Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 --------->YAB1                 --------->CCA1(2)       <---------ATHB12                 <-----------GT1     <---------ATHB12      --------->DAG2     --------->TOE2(3)     ---------->DOF2   <-------TEIL--------->GLK1(1)         <----------DOF2                      <-- --------->GT1<---------YAB1--------->WOX13(1)   ---------->DOF2  --------->ARR11(3)         -------- >At4g35610 --------->YAB1 <<<<<<<<<WRKY18--------->YAB1   ------->TEIL                    ----------   agggtaaaaaagtagcatgatacgattcgtcaatgagaaatcaatgataaaaaaagaaatgaactttagaacttgtccattacaactacacattcaagca  1010100                                                       <----------DOF2                                                      <---------ANAC58                                                      <---------ANAC46                                                      <---------ANAC58                              <                                                 <---------ICU4               ---------->DOF2     ---                                              --------->YAB1              --------->ANAC58   --------                                           <----------DOF2                --------->ANAC58--------->ANAC58 ----ZmHOX2a(1)                            --------->TOE2(3)          <-----------GT1     --------->ANAC58 ->ANAC46                ------>NtERF2  <---------ARR11(3)          <---------ATHB12      <---------ANAC55(2) >DOF2           ---------->DOF2        --------->ARR11(3)        --------->WOX13(1)  <-----------HVH21   ggaacaagctcattcatttcaaagctccgactacaaatcgaacatctttaatagttgctttcaaaaaccaattaacaagtaaaagctatgtcaagtaaag  1010200                                                                                                   --                                                                                                  ---                                                                                                -----                                                                                               ------                                                                 --------->AtMYB61           <-------                                                              --------->AtMYB61          <---------ARR14(2)                                                           --------->ANAC46              <---------ARR11(1)                                                         <---------ATERF1(1)             --------->ARR14(2)                         <---------HSFC1(2)              ------>NtERF2                   --------->GLK1(2)                         --------->HSFC1(2)             --------->DEAR3(1)               <-----------ARR10                         <---------HSFB2a(1)          <---------ATERF1(1)                ------->TEIL        --------->ANAC58 --------->HSFB2a(1)         --------->DEAR3(1)                 <---------ARR14(1)        --------->ANAC58--------->ARR14(2)           ------->GAMYB---------->DOF2    --------->ANAC46     --------->TOE1(2)  <---------ARR11(3)           --------->RAP2.6(2)           <---------ALFIN1<-    --------->DEAR3(2)  <-----------ARR10           --------->MYB46(3)            --------->MYB46(3)   ------->TEIL         <---------ARR14(2)         <---------ATERF1(1)       <---------ALFIN1-------- ---------MYB52(2)     <------ZmHOX2a(1)     ---------->DOF2  <---------ALFIN1------>ZmHOX2a(1)------ ------>MYB52(1)    <------ZmHOX2a(1)   --------->MYB46(3) <---------ALFIN1------>ZmHOX2a(1)<-------- -->DOF2--------->ANAC46--------->ARR11(3)  --------->AtMYB61--------->MYB46(3)  ------>ZmHOX2a(1)<--   aaacgaacccacgacttcgctaggaggaccttcgtctctaaaaccaccaaagcgaccgcctccaccaccaaagcgtcctcctcctccaccgaatctaccg  1010300                                                               <------NtERF2                                                              --------->ABI4(1)                                                             --------->RAP2.3(3)                    <---------ATERF1(1)                      --------->RRTF1(2)                   <---------ALFIN1                          --------->RAP2.6(2)                 ------>NtERF2                               --------->RAP2.3(2)                --------->RAP2.6(2)                          <---------ALFIN1                ------->GAMYB                                <---------ATERF1(2)               --------->MYB46(3)                            --------->RRTF1(3)               --------->DEAR3(2)                            --------->DEAR3(1)              ------>MYB46(1)                                --------->DREB2C(2)              -------->P<---------MYB55(2)                   --------->ATERF1(2)              ------>MYB83                                  --------->ERF1            <---------MYB59                                 --------->RAP2.3(1)           <---------HSFC1(2)                               --------->DEAR4(2)           --------->HSFC1(2)                               --------->RRTF1(1)           <---------HSFB2a(1)                              <------NtERF2           --------->HSFB2a(1)                              --------->ATERF1(1)           --------->DEAR3(2)                               --------->RAP2.6(1)          ------->TEIL<---------ALFIN1                      --------->ORA47(2)       <---------MYB55(2)    <-----------HVH21             ------>NtERF2       --------->MYB46(3)   --------->DEAR3(1)             --------->LBD16       <---------MYB46(2)--------->AtMYB61                 <---------ATERF1(1)       --------->DEAR3(1)<---------ALFIN1                  --------->ABI4(1)      --------->ANAC46--------->DEAR3(1)                  <---------ALFIN1    <---------ALFIN1------>NtERF2                         --------->ANAC46  ------>ZmHOX2a(1)--------->DEAR3(1)                     --------->DEAR3(1) ---->NtERF2<---------MYB46(2)                           <---------LBD16 ------>DEAR3(1)--------->ANAC46                    --------->GLK1(1) ->NtERF2------>MYB83 --------->AtMYB61             <---------GLK1(1) --->DEAR3(1)--------->MYB55(1)                    --------->ARR14(2) --At5g28300<---------MYB111(1)                 --------->ANAC58          <---------AtMYB61         < --------ATERF1(1)--------->ERF1                --------->ANAC46       <---------AtMYB61     <------- >P--------->MYB46(3)--------->MYB46(3)         --------->ANAC58    --------->ATHB12        <-------- ->GAMYB ------>MYB46(1)--------->MYB46(3)     --------->LBD16------>NtERF2             <-----------GT1 ---GT1<---------MYB52(2)--------->DEAR3(1)    <---------LBD16<---------ATERF1(1)   <----------DOF2 - -------ALFIN1--------->MYB52(1)      ------>ZmHOX2a(1)  --------->MYB46(3)        <---------ICU4   <   cctcctccaccgaacctaccgccaccaccaccgtctcgtcctccccttccacggaaacccccgccgcctctcattggtggtctcatcttttctcctttca  1010400               <---------ANAC46               <---------ANAC58     --------->LBD16    <---------ANAC55(2)   <---------LBD16 --------->GLK1(2)                                      ----------->GT1 --------->ARR14(2)                                    <---------TOE1(3) <---------ARR14(2)                                    <---------TOE2(3)  ------>NtERF2 ---------ARR14(2)                                 <----------DOF2       <---------O2 ----HVH21     <---------ANAC58        --------->At4g35610               --------->O2 --DOF2---------->DOF2                 <---------At4g35610               <---------DEAR3(1) -------->ARR14(2)             ------>NtERF2 <------ZmHOX2a(1)           --------->DEAR3(1) ---------GLK1(2)      <-----------GT1 ----------->RAV1(2)  <---------AHL20(2)         *TSS   -------   cagattccgcaaagactgcgttttttttctctctgcctctcttctgaggagggttttagggtttaattgagagcgacgacgctcaaatggtagaagactc  1010500                                                      --------->ARR11(3)                                                      <---------ARR11(3)                                          <-------GAMYB                                          --------->At4g35610                                         --------->MYB52(2)                                         --------->MYB46(2)                                       <---------MYB52(1)                                     <---------MYB46(3)                                     <------MYB83    <---------GLK1(1)                                     <------MYB46(1) <---------RVE1(1)          --------->ARR14(2)                                    --------->MYB59 <---------ARR11(3)          <---------ARR14(2)                                    <---------AtMYB61--------->GLK1(1)     --------->ARR14(2)                               --------->LBD16      --------->ARR11(3)     <---------ARR14(2)    <---       <---------TOE2(3)  ----------->HVH21         --------->ARR14(2)    ------>MYB46(1)       <----       <---------TOE1(3) --------->SPL7<--------P   <---------ARR14(2)    ------>MYB83     ---------- -->GLK1(2)            --------->TOE1(2) <---------MYB46(3)      <------------CBF          --------->WRKY12   tgggtatttagggtttttctgtaatcgttcgaccgggtttggttagttgaaccagatatctatctaacattgaaccaaatcggttctccatctctgaccg  1010600                                                       ------>ZmHOX2a(2)                                                      <------ZmHOX2a(2)                                                      --------->CCA1(2)                                                     --------->ARR11(3)                           ---                                                     <---------ARR14(2)                  <---------MYB46(3)                                                     <---------ARR11(3)                 --------->ALFIN1                                                     <---------AGP1                   <---------ANAC58                                            <---------ORA47(1)<---------YAB1          <---------ANAC58                                  ----------------->AGL1    <---------ICU4            <---------ANAC46                                 ------>ZmHOX2a(2)   --------->AGP1                   <---------MYB46(3)                                <------ZmHOX2a(2)    --------->ARR14(2)              <---------DEAR3(1)                               <---------ARR11(3)  ----------->ARR10                ------>NtERF2 --- ------MYB52(1)                --------->ARR11(3) <---------HSFB2a(2)     --------->ANAC58<---------ANAC58 ---GAMYB                     <---------GLK1(1)   --------->HSFB2a(2)     --------->ANAC46<---------ANAC58 ->HVH21            ---------->ID1<-----------------AGL1    --------->YAB1--------->ANAC58<---------ANAC46   ttacaagtgcttcttgaaatttgttgtttttgagatccctattttggacggtctagatctgatcatgactgtttatacgcaaaccgggccgtgggtgtaa  1010700                                                                  --------->ATHB51                                                                  <---------ICU4                                                                  <--------ATHB1                                                                  <---------AHL20(2)              ---                                                                  --------->AHL20(2)            <----                                                                 <---------YAB1                ------                                                                 --------->ICU4            <---------AHL20(2)       --------->MYB52(1)         --------------->AGL15        --------->YAB1 <-----------GT1  <----- ------>TOE2(3)            <---------YAB1                     <---------AHL20(2)          <---------AHL20(2) ------>TOE1(3)<------NtERF2      <---------------AGL15 ----------->GT1 ---------->ID1    --------->AHL20(2)   cattaaaactaatgggcctcatatatatcatcttagcccaatatagtgagaattcaaatagtaaataataatttgttttttttcattacaaattaaatat  1010800                                                                  --------->ARR14(2)       ---------->DOF2                                   <-----------RAV1(1)   ---------->DOF2                                   <---------AHL20(2)                          ---- ------>TOE1(2)                                    <---------AHL20(2)                      --------->ANAC58 -----YAB1                                  <---------At4g35610   <---------ARR14(2)       --------->ANAC58 --->ARR11(3)                   <---------MYB52(2) --------->AHL20(2)        <---------ARR11(3)  <--- ----ARR11(3)                 ---------->DOF2 <---------YAB1     <------ZmHOX2a(1)    ---------->DOF2   catgggaaagaaaggaacaacaagtcttgaagcaaagaacccagtctgatgatataaatttgttgcaggatactgtcaagaactcattcaaagacgaaag  1010900                                                         ---------->DOF2                                                      --------->HSFC1(1)                            -                                                      <---------HSFC1(1)                            -                                                      --------->HSFB2a(2)                      <-----                                                      ------>ZmHOX2a(1)--------->DAG2    <------ZmHOX2a(1)        --------->At4g35610                           <---------HSFB2a(2)               --------->ZAT18   <---------HSFB2a(2)                          -------->ATHB1        ---------->DOF2 --------->At4g35610 ----->ARR11(3)                 ----------->GT1 <---------ICU4   ----------->GT1      <---------At4g35610 ------ARR11(3)        --------->At4g35610     --------->ICU4 --------->CCA1(2)   <-----------HVH21 -   atgttgtcgaagcagaagtagaagaagcagagaagagtaagaaaacagaattattcctagaaagatagggcaaaaagagaccaatgtgagaggactactt  1011000  Previous    Next  AGI:  At3g03920.1    Description:  Gar1 RNA-binding region family protein. Identical to Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Arabidopsis Thaliana] (GB:Q8VZT0;GB:Q8LG22;GB:Q9S715); similar to Gar1 RNA-binding region family protein [Arabidopsis thaliana] (TAIR:AT5G18180.1); similar to Os11g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068150.1); similar to hypothetical protein OsI_035378 [Oryza sativa (indica cultivar-group)] (GB:EAY81419.1); contains InterPro domain Gar1 protein RNA-binding region; (InterPro:IPR007504) Range:  from: 1009002    to: 1010487    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version