Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           <---------STY1(2)                                                         --------->STY1(2)                                                 <---------At4g35610                                                 <---------ZAT18                                                 --------->At4g35610           --------->ANAC58                      <---------ZAT14           --------->ANAC58                      --------->ZAT14   --------->At4g35610                           --------->ZAT18   <---------At4g35610                         <---------ZAT18               <---------ARR14(2) -------->At4g35610                            --------->ZAT14               --------->ARR14(2) ---------At4g35610     --------->YAB1      <---------ANAC46--------->MYB52(1)<-----------GT1 --------->RAV1(1)   --------->YAB1         ------>ZmHOX2a(1)       --------->ANAC46  ------>ZmHOX2a(1) ----->At4g35610<---------ATHB12        <---------ARR14(2)  -------->P     <---------KAN4(2) ------At4g35610--------->ICU4          --------->ARR14(2)  <---------At5g28300     ----------->RAV1(2)   gcagcagctactccagcaatgaagaatgatacagcaagagcaggtcctgtgtgctctctagctaccgttcccacaagaatatacactcctgctccaattg  929500                                                    <------ZmHOX2a(1)                                           ------->GAMYB                                       --------->YAB1                                      <---------ATHB12          <---------YAB1            <<<<<<<GRF7              --------->ANAC58         --------->YAB1          ------>ZmHOX2a(1)          --------->ANAC58        <-----------------AGL1          ----------->HVH21 --------->ANAC58      --------->ANAC58        ----------->RAV1(2) --------->ANAC58      --------->ANAC58                   <----------DOF2    <---------ALFIN1      ---------->DOF2 <---------ALFIN1<---------YAB1 ---------->DOF2   ttgtcccaactcctgacaaattaacaccgaaaggaacacaatcaacacccataaggaattttgatcaaaattggccaaagcttgaagctttctcatacca  929600                   --------->ARR14(2)                   <---------ARR14(2)                  <------NtERF2                 <---------MYB46(3)                <---------ANAC46              ------->GAMYB             <---------DEAR3(1)           --------->MYB52(1)        --------->At4g35610          <---------WRKY12        <---------ZAT2         <------ZmHOX2a(2)        --------->At4g35610        <---------ARR11(3)<---------ANAC58              --------->YAB1        --------->ARR11(3)<---------ANAC58   <-------TEIL <----------ID1<---------LBD16    <---------At4g35610  <---------YAB1   atagcaacaagatcaacggcggatagtttcttggcaagctgatgaggtccatcgtttttgataagatgaacagaatcaacttgttttcttctcacaagac  929700              <----------DOF2            ------>MYB46(1)            ------>MYB83          ------->GAMYB <---------ZAT14                                        --------->LBD16         --------->MYB46(3) --------->MYB52(1)                                <---------HSFB2a(2)         <---------MYB55(2)--------->ANAC46                                   --------->HSFB2a(2)        -------->P      --------->ZAT14                                      <---------LBD16  -------        --------->ANAC58<---------ZAT18                          ----------->RAV1(2)       ----------        --------->ANAC58--------->ZAT18 <-----------GT1          <---------At4g35610    ----------->RAV1(1)       --------->WOX13(1)  <---------ALFIN1   <---------ATHB12   --------->At4g35610--------->GLK1(2)   tgttcatatcaaccaactttgcagagtccacaccggtttgattttccaatcgattcagagcaaacccatctgagtttttcccagaaaatccaacaaagat  929800                                            <------NtERF2                                         --------->ATERF1(1)                                         <------NtERF2            --------->ANAC58                                        <---------ATERF1(1)       --------->ANAC58                                  --------->MYB52(1)           --------->ZAT18                                  --------->GLK1(2)            <---------ZAT14                     --                                  <---------ARR14(2)           <---------ZAT18                   ----                        <-----------RAV1(2)--------->LBD16    --------->ALFIN1                <------MYB83                      ----------->RAV1(1)<---------LBD16    <---------ANAC46          --------->GLK1(2)                  <---------ARR14(2)    ------>NtERF2       <---------ANAC58         <---------GLK1(2)                  --------->ARR14(2)   <---------ARR14(2)   <---------ANAC58<----------DOF2   <------MYB46(1) -->ATHB12        --------->GLK1(2)    --------->ARR14(2)  <-----------------------TaNAC69(2)<------- >DOF2           <---------GLK1(2)--------->ARR14(2)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <-------   tgaaattttttcttctacagaatccaccagatggagtatcggagccggagataactcgagaggcgtgcacgattccaacttttgtgagattctcgttggt  929900        ---------->DOF2  --------->GLK1(2) --------->ARR11(3)                                     ------------>CBF <---------GLK1(2)                                <---------YAB1 <---------ARR11(3)                               --------->AHL20(2) ------->ICU4               <------------------------ANAC81<------------CBF       <---------WRKY38(1) ------>DOF2          <----------DOF2             <---------AHL20(2)      ------------>CBF --TOE2(2)      --------->At4g35610            *TSS    <-----------GT1    --------->ZAT18 --TOE1(2)      <---------At4g35610            <----------DOF2            <---------ZAT14    <-------TEIL   aaagattcttcaaagtttagatgacttttgtgattttgtttatttcttcctttttattaacaattgggctaatttgtgcaatgggcaactcttgattcat  930000                                                                                                   <-                                --------->ZAT2                                                     <-                                <---------At4g35610                                                <-                                <---------ZAT2             <---------DAG2                          --                    <-----------GT1                        <----------DOF2                         --          ------>ZmHOX2a(1)     --------->At4g35610     <-----------GT1                            <-         --------->TOE2(2)  --------->AtMYB61       <---------GLK1(2)        --------->At5g28300  <--         --------->TOE1(2) --------->ANAC46         <---------ARR11(3)      ----------->GT1    ------         --------->TOE2(3)------->TEIL         --------->MYB52(1)      <-----------HVH21<---------WOX13(1)        --------->YAB1   <---------ALFIN1      <-----------GT1   <-----------GT1 --------->ICU4<-----   gaattctctatcctaagagatttatctgcacctcagcttaaaaacagattaacagattttactttttttacaatgtcacagtaaaaattgatggacatgt  930100            --------------->AGL15            <---------------AGL15           ----------------->AGL2           ----------------->AGL3           ----------------->AG ------>ZmHOX2a(2)                                                          <-----------GT1 --------ARR11(3)                                                        <---------ICU4 --------ARR14(2)                                                        --------->YAB1 --------AGP1                                   --------->ANAC58        <---------ATHB12 ------->ARR14(2)                     <---------YAB1                <---------ATHB12 ------->ARR11(3)            ----------->GT1    --------->ANAC58   --------->ANAC58 ----------ARR10         --------->At5g28300   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -------CCA1(2)      --------->MYB52(1)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ->MYC3    ----------------->AGL1   --------->YAB1                 --------->ANAC58 --MYC3<----------DOF2  ----------->GT1<-----------GT1            --------->WOX13(1)                -   ggatcttctctttaccaaaaacagaacggtaatgtaaattataacagattacgcccaaatgttatagacaatcaataatcacccgtctaatctccaattc  930200                                                   <---------ARR14(2)                                       --------->DAG2       --------->HSFB2a(2)                                      ---------->DOF2       <---------HSFB2a(2)           <---------DAG2      <---------MYB52(1)         ---------->DOF2   --------->ARR11(3)          --------->ARR14(2)     <----------DOF2         <---------AHL20(2)    --------->ARR14(2)          <---------ARR14(2)     ------>ZmHOX2a(1)    --------->AHL20(1)    --------->MYB46(3)          --------->AHL20(2) -------->WOX13(1)        <---------ARR11(3)  ----------->RAV1(1)       ---------->DOF2   <----------DOF2   atcaatcctttagtccaaaacacttgaatatataaaaaagaaaagttgcaacaaatcttgttccagtacaaaacaaaagaaaatactccaaactttacca  930300                                                       ---------->DOF2                                                 --------->At4g35610                       --------->ANAC58  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                       --------->ANAC58 --------->TOE1(2)                       --------->ANAC46<---------HSFC1(2)   --------->CCA1(2)          <---------WOX13(1)               --------->MYB59         --------->MYB46(3)  --------->ARR11(3)          <--------P               <---------TOE2(3)       --------->HSFC1(2)  --------->AHL20(1)         <-------GAMYB               <---------TOE1(3)       <---------HSFB2a(1) <---------ARR11(3)        <---------MYB46(3)   agagacaaaacttgatttaggtttgaagcaactatttaagaaccatcgagcagaagagaaagatattggagacgaagcagtaagagctggttgatacact  930400  Previous    Next  AGI:  At3g03720.1    Description:  CAT4 (CATIONIC AMINO ACID TRANSPORTER 4); cationic amino acid transmembrane transporter. similar to CAT2 (CATIONIC AMINO ACID TRANSPORTER 2), amino acid transmembrane transporter [Arabidopsis thaliana] (TAIR:AT1G58030.1); similar to CAT3 (CATIONIC AMINO ACID TRANSPORTER 3), cationic amino acid transmembrane transporter [Arabidopsis thaliana] (TAIR:AT5G36940.1); similar to Amino acid/polyamine transporter I [Medicago truncatula] (GB:ABD28534.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67513.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67511.1); contains InterPro domain Cationic amino acid transporter (Inter Range:  from: 925619    to: 929947    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g03721.1    Description:  pseudogene of F-box family protein Range:  from: 930295    to: 930981    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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