Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       --------->ALFIN1                                                                                  <---------AtMYB61                                                                                 <------NtERF2                                                                               <---------ANAC46                                                                               <---------DEAR3(1)                                                                               --------->ALFIN1                                                                              ------>NtERF2                                                                              <---------At4g35610                                                                              <------NtERF2                                                                             <---------RAP2.3(1)                                                                             <---------RRTF1(1)                                          <-----------RAV1(2)               <---------RRTF1(2)               <---------MYB52(1)    <---------ANAC58                       <---------DEAR3(1)              <-------GAMYB          <---------ANAC58                       <---------RAP2.3(2)         <---------ZAT2         <---------DEAR3(2)                         <---------LBD16         --------->At4g35610    <---------MYB46(3)                      <---------At4g35610         --------->ZAT2         <------MYB83                    <---------YAB1--------->ATERF1(1)         <---------At4g35610    <------MYB46(1)              --------->GLK1(2)<---------LBD16    <-------TEIL<---------MYB46(3)  --------->MYB52(2)      <---------GLK1(2)------>NtERF2<------ZmHOX2a(1)  --------->ARR14(2)        <---------MYB46(3)        --------->At4g35610 <-----------RAV1(1)    ----  <---------ARR14(2)        <-----------RAV1(1)    <---------At4g35610  --------->At4g35610  <------ZmHOX2a(1)  <---------GLK1(2)         ==========================RAV ----------->ARR10--------->At4g35610  -----   ttcggattcgtagctccgttgttgttgttgttgttggttccttgccaggtgtaatctgatgagattctgtttatagctgcggcggaggtagaggaggagt  851200           --------->ALFIN1          <------NtERF2          <-------GAMYB          --------->ATERF1(1)         <---------ATERF1(1)         <---------DEAR3(2)         <---------MYB46(3)         <---------DEAR4(2)        --------->ALFIN1        <---------DREB2C(2)        <---------DEAR3(1)       <------NtERF2       <---------ABI4(1)      <---------RRTF1(1)      <---------ERF1      <---------RAP2.3(1)      ------>NtERF2     --------->O2     <---------O2     <---------DEAR3(1)                      <---------bZIP60(2)     <---------RAP2.3(2)                  ----------->HVH21    --------->ATERF1(1)                   ----------->TGA1    <------NtERF2                       --------->At4g35610         --------->ARR14(2)   <---------ATERF1(1)            --------->ZAT14                   <---------ARR14(2)   ------>NtERF2  <---------ARR14(2)    --------->ZAT2             --------->HSFB2a(1)  ----------->HVH21               <---------ZAT14              <---------ANAC46  --------->ETT(2)--------->ARR14(2)    <---------At4g35610--------->ATERF1(1)                     --  <---------DEAR3(1)              --------->ZAT18       --------->ZAT18  <---------At4g35610       <- ----->ALFIN1<------NtERF2       --------->ALFIN1<------ZmHOX2a(1) <------ZmHOX2a(1)         <------ZmHOX2a(1) ---->ALFIN1------>NtERF2<---------At4g35610 <---------ANAC46 <---------STY1(2)         <------ZmHOX2a(1)   tgtggcgacggcggtggcagtatttggagatgagagtgtagtagctgacgaggatgaaggcgctagcgaggattccgatgagagcgatgaggagaggaga  851300                                                              --------->TGA2(1)                                                              <---------bZIP60(1)                                                              --------->ANAC58                                                              <---------ANAC58                                                              <---------TGA2(1)                                                              --------->bZIP60(1)                                                              <---------ANAC58                                                              --------->ANAC58                                                              ----------->GT1                                                              --------->ANAC55(2)                                                            <---------TGA2(2)                                                           ----------->TGA1                                                         <---------At4g35610             <---------HSFB2a(1)                  <------ZmHOX2a(1)          <------ZmHOX2a(1)                     --------->ALFIN1       <------ZmHOX2a(1)                       <------ZmHOX2a(1)   --------->ZAT6    --------->At4g35610           --------->CCA1(2)      --------->At4g35610 ------->GLK1(1)            <------NtERF2    --------->ALFIN1 <---------ANAC55(2) --------GLK1(1)          <---------DEAR3(1)<------ZmHOX2a(1)----------->STF1 --------->ZAT18   gaaatcagaggaggaagagtcgtcttcgtcgtcgagatagaaggaaggaggaggagggaagatgacgtaacaccattgagggcaatagacactgcatact  851400                                 --------->ANAC58                                 --------->ANAC58                                 --------->ANAC46                               <-----------GT1             ------->TEIL                              <---------SPL7         ------>ZmHOX2a(1)                             <---------REM1(1)     <---------ANAC58      <-----------RAV1(1)                            --------------->AtSPL8 <---------ANAC46      <---------MYB46(3)                          <-----------RAV1(1)      <---------ANAC58     <---------WOX13(1)                         <---------TOE2(2)      --------->GLK1(1)      >>>>>>>>>ARR2                         <---------TOE1(2)      <---------GLK1(1)    <---------AHL20(2)                    ------->TEIL------->TEIL <---------TOE2(3)   --------->ATHB51       <XXXXXXXXXXXXXXXXXXXXMIR416           <---------TOE1(3)   --------->ATHB12     --------->CCA1(2)   ccttgagaacagtctctgtatgaatcgtatgttgtaccccatggattagggtttcctgttgaacccattatttgattgttggagaaagatagagagagag  851500                      ========================bZIP_DOF                      <---------TGA1a                                                              <-                      --------->ANAC55(2)                                                         <--                      <---------ANAC55(2)                                                   <--------                      <---------O2       <----------DOF2       <--------P     <---------AHL20(2)  ---                      ==========================================bZIP_DOF   <---------AHL20(2)    *TSS --------->ANAC58     --------->O2 <---------DAG2             <---------MYB52(1)         <---------AHL20(2) --------->ANAC58 <-----------HVH21<----------DOF2   <----------DOF2       --------->AHL20(2) -------   agcaaggaagaagatggaggtgtcaagtgtctctctcctttttctttgggctctgcttttgtctggtaagtgtctatttttttatttcgagttaattggt  851600                       --------->AHL20(1)                       <---------AHL20(1)       <------ZmHOX2a(1)                                     --------->YAB1 <-----------TBP <---------YAB1       --------->AHL20(2)      <---------ANAC58    <---------WOX13(1) -------HAHB4     --------->AHL20(2)          <---------ANAC58   <------------CBF -------YAB1  --------->ICU4             <----------DOF2    --------->ZAT6<---------YAB1 -WOX13(1) --------->ICU4           ---------->DOF2   ----------->GT1   --------->YAB1 <---------KAN4(1) ------>ICU4  <---------YAB1      <---------YAB1      <---------ZAT6  <---------WOX13(1)       <----- ---->GT1 --------->ARR11(3)   <-------TEIL   <---------AtLEC2 <---------YAB1<---------YAB1    <-----   attattagaggagataatgaataaatatatatgttcatgaaagcttttgcatgatggtgttaatactaattgaatgatgtttatagtgaatgttctactt  851700                                                                                                    -                                                                                                    <                                                                                                   <-                             --------->ALFIN1                                                      --                             <---------REM1(1)      <---------YAB1                              -----       <---------YAB1   ---------->DOF2            --------->AHL20(2) <----------DOF2      <---------TOE2(3) ----DAG2          <---------YAB1        <---------DAG2         <----------DOF2     <---------AHL20(2) -----DOF2    --------->HSFB2a(2)        <----------DOF2  <----------DOF2 <---------YAB1  ---------->DOF2   tatcaaatttttatttctagtatgaataaaggtgtagaatttgctttattcatttttattctttagctttctctttatgcttccattttttttaaagata  851800                <---------AHL20(2)                                      --------->TOE2(2)         ----------->GT1                                                --------->TOE1(2)      --------->TOE2(3)                                           --------->ANAC58 -------->AHL20(2)             <---------AHL20(2)                 ----------->GT1 ---------AHL20(2)        <-------TEIL                            --------->ANAC58 --------AHL20(2)       <---------GLK1(1)                 --------->CCA1(2) ------->AHL20(2)<---------AHL20(2)            <---------AHL20(2) --------->ANAC55(2) ---->AHL20(2)  --------->AHL20(2)             --------->AHL20(2) <---------ANAC55(2)   <---------ZAT6   aattaatacattagtaaaataaatggagttcattttttttttttttgattttattttgagaaatgagaacgtaacataagaagtgttttagtgttgacga  851900                                                                                           --------->ALFIN1                                                       <---------ZAT6                     ------->MYC2                                                       --------->ALFIN1                   <-------MYC2                                                     <---------ANAC46                     ------->MYC4                                                   <---------ZAT14                        <-------MYC4                                                <------MYB46(1)                           <-------PIF5                                                <---------MYB46(3)                        ------->PIF5                                                <------MYB83                              ------->MYC3                                               --------->MYB46(2)                         <-------MYC3                                               <---------MYB46(3)                        --------->TGA1a                                               --------->MYB55(2)                        ============                                               <---------AtMYB61                         <---------TGA1a                                               --------->MYB111(2)                       --------->O2                                               --------->MYB111(1)                       <---------O2                                            --------->ATHB12                             --------->PIF3(3)                                            <---------MYB46(3)                           <---------ANAC46                                       <---------AHL20(2)                                <---------PIF3(3)                                       --------->AHL20(2)                                <<<<<<<<<<HY5                              --------->ANAC58 <---------DEAR3(1)                       <<<<<<<<<<AtbZIP1                              --------->ANAC46<---------MYB55(1)                       <---------ALFIN1  ---------->DOF2             --------->ANAC58<--------P                              ---------------   aataaaaagagagagagggtttagtctatttcaaggcataaaaaaatggttggtgaagtgttgacgaaggtggaatactataacatgggccacgtggatg  852000                         <---------TOE2(3)                 ------->TEIL                 --------->ARR14(2)                            <---------MYB59                 <---------ARR14(2)                       ------>MYB83                 <---------ARR11(1)                       ------>MYB46(1)           <---------YAB1                <---------CCA1(2)                      --------->DEAR3(2)          <-----------GT1          <---------HSFB2a(2)                         <---------At5g28300       --------->AHL20(1)          --------->HSFB2a(2)              <---------------AtSPL8-------->P     <---------AHL20(1)    <-----------GT1     ---------->DOF2    --------------->AtSPL8------>MYB83   --------->ARR11(3) ==================================bZIP_DOF--------------->AtSPL3------>MYB46(1)<---------ARR11(3)  - ->PIF3(2)------>ZmHOX2a(1)    <---------AtMYB61     <-----------GT1      >>>>>>>>>TBF1             <   acaaatttactcctcgacgtatctattaaagttgtggtcagaaatacagtacaatttaccgactacctacatggaagaagaatattttcatttcatttca  852100  Previous    Next  AGI:  At3g03550.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to RING-H2 finger protein ATL3A (ATL3A) [Arabidopsis Thaliana] (GB:Q9SRQ8;GB:Q9SS59); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G17600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63399.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 850115    to: 851597    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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