Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->ANAC46                 --------->ANAC58                 --------->ANAC58              ------>MYB46(1)            ---------->DOF2            <---------ALFIN1          <---------At4g35610            --------->AtMYB61         --------->At4g35610          ------->GAMYB            <---------MYB55(2)        --------->ZAT2              --------->MYB46(3)             <--- ------->ANAC46  --------->LBD16      <---------ZAT2             <---------At5g28300          ------- --------GT1--------->MYB46(3)     --------->LBD16              <-----------GT1  <---------ARR14(2) --->AHL20(2) -------->P      <----------DOF2                   --------->MYB52(1)      <---------MYB46(3) ----AHL20(2) ------>MYB83 <---------ARR11(3)          --------->GLK1(2)         --------->ARR14(2)   aacaccatcttccaccagcccgaaatcgagctctttccccagctaaagaaccctaagaatccaaattaaccgtcgaaaattcaaatccagtcgttcacag  976000                                                             <---------WRKY12                                                            --------->WRKY18(1)                                                        --------->LBD16                                                       <---------LBD16                                                     --------->CCA1(2)                                                     <------ZmHOX2a(2)                                          <---------ATHB12 <-----------HVH21                           --------->At4g35610      <---------ARR11(3)                           --------->HSFC1(2)       --------->ARR11(3)                           <---------At4g35610      --------->AGP1           <---------YAB1                           <---------HSFC1(2)       <---------ARR14(2)     --------->YAB1                          --------->GLK1(2)         --------->ARR14(2)     <---------ICU4   --------- ------GLK1(2)  <---------LBD16 <---------DAG2     --------->GLK1(1) --------->At5g28300    --------- -->ANAC46----------------->AGL1<----------DOF2   ----------->ARR10 ----------->GT1---------->DOF2   aatttcaaaaattccaaactcggagaagaagctgctttacccaaatcaaggcgagatccagggtcaaacgaggtaaatgatcactgaaagagcctcgaaa  976100               <---------YAB1              ------>ZmHOX2a(2)                                  XXXXXXXXXXXXXXXXXXXX>MIR837-3P             <------ZmHOX2a(2)                            <------ZmHOX2a(1)            --------->GLK1(2)                           --------->LBD16            <---------AGP1                             --------->HSFB2a(2)            --------->ARR14(2)                         <---------LBD16                         ======            --------->ARR11(3)                         <---------HSFB2a(2)                  <------ZmHOX2a(1)            <---------ARR11(3)                         <-----------RAV1(2)               <---------At4g35610    --------->ANAC58                               <----------DOF2                       --------->At4g35610    --------->ANAC58                              <---------HSFC1(2)                     <------NtERF2   <---------ZAT18                                --------->HSFB2a(1)                --------->AtLEC2   --------->ZAT18 --------->AHL20(2)   <---------CCA1(2)--------->LBD16           <-----------RAV1(2) >ANAC58    <---------ARR14(2)   --------->GLK1(1)<---------HSFB2a(1)           ----------->HVH21 >ANAC58   <------ZmHOX2a(1)     <---------GLK1(1)--------->HSFC1(2)           --------->LBD16 <-----   cgaagcacgcttaggatctgattaaaaaactggagatttctcgcatcttcgaactttccaggagaaaacaaacaaaaaacccgtgccaggcagaggagga  976200                        ====================================HOX2a_HOX2a                        ==============HOX2a_HOX2a                                  --------->GLK1(1)                        <------ZmHOX2a(2)                                       --------->LBD16                        =========================HOX2a_HOX2a                   <---------HSFB2a(2)                       --------->ARR11(3)                                      --------->HSFB2a(2)                       --------->AGP1                                          <---------HSFC1(1)                      <---------At4g35610                                <---------ARR11(3)                      --------->At4g35610                                --------->ARR11(3)         <---------AHL20(2)                                        ----------->HVH21                -         --------->AHL20(2)                                --------->ANAC58    --------->HSFC1(1)   <        --------->AHL20(2)                            <----------ID1     <---------GLK1(2)          -        <---------AHL20(2)     <------ZmHOX2a(1)      <----------ARF1    --------->ARR14(2)         < ==============================HOX2a_HOX2a           <------ZmHOX2a(1)   <---------ARR14(2)  -------- -ZmHOX2a(1)      <-----------HVH21       <------ZmHOX2a(1)--------->ANAC58   <---------LBD16--------   agtagttgaatttaattcagagtcagatcaagaggaagagagaaggagacttataggagacaagactcactgacagattttccagaaatcgaagaacgca  976300                                <----------DOF2                           <-------GAMYB                      =====================bZIP_DOF                 ------>ZmHOX2a(1)                --------->TOE1(2)                --------->TOE2(2)               <---------ANAC58<---------ANAC58               ----------->RAV1(2)       <---------YAB1 =============MYC_MYB     --------->YAB1   --------->TGA1a <---------AHL20(2)   ===============MYC_MYB --------->AHL20(2)   <---------TGA1a                             ------->TEIL -------->AHL20(1)    =============MYC_MYB                        --------->GLK1(1) ---------AHL20(2)    <---------O2                          <---------YAB1                <---------ZAT14 -------->AHL20(2)    --------->O2                  <---------ZAT14                       --------->ZAT14 ---------AHL20(1) ----------->HVH21                --------->ZAT14                   --------->ZAT6 ->ANAC58      <---------ANAC58<---------ANAC58     <---------ZAT18       *TSS   --------->ANAC55(2) ->ANAC58    <-----------GT1<--------P   ------->GAMYB     --------->AHL20(2)  <-----------GT1   aatttatttatgatttttcctgcgacgagggttgctttgttaacagacaaactctgcacaatattatgaactccagtttattcacttgactctacagtag  976400                                                           ------------>CBF                    <-----                      ------------>CBF                     <---------ATHB12                <---------TOE1(2)            --------->ARR11(3)                      <---------ARR14(2)                     --------->LBD16            <---------ARR14(2)                      --------->ARR14(2)                    --------->LBD16            <---------GLK1(2)                      ------>MYB46(1)          --------->ATHB12---------          ----------->ARR10     <-------GAMYB      ------>MYB83            <---------YAB1 <---------LBD16    ------->GAMYB    <-----------GT1             <---------MYB59<---------AHL20(2)       <---------LBD16   cgataaccggctcagattttggtttacaattctcggttgaaaacaaaaataccaaatccctatcaatttatcgaaatttgattagtattttccccggttc  976500                                    <---------LBD16                                         ---------                          ----------->RAV1(1)                                               ---------                         <---------ETT(1)                                                 --------->GLK1(1)                         <----------ID1                                                   <---------GLK1(1)                         --------->DREB2C(2)                                          XXXXXXXXXXXXXXX                         ------->GAMYB                                          <----------DOF2    <-                        <------------AtMYB77                                    --------------->AGL15                        --------->MYB46(3)--------->ARR14(2)                   <-----------------AGL1                        --------->DEAR3(2)<---------ARR14(2)                   <-----------------AGL2                      --------->MYB52(1) --------->GLK1(1)                     ----------------->AGL2 <-----------GT1  --------->HSFB2a(2)    <---------CCA1(2)       --------->LBD16<---------------AGL15 --TEIL           <---------HSFB2a(2) --------->LBD16          <---------LBD16 ====================== >LBD16           >>>>>>>ZML2---------->DOF2          ---------->DOF2          <-----------------AGL3   atttatctgtacgattagttctagtaaccgacaaagaaaccgggtatctagtatgtaaaagtaaacccggtttagactcattctttaactggaaacccaa  976600                                 --------->ATERF1(1)                                <-----------HVH21                               <---------ANAC58                      <---------ANAC55(2)                   <------MYB83<---------DEAR3(1)             <-----------TGA1                   ----------->GT1 <---------MYB46(3)         <-----------HVH21                   <------MYB46(1)<---------DEAR3(1)         --------->bZIP60(2)       --------->LBD16         <---------ANAC46              <---------ANAC58     <---------LBD16      <---------ICU4                     <---------ANAC58               <--------  <----------DOF2 --------->MYB59<------NtERF2              ------>NtERF2                   <-------- >ANAC58          --------->MYB111(1)                    --------->At4g35610  ----------------->AGL1 >ANAC58          <---------TOE1(2)<---------DEAR3(2)    <---------At4g35610  <---------LBD16 XXXXX>MIR779.2  <--------P    <---------bZIP60(1)    <---------At5g28300     <-----------------AG  < ----------GT1 --------->YAB1  <---------ANAC58      <-----------GT1 <---------ANAC46 ----------->GT1 ===============================================================================================MADS_MADS   ttgactttccggttcaatggtaggttatttatggcgtcggttcaattgacaccatttaccgctgcgtcactacgtataaacccggtttgggtaaattatt  976700                                                                                                   <-                                                                                                  ---                                                                                                <----                                                                                                <----                                                                                                -----                                                                                             --------                                                                                             <-------                                                                                      --------->ARR11(3)                                                                                      <---------ARR11(3)                                     <----------DOF2                                 --------->GLK1(1)                                  <---------ARR11(3)                --------->At4g35610     <--------                                  --------->ARR11(3)           --------->ANAC46      <---------GLK1(1)                                  --------->GLK1(2)           <-------TEIL   --------->ARR14(2) <---- -ATHB51                ----------->RAV1(1)               --------->ARR11(3) <---------ARR14(2) ----- -AHL20(2)    <---------GLK1(2)  <---------GLK1(2)        <---------AHL20(1) --------->GLK1(2) <----- ------ZmHOX2a(2)    <XXXXXXXXXXXXXXXXXXXXMIR172C/D----------->GT1  <---------At4g35610  <----------DOF2   cgatcatttattctctgattctgtagcaacatgaagaatctttagtatagaaactgttaatatatacatcagctaaacaaatctgagaaatctttctgga  976800                                                                 <---------ARR11(1)    --------------------->WRI1                                   --------->ARR11(3) ---------DOF2                                               <------ZmHOX2a(2) --->ZmHOX2a(2)                                             <---------ARR11(3) -----AGP1                                               --------->HSFC1(1) -----ARR14(2)                                           --------->HSFB2a(2) ---->ARR14(2)                                           <---------HSFB2a(2) ->HSFB2a(2)                                       --------->ARR11(3) --HSFB2a(2)                                       <---------ARR11(3) -LBD16                                          <---------ARR11(3) -----ARR11(3)                  <---------AHL20(2)--------->GLK1(1)           ---------->DOF2 ---->ARR11(3)                  --------->AHL20(2)<---------GLK1(1)    --------->ATHB12 <---------AHL20(2) ----CCA1(2)          --------->AHL20(2)     --------->ANAC55(2)<---------CCA1(2)  ----------->GT1   tcttttgtttgatttcatcgttcattaaacacaaaaaattggcatttacatgatatcttctagatcaaatctttcattgagaaagatgaaaaaattgtta  976900  Previous    Next  AGI:  At3g03810.1    Description:  EDA30 (embryo sac development arrest 30). similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30300.1); similar to putative auxin-independent growth promoter protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85168.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23214.1); similar to hypothetical protein OsI_017673 [Oryza sativa (indica cultivar-group)] (GB:EAY96440.1); contains InterPro domain Protein of unknown function DUF246, plant (InterPro:IPR004348) Range:  from: 971679    to: 976374    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version