Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          --------->TOE1(2)                                                                                        --------->TOE2(2)                  ----------->RAV1(2)                       ---------->DOF2        <---------AHL20(2)                  --------->At4g35610                      --------->YAB1      --------->CCA1(2)                  <---------At4g35610                ----------->RAV1(1)      --------->ARR11(3)                <-----------GT1                      --------->RAP2.6(2)      <---------ARR11(3)    <           <---------GLK1(2)  --------->YAB1      --------->RAP2.6(2)   --------->ZAT14 --------->TOE2(3)         --------->ANAC58    <---------ATHB12   --------->At4g35610     <---------ZAT14--------->YAB1         --------->ANAC58  --------->WOX13(1)   <---------At4g35610     <---------REM1(2)------>ZmHOX2a(1)   aactgtttagcaagaatttcacctgaatccaatcataaacatgaagagtaagcagccacaataaaagttatctcttcacagatatataatcctaagaaaa  785800                                        ----------->RAV1(2)                                    --------->SPL7                                 --------->HSFB2a(2)                                 <-----------RAV1(2)              <---------AHL20(2)                            ----------->HVH21            <---------GLK1(1)                        ----------->RAV1(2)              --------->GLK1(1)               --------->ANAC46  <---------HSFB2a(2)  --------->ANAC58               --------->ICU4 -------TEIL  <---------LBD16   ------>ZmHOX2a(2)     --------->ANAC58          ----------->GT1   cattcgttaccaattccacggctagcccctgtgatccagacgacctgagcaaaaccaagaaatctgaattaatgctcagagattgaaataatcgaaaact  785900                                                               --------->ANAC58                                                               --------->ANAC58                                                               --------->ANAC46                                                             <---------ALFIN1                                                 <---------ANAC58                                                 ====================================================                                                 --------------->AGL15                                                 <---------ANAC46                                                 <---------ANAC58 <-----------HVH21                                  --------->WOX13(1) <---------AtLEC2  <-------MYC3            ------                            ------>ZmHOX2a(1)   <-----------------AGL1 ------->MYC3            <-----   --------->WOX13(1)    <-----------GT1    <---------ANAC58<------NtERF2                ----------->GT1 <---------ATHB12       <-----------GT1     <---------ANAC58----------->HVH21           <---------TOE2(3)   caaatcaatcccactaaattccattttttcctctatcaatccagtaccttgccttgtatggcctcacgcttcacatgcttcttcgaaatcaaggtaaaat  786000                <------ZmHOX2a(2)                ==============HOX2a_HOX2a               <---------ARR11(3)           ---------->DOF2        --------->ANAC58        --------->ANAC58      ---------->DOF2     --------->ANAC46  <----------DOF2 ======================HOX2a_HOX2a ------>ZmHOX2a(1)--------->WOX13(1) <---------------AGL15 ------>ZmHOX2a(1)                                   <---------YAB1 ================MADS_MADS                    <---------ICU4             <-----------GT1 --->ARR11(3)  --------->ARR11(3)      ----------->GT1        <-----------TGA1             <---------ARR14(2) ----ARR11(3)--------->ICU4       ---------->DOF2             <-----------HVH21<---------DEAR3(1)   -   ctcctacacaaagcaaagatcaatccttttatacataaaagaagttaaacattgcattagaaatcgtcagagttattaccatcggcgaatgcaaatttga  786100                                                                       --------->TOE1(2)                                                                       --------->TOE2(2)                                                                      --------->MYB46(3)                                                                      <---------MYB55(2)                                                                     -------->P                                                                 --------->ANAC58                                                                 --------->ANAC58                                                        --------->HSFB2a(2)                         --------->LBD16                <---------HSFB2a(2)                       ---               ---------->DOF2                          <---------LBD16------->GAMYB             ---- -------->At4g35610 --------->ZAT18        <---------ZAT6        --------->ANAC46            --------   agagcagaacgataagaagaagcgctccgagagagaagaagagtagagtcagcattttctcggattgaagcaaccagcgagagaccaagtcttcttaccc  786200                                                     --------->CCA1(2)                                                    --------->ARR11(3)                                                    <---------AHL20(2)                                                    <---------AHL20(1)                                                    --------->AHL20(1)                                                   <-----------TBP                                                 <---------AHL20(2)                                                 --------->AHL20(2)                                             <---------ICU4                                             -------->ATHB1                               --------->GLK1(2)                                            <---------AHL20(2)                            <----------                         <---------REM1(1)  --------->AHL20(2)               --------->TOE2(3)                     --------->AHL20(2)     <---------ATHB51             --------->AHL20(2)      <--- ------>ALFIN1  *TSS <---------AHL20(2)     --------->ICU4               <---------AHL20(2) --------- ----->LBD16--------->ETT(2)             --------->AHL20(2)             <---------ATHB12  <---------ARR11(3) >P     --------->ARR11(3)    <------ZmHOX2a(1)<---------YAB1       ------------>CBF      --------->ARR11(3)   gtgggcaaaatatgttgacagaaataaatgtaggagtagaacataaattattaatatatagggacctgtatgcaattaatcttatataccaaaatcttat  786300                           <-----------RAV1(1)                       <------------CBF                      --------->YAB1                      -------->ATHB1                     <---------ATHB12                                          ---------->DOF2                     <---------YAB1                                           <------ZmHOX2a(1) -ARR10            ============================HOX2a_HOX2a                <---------TOE2(1) --------GT1       ------>ZmHOX2a(1)    <------ZmHOX2a(2)                 <---------TOE1(1) >TOE2(3)  <------------CBF*TSS   <----------DOF2    <---------CCA1(2)  <------ZmHOX2a(1)   tacatccgaatgccattgttcctatcattgtgttgtctttcgatcaaaaaaccccaaatctctgtttgcagagaggacgaggaaagagagagagagagag  786400                                                                                                -----                                                                                               ------                                                                                               <-----                                                              --------->ZAT2              --------->MYB52(1)                                                              --------->At4g35610         --------->ARR14(2)                                                           <---------At4g35610         --------->ANAC46                                                        <------ZmHOX2a(1)              ------->GAMYB                                                      <---------TOE2(3)             --------->MYB52(1)                                                  <----------DOF2                 <---------MYB52(2)                                               --------->ANAC58                   <---------MYB59<---                                               --------->ANAC46                  --------->At4g35610                                               --------->ANAC58                  <---------At4g35610   agagagagagagagagagagagagagagagagagagagaacgactatggacgctataaggaagcagcttgatgtgctcatgggagctaaccgaaacggcg  786500                                                 <---------ANAC58                                               <-----------GT1                                             <----------DOF2                                         <---------ANAC58                                         <--       ----------->GT1              <---------ANAC58                                             ----       --------->At4g35610          --------->ALFIN1                                   <---------DREB2C(2)     <------ZmHOX2a(1)              <---------ANAC58                                   <---------DEAR3(1)  <-----------RAV1(2)             <---------bZIP60(2)                     ------>ZmHOX2a(2) <-------- <-------TEIL                     <---------ANAC46                       <------ZmHOX2a(2)  <-------- ->NtERF2             --------->TOE1(2)  <---------ANAC58               <---------ARR11(3) --------->ABI4(2) --->DEAR3(1)      --------->ARR14(2)    <---------ANAC46      ------>NtERF2         --------->MYB52(1) ----DEAR3(1)      <---------ARR14(2)   ---------->ID1         <---------ZAT18      ----------->HVH21 ---NtERF2    ----------->GT1  <---------MYB52(1)<---------ANAC58       --------->ARR11(3) <---------MYB46(3)   acgttcaggaggtgaatcgcaaatactacgaccgtgatgtgtgtcgtctttacttgtctggtctctgccctcacgatctcttccaattgacggtgcttac  786600      <---------AHL20(2)    <---------AHL20(2)                                                         <---------ARR14(2) --------DOF2                                          <-----------GT1 <----------DOF2 ----->TOE2(3)                                 --------->TOE1(3)    --------->GLK1(2) -ANAC58          <-----------GT1      --------->AHL20(2) <----------DOF2      --------->ARR14(2) --- -ANAC58<-----------GT1         <----------DOF2--------->TOE2(3)<---------At4g35610  <----------DOF2   ctttatattttttcagtttattacttagttgtctctttgaataaaaaaaccctaatttcacttttgagctaatcttttgtgtttctgctttagctcgaat  786700  Previous    Next  AGI:  At3g03330.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G03350.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68791.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 783339    to: 786216    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g03340.1    Description:  UNE6 (unfertilized embryo sac 6). similar to LUC7 N_terminus domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G17440.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22940.1); contains InterPro domain LUC7 related (InterPro:IPR004882) Range:  from: 786327    to: 790084    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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