Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        <-----------GT1                                                                                 <---------AHL20(2)                                                                                 --------->AHL20(2)                                                 --------->AHL20(1)              <---------ICU4                                                 <---------AHL20(2)              <--------ATHB1                         <---------AHL20(2) --------->AHL20(2)                   --------->ATHB51                   --------->YAB1      <---------MYB52(1)                       --------->ICU4        --------->AHL20(2)       <----------DOF2 --------->AHL20(2)           --------->YAB1        <---------AHL20(1)       <---------DAG2 <---------AHL20(2)          <---------YAB1        <---------AHL20(2)   <-----------GT1<---------AHL20(2)           --------->AHL20(2)   <---------MYB52(1)  <----------DOF2--------->TOE2(3)                  <---------AHL20(2) ----------->GT1--------->YAB1<-----------GT1   --------->AHL20(2)   <---------YAB1  <-----------GT1   atttcgttattttattttttataatcttttatttccttttcgttaattaaaaaaattagtaatagtagaatatgatttattaataatttacccagtcatc  835600                                                  --------->AHL20(1)                                                  --------->AHL20(2)                                                  <---------AHL20(1)                                                  <---------AHL20(2)                                              <---------AHL20(2)                                             --------->AHL20(1)             <-----------GT1                                             <---------AHL20(1)        <---------YAB1                                             --------->AHL20(2)        <---------AHL20(2)                                             <---------ARR11(3)      --------->YAB1                                             --------->ARR11(3)  --------->AHL20(2)                                            --------->AHL20(2)   <---------AHL20(2)                                        <---------YAB1        <---------ARR11(3)      <---------CCA1(2)                            ------>ZmHOX2a(1)<---------AHL20(2) --------->AHL20(2)  --------->YAB1               --------->DAG2     --------->AHL20(2)          --------->ARR11(3)  <-----------HVH21  <---------YAB1----------->GT1   <---------AHL20(2)        <---------TOE2(3)<-----------GT1 --------   ttgtattattcagtcaaaaggtttttagtcctgtatttttttataaatatattttattgaataagatttatttataatttacccagtcatatcgctaaag  835700                                                    <--------ATHB1                                                    --------->ATHB51                                                    --------->YAB1                                                    <---------ICU4                                                   --------->ICU4                                                   <---------ATHB12               <----------DOF2                                           --------->YAB1 ------>ZmHOX2a(1)<---------ALFIN1                                          <---------YAB1 --------->TOE2(3)--------->MYB46(3)              <-----------GT1            <---------ARR11(3)             --------->ARR14(2) <---------ANAC58             <---------GLK1(1)    <---------ATHB51   --------->ANAC58 <---------ANAC58      <----------DOF2   --------->ARR11(3) <---------CCA1(2)<---------ALFIN1 -->DOF2 <---------RVE1(1)    --------->GLK1(1)  --------->YAB1       --------->ANAC58            <--   gaagcgtttcgatattttacattttctttgagaaatcccacaatatcataacaataattcctaaatctcagcaagaaccacactctttcttctaacgtct  835800                                                                                          --------->LBD16                            <---------YAB1                                                <----------               ---------->ID1                                 ---------->ID1        --------->ARR14(2)        <----------DOF2  <----------DOF2                <----------DOF2             <---------ARR14(2)   <-----------GT1    <-----------GT1           <---------TOE2(3)                --------->HSFB2a(2)-  <-----------GT1 <----------DOF2<---------AHL20(2)     <---------DAG2           <---------HSFB2a(2)- --------DOF2 <-----------GT1   --------->AHL20(2)<------ZmHOX2a(1)           <--------P --------->ANAC46   ctttttatctcttttttttccttttaacttttgatttaatcttcagtattgaggaatgctttttgtcttcttgttctctggttgcagaaccccgtcaaac  835900           <---------ANAC58           <---------ANAC58    ------->GAMYB <---------HSFC1(2)            --------->TOE2(3) --------->HSFC1(2)   --------->ANAC58 -HVH21    <---------ANAC46   --------->MYB46(3) -------->ANAC58      ----------->GT1                                                        <------- -------->ANAC58      --------->ANAC58   <---------ZAT6 ------------>CBF                    ---------   acaagcttctgttccttggacaacaagttacaaccacaaactagtgttcgcaaacatatacaatctattcattcagtagaaaggctagtacaaaatgtca  836000                                                                                        --------->YAB1                                                                                        --------->TOE2(3)                                                                                       <---------ZAT6                                                                                       ----------->GT1                                                                                     ------>MYB83   <---------GLK1(1)                                 <---------ZAT6                  ------>MYB46(1)  --------->ARR11(3)                               <---------ANAC55(1)             <---------MYB59  <---------ARR11(3)                               <---------ANAC58             <-----------GT1 ----HVH21                                         <---------ANAC58      --------->ANAC55(2)        < -->GT1                  ----------->GT1      *TSS <---------ANAC46      <---------ANAC55(2)        -   aatagatattcgaagaacccatcgaaccagtaaaactcttaatctcttccatttcgtgttaattttctgtgaaatatgtattaaacctaatgttaatcgt  836100                           ----------------->AGL1                      ------>ZmHOX2a(2)                     <------ZmHOX2a(2)                    <-----------ARR10                    <---------ARR14(2)                    --------->ARR14(3)                    --------->ARR14(2)                    <---------ARR14(3)                    <---------ARR11(3)    <---------ANAC58                            <---------At4g35610                    --------->AGP1   ---------->DOF2                              --------->ARR14(2)         ---------->DOF2 <---------WRKY18(1) <-------TEIL                   --------->ARR14(2) ---------HSFB2a(2) --------->ARR11(3)    <---------ANAC58            <----------DOF2 --------->At4g35610 -------->HSFB2a(2) <---------AGP1 ----------->HVH21         ---------->DOF2<---------ARR14(2)  <----   ttgtagaaattcaaagtcacaagatcttgacctctatgtgaaaggcgttcattttcatcttaacaaagtaagcttttgaatccgatttcgctgagattta  836200                                                                                          <---------bZIP60(1)                                                                                          --------->bZIP60(1)                                                                                          <---------TGA2(1)                                                                                          --------->TGA2(1)                                                     <------MYB46(1)          ------>ZmHOX2a(2)                                                     <---------MYB46(3)       <---------DEAR3(1)                                                     <------MYB83            <------ZmHOX2a(2)                                                 <---------MYB46(3)         <---------ARR14(2)                                              <------MYB46(1)              <---------GLK1(1)                                              <------MYB83 ==========================HOX2a_HOX2a                                             <---------AtMYB61      <---------At4g35610  ----------->STF1       <---------TOE2(3)                  <-----------RAV1(1)   <----------DOF2    ---------->DOF2 <---------DAG2           <---------TOE1(2) <--------P     =========================HOX2a_HOX2a <----------DOF2 <---------YAB1         <------MYB46(1)    <------ZmHOX2a(1)--------->ARR14(2) -------GT1    <---------At4g35610      <------MYB83--------->MYB59 --------->At4g35610----------->TGA1   tctctttttgtggtttcttctgatttcgagggtttcgatatttggtgttggtgtttggttaggagactttagctaagagatcggcgaaagtgacgacatt  836300                                   --------->At4g35610                  --------->O2          -------                                   <---------YAB1            <---------ARR11(3)           <---------TOE2(3)                                 --------->YAB1              <---------ARR14(2)   --------->GLK1(2)                          <-------GAMYB                      --------->ARR11(3)  <---------GLK1(2)           --------->ANAC58     <------ZmHOX2a(2)            --------->ARR14(2)----------->ARR10           --------->ANAC58  <---------MYB46(3)        ------->GAMYB    <---------O2      <---------TOE1(3)    ----------->GT1      <---------ANAC46            -------->P    <---------ALFIN1    <---------MYB52(1)   actcgagagtaacaagctccatgaactgcgttggatcatcagagacatggacatcaacccaagtatcttccacctcgtgactagattctgttatggatac  836400                                                                                                    <                     <---------ARR11(3)                                                             <              ----------->HVH21                                      --------->YAB1                 -            <---------At4g35610                                     <---------YAB1             ------            --------->At4g35610                         --------->CCA1(2)                     -------            <---------ZAT2                   <---------ICU4        --------->ARR11(3)         -------            --------->ZAT2                 <---------ANAC58        <---------ARR11(3)         -------       --------->YAB1--------->ARR11(3)    <---------ANAC58       --------->YAB1--------->MYB46(3) <- -->CCA1(2) ----------->RAV1(2)            <---------ANAC46      --------->ICU4XXXXXXXXXXXXXXXXXXXX>MIR780.1   aaaatcgaattatcagctgacaatatcgtctctgtgttatgcattgcttattacctagagatgagcgatgatcatagctctaacaacttgttgaacaagg  836500  Previous    Next  AGI:  At3g03510.1    Description:  phototropic-responsive NPH3 family protein. similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT5G17580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24302.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain Kelch related (InterPro:IPR013089) Range:  from: 836046    to: 837714    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version