttcatttagttattttgcaactctataacgtgaatttaattagatagtgat  1036000  Previous    Next  AGI:  At3g04000.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G03980.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23495.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 1035507    to: 1036679    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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