Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                <------                                                                                             <-------                 --------->LBD16                                                             --------                --------->ANAC58                                                          --------->YAB1                --------->ANAC58                                                         <---------YAB1                --------->ANAC46       --------->ARR11(3)                           ----------->GT1               <---------LBD16         <---------ARR11(3)                       <---------ARR11(3)             --------->ARR14(2)       --------->GLK1(1)                         --------->ARR11(3)             <---------ARR14(2)  ------>MYB46(1)                       <---------ANAC58  --------->ICU4         <---------YAB1          ------>MYB83                          <---------ANAC58--------->YAB1       --------->YAB1       <-----------GT1                 --------->ZAT6      --------->AHL20(1)    --------->WOX13(1)--------->ICU4--------->YAB1        <-----------GT1       <---------AHL20(1)<--   tctcatctatcatcatatacggaaatgaataaaccaaatgatatctagacatcaagtttataactctatatttgcttaacaatattttgttataattaaa  916000                                                     <---------AHL20(2)                                                     <---------YAB1                                                    --------->AHL20(1)                <------MYB46(1)                     <---------WOX13(1)             --------->AHL20(2)                <------MYB83    <---------ARR11(3) --------->YAB1               <---------AHL20(2)          --------->ICU4    --------->ARR11(3) --------->ATHB12             <---------AHL20(1)       <---------DEAR3(1) --------->TOE2(3) --------->ATHB12              <---------AHL20(2)       <---------DEAR3(1) ---AHL20(2)--------->AGP1                       --------->AHL20(2)<----------DOF2   --------->MYB46(2) --AHL20(2)<---------At4g35610              ------>ZmHOX2a(2)   <---------ARR11(3)   --------->MYB59- ->AHL20(2)--------->At4g35610        <----------DOF2--------->AHL20(2)  --------->SPL7       ------- ---------GT1<------ZmHOX2a(2)  --------->ZAT14  --------->YAB1 --------->ARR11(3)   --------->MYB111(1)   taacattatcttcagatcaactcattgattactctaaactctttgatctaataatataatttgaaatacctttgctacggcgatgagtaggtagccaaga  916100                                           <---------AHL20(2)                                           --------->AHL20(2)                                          <---------AHL20(2)           --------->ATHB51                                          --------->AHL20(2)        --------->TOE2(3)                                          --------->AHL20(1)     <-----------GT1    ------>MYB83                          <---------AHL20(1)  <---------ARR14(2)    -------->P                      ------>MYB46(1)           --------->ARR14(2)    ------>MYB46(1)                 ------>MYB83           --------->ANAC55(2)  <---------MYB59                   --------->MYB52(1)     <---------ANAC55(2)               ------>MYB83 ------>TEIL                      <---------MYB59   ----------->GT1 <---------------AGL15    ------>MYB46(1) -->ICU4  ------->TEIL         <-----------GT1 <---------ICU4 ------->TEIL      <---------ANAC46   tgaacctacatgtatcaaatactaccaaaatataaacctaacaatttaataagtatgtaaaacgtattttccataatttgtggagtctgaagaccaaatg  916200                 --------->ATHB12            <---------YAB1             <------ZmHOX2a(1)            <---------AHL20(2)      <-----------RAV1(2)           --------->AHL20(2)      ===================HOX2a_HOX2a                           ---------         <---------YAB1            <------ZmHOX2a(2)                                   <------MYB83         --------->ICU4           --------->ARR14(2)           --------->DAG2          <------MYB46(1)       --------->YAB1             <---------ARR14(2)    <---------TOE2(3)             <---------AtMYB61      <---------YAB1         <---------LBD16        <----------DOF2                  <--------P   <--     <-----------GT1      <---------ANAC46     <------ZmHOX2a(1)----------->GT1    <---------REM1(1) <---------ARR11(3)       <---------ANAC58   <---------TOE2(3)---------->DOF2      --------->ALFIN1 --------->ARR11(3)       <---------ANAC58 --------->ICU4----------->GT1         <---------ANAC46----   aaagatttatcatttttattgattagtttcttgggggatcaggaaatgaggaaactttgatgtaaaaagtcaaaacaacaatgaagtgtaggtttagttt  916300                                                              --------->AHL20(2)                                        <---------ICU4        <---------AHL20(2)                                        <---------AHL20(2)<---------AHL20(2)                           --------->DAG2                 --------->AHL20(2) -->GT1                   ---------->DOF2              ------->TEIL           --------->ATHB12 -------TOE2(3)   --------->MYB52(1)   --------->AHL20(2)--------->AHL20(2)  <---------YAB1   ------- ------>DOF2 ---------->DOF2         --------->YAB1  <-------TEIL  --------->TOE2(3)    <------------CBF   aaagatggagtaagtcaaagtaatggaataaagtatgtataataaatattcgaaatgcatttaataaaacatcaacaaaatgatagaacttattgacaaa  