Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    --------->ANAC58         <---------ZAT14    ------->GAMYB                     <-----------HVH21         <---------AHL20(2)     --------->ZAT6        --------->ANAC46         --------->AHL20(2)                  <---------YAB1  <-----------GT1         <---------LBD16-------->P <---------YAB1--------->ANAC58   --------->AHL20(2) -->At4g35610      --------->ICU4       <-----------GT1 --------->YAB1          <-------TEIL  <------ -WRKY12 --------->ZAT14 --------->MYB52(1)         <---------AHL20(2) --------->ICU4<---------AHL20(2)   aaaattaccagtaaactagtactaattcaacggaattaagttctaccagcttatataattgtaatgtcatgccatgatcaaatacatttttttattatgt  956800                                           <---------ANAC58                                           <---------ANAC58                                          -------->ZAP1                                          --------------->AtSPL8                                         <---------At5g28300                                      <---------WOX13(1)                                           --                                   <---------YAB1                                                  --                        ---------->DOF2--------->WRKY12                                            --                     --------->HSFB2a(2)<-----------GT1                                            <-                     <---------HSFC1(1)----------->HVH21                               <-------TEIL--                     <---------HSFB2a(2)<---------WRKY18(1)                 <---------YAB1         --           --------->ANAC55(2)     <---------AHL20(2)               <---------ICU4   --------->ARR14(2)           <---------ANAC55(2)     --------->AHL20(2)              --------->ICU4 --------->HSFB2a(2) ---ANAC55(2)  <---------YAB1----------->GT1  <---------ZAT18 ----------->GT1     <---------HSFB2a(2)   aaaccgtcgttatacgtataattctcgaaagttgtatataattgaccgtgcccttaaatttgaaagataaaaattagtatcattctggatacatggatta  956900                                                                                     --------->AHL20(2)                                                                                     <---------AHL20(2)                                                                                    <---------AHL20(2)             <---------YAB1                                                         --------->AHL20(2)           --------->YAB1                                                       <---------YAB1           <-----------GT1                                             <---------------AtSPL3       <---------AHL20(2)                                            <-------TEIL  <---------YAB1      <---------YAB1                                    --------->ANAC55(1) --------->ANAC55(2)     <---------AHL20(2)                                 --------->ANAC55(2) <---------ANAC55(2)  ------->TEIL--------->YAB1                            <---------ANAC55(2)<-------TEIL ------->ANAC55(1)                     --------->At5g28300 ------->TEIL<---------------AtSPL8 ------- ------->ANAC58                       ----------->GT1   --------->ANAC46   ------->TEIL  <---------AHL20(2) ------->ANAC55(2)           <---------REM1(1) --------->TOE2(3) --------------->AtSPL8  --------->AHL20(2) --------ANAC55(2)        <-----------RAV1(1)  <---------MYB59   <---------------AtSPL8<------------- ------->ANAC46          <---------TOE2(3)     --------->TOE1(3) --------------->AtSPL3-------------- ------->ANAC58    ----------->GT1   ----------->GT1   <-------TEIL  ------->TEIL<--------HAHB4    --   cacgtatttttatttatcatatagtataatgttgtagagagggtaaaaacctaaatatacgtattttgatgtacatgtacgtattattaatttaaataga  957000            <---------ALFIN1       --------->At4g35610                <---------ANAC46                     <---------ZAT14      --------->ANAC46             <---------MYB52(2)                          <---------ZAT18  --------->YAB1                  --------->ANAC46                             --------->ZAT14 ---->GT1 ------>NtERF2           --------->ANAC58                         --------->ANAC46 --AGL15 --------->RAP2.6(2)      --------->ANAC58                  --------->TOE1(3) ->AGL15--------->MYB46(3)      --------->TOE1(2)  --------->ATHB12 --------->TOE2(3) ------->YAB1                   --------->TOE2(2)<---------WOX13(1)--------->At4g35610              <   aaaataatcagccaccacgagtgagtgagagaaaccaaggaacgatgtgtaattgatttgctataaataagcttaacacagaacactctccatcgtcgct  957100                                          --------->ANAC58                                          --------->ANAC58                                       <---------SPL7                                     --------------->AtSPL3                                     <---------------AtSPL3                                     --------->MYB59                                     --------->DAG2                                    --------->SPL7                                 <---------ANAC55(2)                                 --------->ANAC55(2)               <---------AtLEC2                                 <---------ANAC58                 --------->LBD16                                 <---------ANAC46             <---------SPL7                                 <---------ANAC58            <---------ANAC58                   <---------ALFIN1<---------MYB52(1)        <---------ANAC58        <---------CCA1(2)  <---------YAB1<-------TEIL   <---------AtLEC2   <---------YAB1 ----------DOF2--------->At4g35610--------->LBD16--------->LBD16<---------LBD16               <------   ctctttgcccatctctcatctccactcttctcattccgtaaggtacgcttccgagtttccatggcttccgcatgactattcttgctctctcccttcccac  957200                                                                                  <---------AGP1                                                                                  <---------ARR11(3)                                                                       <---------MYB52(1)                                                                     ----------->GT1------>ZmHOX2a(2)                                                                     <---------MYB46(3)                                                                     --------->MYB52(2)        <-----                                                                    <---------TOE1(2)        <-------                                                         --------->ARR14(2)       --------->AGP1-----               <---------CCA1(2)                         <---------ARR14(2)       --------->ARR11(3)             <---------ANAC58               <---------ANAC58       <---------MYB52(1)       ---------             <---------ANAC58               <---------ANAC58 <<<<<<<<<TBF1       <---------CCA1(2)           ------>MYB46(1)                *TSS          <---------MYB52(1)      ----------->ARR10      <-----------GT1               ------------>CBF  <---------ANAC58<-------GAMYB<------ZmHOX2a(2) ---ALFIN1 ------>MYB83        ------------>CBF       <---------ANAC58--------->TOE2(3)   <---------LBD16   tctcttatttaccttccgtctcttcgttttcttctcaattcaattttcgtttgattccgtttcttcttcgttcgttaatacttagatcttaatccggtga  957300                                                                                  <<<<<<<<<GATA-3                                                                                  <------ZmHOX2a(2)                   --------->CCA1(2)                                             --------->ARR11(3)                   <------ZmHOX2a(2)               --------->RVE1(1)             <---------AGP1                  <---------AGP1                  --------->ARR11(3)             <---------ARR11(3)                  --------->ARR11(3)              <---------ARR11(3)            <---------CCA1(2)                  --------->ARR14(2)        ----------->GT1                  <---------MYB52(1)                  <---------ARR14(2)       <-------TEIL                     <-----------HVH21   --------->GLK1(2)------>ZmHOX2a(2)    <---------ARR14(2)        <----------DOF2<<<<<<<<<GATA-1 ----MYB46(3)     --------->AGP1         <---------GLK1(2)        ------>ZmHOX2a(2)------>ZmHOX2a(2) --MYB52(1)       <---------ARR11(3)     --------->ARR14(2)      <------ZmHOX2a(2)<<<<<<<<<GATA-4 ------>GT1      <---------CCA1(2)     ----------->ARR10        --------->ARR11(3)<<<<<<<<<GATA-2 >LBD16         ----------->ARR10    <------ZmHOX2a(2)          <---------ARR11(3)<---------GLK1(1)   gtgaaattctatgaaacacagatctggattttttatacgatcagattcgtaaaatctctgttttgcgatctttctctgcgttagatctctgttttcccta  957400                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                            <------MYB83                                                                                            <------MYB46(1)                                                                                           <---------MYB46(3)                                                                                           <---------AtMYB61                                                                                        --------->ATHB12                                                  --------->ANAC58                     <---------YAB1                            --------->YAB1        --------->ANAC58                    <---------TOE1(3)                    <-----------GT1               --------->ANAC46                    <---------TOE2(3)                <----------DOF2                   <----------ID1               <----------DOF2  <----             --------->ARR11(3)              <---------ICU4                    <---------DAG2 <------             <---------ARR11(3)             <---------ATHB12                <-----------GT1--------->MYB55(2) <---------YAB1------>ZmHOX2a(2)            --------->AHL20(2)     ---------->DOF2   <-----------GT1   gttgtgattcgttttgatctttaaactctctcatactctgttttcaataaatacgacaaaaaaaactgcaaaagttttttacttttttaacgattggtgg  957500                                      <------MYB83                             >>>>>>>>>ARR2        ----------->HVH21    >>>>>>>>>ARR1 <-----------GT1             >>>>>>>>>ARR1 --------DOF2                >>>>>>>>>ARR2 ------ANAC46               <------ZmHOX2a(1) ------ANAC58              <---------YAB1 ------ANAC58             <---------TOE2(3)     <---------WOX13(1) --NtERF2          <-------TEIL  <---------YAB1 <-----------------AGL2         ----------->GT1 ---RAP2.6(2)  <---------------AtSPL8 <------MYB46(1)               <---------MYB46(3)<----------ID1   cttttaccatatgacaagaagtacattttaggattgtgtttggtttactgactgattttggttttgtttgtggttcaaatgtagtaaaaaaacaaaaaac  957600                                          <---------MYB59                                          --------->TOE1(2)                                       <---------PCF2                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                --------->ANAC58                                --------->ANAC46                                --------->ANAC58                           <---------ARR14(2)                                             --------->ZAT14              <---------ALFIN1--------------->AGL15                          <---------HSFB2a(2)         <---------ANAC58  --------->ARR14(2)       --------->At4g35610      --------->HSFB2a(2)    <         <---------ANAC58 --------->GLK1(1)         <---------At4g35610     <---------LBD16       <--    <---------ICU4        <---------GLK1(1) --------->MYB52(1)           <----------DOF2  <---------ZAT14   aaacaaaaatggcttcccacattgttggatatccacgtatgggacctaagagagagctcaagtttgcattggagtctttctgggatggcaagagcagtgc  957700  Previous    Next  AGI:  At3g03780.1    Description:  AtMS2 (Arabidopsis thaliana methionine synthase 2); 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase. similar to ATMS3 (METHIONINE SYNTHASE 3) [Arabidopsis thaliana] (TAIR:AT5G20980.2); similar to ATCIMS (COBALAMIN-INDEPENDENT METHIONINE SYNTHASE) [Arabidopsis thaliana] (TAIR:AT5G17920.2); similar to ATCIMS (COBALAMIN-INDEPENDENT METHIONINE SYNTHASE), 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase [Arabidopsis thaliana] (TAIR:AT5G17920.1); similar to methionine synthase [Solanum tuberosum] (GB:AAF74983.1); similar to 5-methyltetrahydropteroyltriglutamate--homocysteine methyltr Range:  from: 957242    to: 960987    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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