Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        <---------HSFB2a(1)                                         <---------ALFIN1             --------->HSFC1(2)                                        --------->ZAT18               --------->HSFB2a(1)                                        <---------ZAT18   <---------At4g35610                                       --------->ANAC58   --------->At4g35610                                       --------->ANAC46  <---------ARR11(3)     ----------->GT1                                       --------->ANAC58  --------->ARR14(2)   <---------WOX13(1)                            --------->ANAC58             <---------ARR14(2)<---------YAB1                            --------->ANAC58             <---------AGP1<----------DOF2  ----------->GT1        ----------->HVH21  <----------DOF2------>ZmHOX2a(2)--------->ATHB12     <--- ------HSFB2a(2) <---------GLK1(2)  <---------REM1(2) --------->ALFIN1<---------HSFC1(2)         ----   cagaaggtaaacccctacagaattgctctcacgctctctacgcgcactttgtgagagtggatctgaaatagaactttctgattggctaaaaaactctaaa  919100                                                       --------->ANAC58                                                       --------->ANAC46                                   --------->AHL20(2)---------->DOF2                                  --------->ICU4  --------->ANAC46                                  <---------YAB1<---------HSFB2a(2)                               <---------YAB1   --------->HSFB2a(2)                  <----------DOF2 ------AHL20(2)      <---------ANAC58      <----------DOF2                         <---------At4g35610 ----->AHL20(2)      <---------ANAC58  <-----------GT1 --------->ANAC58     ------>ZmHOX2a(2)     ---   aaaatagcaatagtagacatgttgctagctcttgttattatttagcttttctacaaaacgcagtcgtttctatttcgatcgtttcagcttttgacattga  919200                                                                                                 ----                                                                                                 <---                                                                                              -------                    <---------ANAC58                                                         --------                    <---------ANAC46                                                    <---------AHL20(2)                 ------->GAMYB                   --------->ARR11(3)                    --------->YAB1               --------->At4g35610               <---------ARR11(3)                 <---------AHL20(2)       <---------ATHB12                         --------->CCA1(1)                   --------->AHL20(2)      ------>MYB46(1)                           --------->RVE1(1)                 --------->AHL20(2)      ------>MYB83  <---------ANAC58   <---------ANAC46                      --------->At5g28300<----      --------->MYB52(1)               ----------->GT1                      ----------->GT1  <-------   --------->MYB46(3)                 <-------TEIL                     --------->AHL20(2)<---------AHL20(2) --->ZmHOX2a(2)<---------At4g35610  <---------GLK1(2)                  <---------AHL20(2)--------->AHL20(2)   tccgaaccaatcggttcaactggcttagtctatccacaggttcgtataaaaaatctcatttttggtcatcaaattaaacagtaaatttatattaattaat  919300                                                                         <---------MYB46(3)                                                                         <------MYB46(1)                                                                       <---------WOX13(1)                                                                      <------------CBF                                                                     --------->ATHB12       --------->ICU4                                       --------->LBD16      <---------TOE2(3)                                    --------->ANAC46      <---------TOE1(3)                                    --------->HSFB2a(2)<---------HSFB2a(2) ----->YAB1                                          <------------CBF-------->HAHB4 ------ICU4                                         ------>MYB83    <---------YAB1 -->WOX13(1)                                        ------>MYB46(1) --------->ICU4 ->AHL20(2)          --------->GLK1(2)            <---------MYB59   <---------ATHB12--------->RVE1(1) -----ATHB12  <----------ID1           <---------TOE2(3)   <---------HSFB2a(2)--------->HSFB2a(2)  -- --AHL20(2) ---------->DOF2           --------->MYB52(1)  <---------LBD16<------MYB83     <---------MYB52(1)   cataagttaatgtttaaagacaaattctatttcaaatttctaacgaatcagacctaattgtccggaataaatgattggttctgaaaatatcagttgggaa  919400                                                                                 <---------MYB52(2)                                                                                --------->ANAC46                                                                        --------->O2                                                                        --------->TGA1a                                                                        =============================bZIP_DOF                                                                     <---------LBD16                                            ----------->HVH21    --------->ZAT2 --------->ANAC58                                          --------->ANAC46       <---------HSFC1(2)                                         ------>NtERF2           --------->HSFC1(2)--------->MYB52(1)                                        --------->ANAC46         --------->HSFB2a(1)                                        --------->REM1(1)        <---------HSFB2a(1)                                        <---------ALFIN1         --------->At4g35610          ------------>CBF          <---------STY1(2)            <---------At4g35610       --------->DAG2       --------->LBD16 --------->LBD16  --------->ANAC58    <------ZmHOX2a(1)   --------->ANAC58     <---------LBD16   ----------->GT1  --------->ANAC58 <-----------RAV1(2)  <---------AtLEC2 ------->AHL20(2)    <---------LBD16--------->STY1(2)<-----------HVH21 --------->LBD16    ---------->DOF2   attaaaacccggttcaatttgaaaccggaaacaagactagctacgcctcacacagagtcacaggagaagctcccgcgtctgcaaggaacggataaagtct  919500                                                                          --------->ZAT6                                                                       <---------ZAT14                                                                       --------->ZAT14                                                                    ------->TEIL                                                                  ------->GAMYB                                                                  <---------ZAT18                                             <---------ARR11(3)  --------->ANAC58                  --                                             --------->ARR11(3)  --------->ANAC58                  <-                                       >>>>>>>>>TBF1           ---------->DOF2                   <---  <----------DOF2               ---------->DOF2             --------->ANAC46              --------->GLK1(2)   ctctctttctcactctctctctctctctctctctcaaagaagaagaagatgttgacgagtcccagtaacgcacttcacagtagtactccacaattctggc  919600                                                                      --------->ALFIN1                                                                     <------NtERF2                                                                   <---------DEAR3(1)                                                                  --------->ATERF1(1)                                                                  <------NtERF2                               <---------HSFB2a(1)                <---------LBD16                               --------->HSFB2a(1)              <---------DEAR3(1)                           --------->LBD16                      <---------RAP2.3(2)                          --------->ANAC46                      --------->DEAR3(1)                          <---------HSFB2a(2)               --------->ZAT2                          --------->HSFB2a(2)               <---------ZAT2 <------ZmHOX2a(1)                          --------->LBD16                   --------->At4g35610                         --------->HSFB2a(2)                <---------At4g35610                         <---------LBD16                   ----------->RAV1(1)                      <---------ARR14(2)                --------->ANAC46  ----------->GT1                    <---------ANAC58                    --------->ANAC58 ----------->GT1       <------NtERF2<---------ANAC58                    --------->ANAC58<------ZmHOX2a(1)      --------->LBD16<---------SPL7  <---------TOE1(2) --------->SPL7--------->ATERF1(1)     --------->DEAR3(1)  <---------HSFB2a(2)         <---------SPL7<---------ANAC46    <---------LBD16----------------->AGL1         --------->LBD16<---------RAP2.3(1) ------->O2 --------->ANAC58 <---------GLK1(2)    ------>NtERF2<---------At4g35610 --------O2 --------->ANAC58 --------->ARR14(2)  <---------DEAR3(1)--------->ALFIN1 ------ALFIN1  <----------DOF2---------->TaMYB80<---------LBD16--------->At4g35610   cacttcgccggagcaagctttgccgttcccggaatttccctcgttttcactccggcgaacgcagcagcggcggaggaggaaaattgtgctcgctctctct  919700                 --------->At5g28300                --------->LBD16                ----------->GT1               --------->ATERF1(2)               <---------ATERF1(2)              --------->RAP2.3(1)              <------NtERF2              --------->ATERF1(1)             <---------RRTF1(1)             <---------ERF1             <---------ATERF1(1)             ------>NtERF2             <---------RAP2.3(1)            <---------ANAC46            <---------RRTF1(2)            <---------RAP2.3(2)                                             <---------RAP2.3(1)            --------->TCP20                                                 ------>NtERF2            <---------PCF2                                         ------>NtERF2            --------->TCP16(1)                                     <---------ATERF1(1)            <---------DEAR3(1)                                  <---------At4g35610            <---------RAP2.3(3)                                 --------->At4g35610  <---------GLK1(1)           --------->RAP2.3(1)                               ------>NtERF2 <---------At1g77200           --------->ATERF1(1)                              --------->O2   <---------DEAR3(1)      --         --------->ALFIN1                                   ----------->HVH21<------NtERF2   <-------    --------->LBD16                                         <---------O2 <-----------HVH21  <--------   <---------HSFB2a(2)                                   --------->TOE1(2)<---------MYB52(1)<--------   --------->HSFB2a(2)            --------->GLK1(1)     --------->DEAR3(2)--------->ATERF1(1)<-------   --------->ANAC46         <-----------HVH21      <---------YAB1 --------->WRKY12<---------MYB46(3)  <---------LBD16<---------MYB52(1)        --------->MYB59  --------->DEAR3(1)<---------DEAR3(1)  <--   tctctccggaagtggcgccggtaaattcagtgtcagagctctagttaggcctgatgataccgacgacgctgactccgtcggcgatgggtctctggctttt  919800      <-------MYC3      ------->MYC3     --------->O2  --------->MYB46(3)                                            <----------DOF2 ---->ZmHOX2a(1)                                          --------->ZAT14 --DAG2                                                 --------------->AtSPL8<---------ANAC58 -ANAC58                                                --------------->AtSPL3<---------ANAC58 -ANAC58                                            ---------->DOF2          <---------MYB46(3) ---DOF2                                       --------------->AGL15     --------->ATHB12 -------MYB59 <<<<<<<<<WRKY18         ----------->GT1--------->DAG2<---------YAB1   cctaaccacgtttctgtcaaaattccattcggaaatagagaggtaatttcttcaaaaagctgtactcttttgatttcattggttgcaagtttgaattcgg  919900           --------->ARR14(2)           <---------ARR14(2)          <------ZmHOX2a(1)         <------MYB83         <------MYB46(1) --------->At4g35610       <--------P        <---------At4g35610    --------->ZAT18     <------MYB46(1)  <---------MYB52(1)      --------->ZAT2                                       <-     <------MYB83 --------->ARR11(3)       ---------->DOF2                                    <------   <---------WOX13(1)<----------DOF2    --------->ANAC58          --------->ALFIN1           <------- --------->ATHB12 <---------ARR11(3)    --------->ANAC58       ------->TEIL             <-----------GT1   agttgattggtaggatttgagacctttagctccatagtagagaagcaaagctcgctgtttagatgaatgtgttgaacattgttcaaagtttttcatcttt  920000  Previous    Next  AGI:  At3g03710.1    Description:  RIF10 (RESISTANT TO INHIBITION WITH FSM 10); 3'-5'-exoribonuclease/ RNA binding / nucleic acid binding. similar to polyribonucleotide nucleotidyltransferase, putative [Arabidopsis thaliana] (TAIR:AT5G14580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67489.1); similar to polynucleotide phosphorylase [Pisum sativum] (GB:AAC50039.1); similar to polyribonucleotide phophorylase (GB:AAC49669.1); contains InterPro domain Polyribonucleotide nucleotidyltransferase; (InterPro:IPR012162); contains InterPro domain K Homology; (InterPro:IPR004087); contains InterPro domain Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacter Range:  from: 919549    to: 925345    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version