916400                                          *TSS                                         --------->LBD16                                         <------------CBF                              ------>ZmHOX2a(1)                                        --------->ATHB12                         <---------ALFIN1                   ----------->TBP     <---------YAB1                            --------->HSFB2a(1)                   <---------AHL20(2)  --------->ICU4             --------->TOE1(2)  ----------->RAV1(2)                 --------->AHL20(2) --------->ICU4        <---------ANAC46       <---------HSFB2a(1)       ----------->TBP       ------->GAMYB<---------WOX13(1)   <---------ARR14(2)--------->ZAT6      ------->TEIL --------->AHL20(2)--------->YAB1   <-------GAMYB         --------->ANAC58  ------->TEIL   ----------->TBP  --------->YAB1     ----------->GT1        --------->ANAC58       -- --->DOF2   <-------TEIL  ----------->RAV1(1)        <---------MYB46(3)     --------->ANAC46       --   gatgtatgtatatatacatatatatatacaacagaagaatgatgattgatgaagatggttaagtggaacttgggattcaaggaacactcctggcaaatac  916500                           ------->GAMYB                        --------->MYB52(1)                     --------->ANAC46                     --------->ANAC58                     --------->ANAC58                   ---------->DOF2                <-------TEIL                   --------->MYB46(3)       <---------ZAT14                  ------>MYB46(1)          --------->ALFIN1             --------->REM1(1)           <---------ANAC58        --------->YAB1             --------->ANAC46--------->WRKY18(1)<---------ARR14(2)                     <<<<<<<<<TBF1  ------->TEIL    -------->P<-----------HVH21   --------->ARR14(2)        ------>ZmHOX2a(1) ------->ANAC58   ------>MYB83           <---------ANAC58        <---------ICU4    ------>ZmHOX2a(1) ------->ANAC58 --------->AtMYB61        <---------ANAC46     --------->YAB1    ------>ZmHOX2a(1) ---   aacgcatctatgcctacaccaacaagcaacggtcatgcctctcgcgtgcagattcaagaaccaagaataatgtctcctcttcctccttcttcttctccaa  916600                                                        ------->TEIL                                                        --------->ARR14(2)                                                        <---------ARR14(2)                                                        <-----------ARR10                                                        <---------ARR11(3)                                                  ------>ZmHOX2a(2)                         <--------                                         <---------ALFIN1                                   <--------                                     ====================HOX2a_HOX2a                     <-----------GT1        <---------ARR11(3)      --------->GLK1(2)<---------GLK1(1)                   <----------DOF2      <---------TOE2(3)        --------->YAB1   <---------ARR11(3)                  <---------ANAC58 ---->GAMYB        <----------DOF2   <------ZmHOX2a(1) <---------CCA1(2)            <---------ANAC58   tcgccttcaaggtatttctctcttttgaatcaagaatcaggaaacaccttgatctctgtatcttctctctctctgggttctgttttgctttctactttat  916700                                                                                ---------->ID1                      --------->WRKY45                                     <----------DOF2                      --------->WRKY12                               <---------GLK1(2)                      --------->WRKY38(1)                           <---------ZAT2 -DAG2        ------>ZmHOX2a(1)         <---------ANAC58            --------->ZAT2 --DOF2     ------>ZmHOX2a(2)           <---------ANAC58            <---------At4g35610   gctatctgttttgatcctctctcgttgacttccatcactatttcttgactcaagaacaaaaccaagacccagcttctcttttgtctcttcttgttttctt  916800               <---------ANAC58               <---------ANAC58                                                                    <-               <---------AtLEC2                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <---------ANAC58                                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <---------ANAC58  --------->ARR14(2)     <-----------GT1          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <-----------GT1--------->MYB52(1)   <----------DOF2                <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <---------DAG2  --------->YAB1        --------->ZAT2                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <----------DOF2<-------TEIL      <-----------GT1                     <---------AHL20(2)    <----   catggtgctttttacttgcatgttcataacgaattcacattaaccagctttgaataacctgttgatgagacaccatttttttttttttttttttttttgc  916900  Previous    Next  AGI:  At3g03702.1    Description:  other RNA Range:  from: 916363    to: 918841    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g03700.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G04440.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67493.1); contains InterPro domain Protein of unknown function DUF580 (InterPro:IPR007603) Range:  from: 916442    to: 918497    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version