Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        <--------P                                                     <-------GAMYB                                                     <---------ANAC58                                                     <---------ANAC58                                                    --------->MYB55(2)                                                    <---------MYB46(3)                                                <-----------RAV1(1)                                               ------>ZmHOX2a(2) >MYC3                                       <---------AGP1 -MYC3                        --------->At4g35610  <---------AtMYB61 -MYC2             <---------ZAT2            <---------ARR14(2) >MYC2             <---------At4g35610--------->ARR11(3)                         <------NtERF2 --ANAC58      ------>ZmHOX2a(1)      <---------ARR11(3)                       <---------DEAR3(1) --ANAC58     --------->TOE1(3)   ---------->DOF2 <---------MYB52(1)          <---------------------WRI1 --ANAC46     --------->TOE2(3) ------->GAMYB--------->ARR14(2)              <-----------HVH21   tgttaactaggtgtttccttaagctggtgatcaactgaaagctcttcgatctggtggttgccataaaactgtgtttcttcgtcggagattacaagagaga  729400                                  <---------------AGL15                                  --------------->AGL15                                 <---------ANAC58                           <---------ARR11(3)                           --------->ARR14(3)                           <---------ARR14(3)                                                     ---                           <---------GLK1(2)                                                     ----      <------ZmHOX2a(1)    --------->ARR11(3)                                                    ----  <-------TEIL  <-----------GT1  <---------ANAC58               <-----------GT1         <---------AHL20(2) --------->CCA1(2)   --------->ANAC46<----------DOF2   --------->YAB1  <---------MYB52(1)      ------   gagatacaggaaaatttgtttctactcaagattttgcttcttttagtcagtaatgtatgatgagtttaactccgtttaatgtgtgcttatatatatgcat  729500                                                                 -------->P                                                                --------->MYB55(1)                                                               <---------MYB55(2)                                                               <---------MYB46(2)                                                               <---------MYB111(1)                                                               --------->MYB46(3)                                                               <---------MYB111(2)                                                      <-------PIF5             --------->ARR14(2)                                                      ------->MYC4             <---------MYB52(1)                                                      ------->PIF5             <---------ARR14(2)                                                      ------->MYC2 <---------MYB111(2)                                                      <-------MYC2 --------->AtMYB61                                                      <-------MYC4 <---------MYB46(2)                                                      <-------MYC3 <---------MYB55(2)              --                                                      ------->MYC3 --------->MYB46(3)              <-                                                     <---------O2------>MYB46(1)                   <-                                                     --------->ANAC55(2)      <---------RAP2.6(3)  <-                                                     --------->O2------>MYB83<---------ANAC58     ---                                                     =====================MYC_MYB               <----                                                     ===========================================bZIP_DOF              =================================================bZIP_DOF  --------->DOF5.7(2)   <-----      ------->TEIL                                   --------->ANAC46------>MYB46(1)           ------   <---------ANAC55(2)                               <---------TGA1a ------>MYB83              <-----   <---------YAB1                                  <---------ALFIN1<---------MYB59   <----------DOF2 ------>YAB1  ---------->DOF2  <----------ID1     ------>ZmHOX2a(2)<---------MYB111(1)      ------>NtERF2 ----->AHL20(2)               <------ZmHOX2a(1)  <-----------------PIF3(1)   <---------ANAC58<------NtERF2 ----->ICU4*TSS     <------------CBF   --------->ZAT6--------->TGA1a --------->MYB52(1)    --------->ANAC46 ->TEIL   <----------DOF2     ===========================HOX2a_HOX2a--------->MYB55(1)  ----------->HVH21   ttattatgtatgctttgaaagagattggattaggagacaaaacactatctgatccacgtgtctcacctaccaaacgttgccgtttcgcttttgacgccgt  729600 ----------->HVH21                                                       <----------DOF2 ------->ANAC55(2)                                          <---------ARR11(3) --------ANAC58                            --------->MYB52(1)       <----------DOF2 --------ANAC55(2)              ------>NtERF2              <---------CCA1(2) --------ANAC58                 <---------RAP2.6(3)       <---------ARR11(3) ------>MYB52(2)               --------->DEAR3(1)         --------->AHL20(1) -----MYB52(1)                 --------->RAP2.6(2)        --------->ARR11(3) --GAMYB                  ---------->DOF2 --------->ARR11(1)--------->ARR11(3) --->At5g28300        ------->TEIL    ---------->DOF2     <---------AHL20(1) ------HVH21     <---------ANAC46  <----------DOF2        <---------AHL20(2)      <------NtERF2    <-   tacttgacaaatcgacactgtgtgaatctaaagccgactttaaagaaacggactacttaatatatctatacttttcttttgggccgagttttagcaaatt  729700                                                       ------->PIF5                                                       ------->MYC2                                                       <-------MYC2                                                       ------->MYC4                                                       <-------MYC3                                                       ------->MYC3                                                       <-------PIF5                                                       <-------MYC4                                                      <---------ANAC55(2)                                                      <---------TGA1a                                                      --------->TGA1a                                                      <---------O2                                                      <--------ABF1                                                      <---------ANAC46                                          <<<<<<<<CAMTA3                                        --------->ANAC58                                        <---------ANAC55(2)                                        --------->ANAC58  <---------CCA1(2)                                        --------->ANAC55(2)                                      <---------ALFIN1--------->O2                                   ----------->HVH21  ======================================bZIP_DOF                                  --------->SPL7     ------>NtERF2                                 --------->ALFIN1   <---------ALFIN1                                ------->PIF5 --------->WRKY45                                <---------SPL7   --------->RAP2.6(2)                                --------->TOE1(2)--------->ANAC58                               <---------TGA1a   --------->ANAC58          *TSS                               --------->O2  ----------->HVH21          --------->REM1(1)                               <---------ANAC58 -------->ZAP1  <---------ANAC55(2)                               <---------ANAC58 --------->MYB46(3)   ------>ZmHOX2a(1)      ---------                 <-----------GT1<-------PIF5 --------->WRKY38(1)    <---------ANAC58        ---------      ===================================bZIP_DOF--------->ANAC46   <---------ANAC58        ---------      ---------->DOF2          <---------O2  --------->WRKY12<-----------GT1     <----------DOF2 --------At4g35610             --------->TGA1a<---------WRKY18(1)  --------->MYB52(2)     --------->LBD16   cagcccatttaagcccattttccctcttaatcgacgtgcgacacgcgttgaccgccacgtgtatcacgttccttacatcttctcttttcttccccagcaa  729800                                                                      ------>ZmHOX2a(2)                                                                      <---------LBD16                                                                <---------ANAC58                                                                <---------ANAC58                  <--                                                            ------>ZmHOX2a(2)                   <----                                                           <------ZmHOX2a(2)                    <----                                                          --------->ARR11(3)                    <----                                        =====================================HOX2a_HOX2a       <-----                                        ===========================HOX2a_HOX2a               <-------                                    <---------ANAC46      --------->ARR14(2)       <---------ANAC58                                    <---------ANAC58      <---------AGP1----------->GT1      <------MYB46(1)                           --------->TOE1(2)              --------->AGP1--------->LBD16      <------MYB83                          <---------At4g35610             <-----------ARR10        <---------ANAC58                          --------->ZAT2==========================HOX2a_HOX2a <---------ICU4 <------- >ANAC58                  <---------ZAT2<------ZmHOX2a(1) <---------ARR11(3) --------->ICU4 --------- >ANAC58                  --------->At4g35610             <---------ARR14(2) <---------YAB1 <-------- -->RAV1(1)    ----------->GT1      <---------ANAC58     <---------CCA1(2) --------->YAB1  --------->ALFIN1   aaaatgagtctgcaaaatagaaaattcaagctgcgattgcgaggaagagaagagacttcagatctagcttgatccggtgataatggcgctcgagtgggtg  729900                  --------->At4g35610                  <-------GAMYB                  <---------At4g35610                  ----------->RAV1(2)                  =========================RAV                  <------NtERF2                 <---------DEAR3(2)                 ------>NtERF2                 <---------MYB46(3)                 <---------RAP2.3(1)                 <---------ERF1                --------->ATERF1(2)                <---------RAP2.3(2)                <---------ATERF1(2)                <---------DEAR3(1)                <---------ANAC46                <---------RAP2.6(2)                <---------RAP2.3(3)               <---------DREB2C(1)               --------->ATERF1(1)               --------->DEAR4(2)               <---------At4g35610               --------->RAP2.3(1)               --------->DREB2C(1)               <------NtERF2              <---------RAP2.6(1)              <---------ATERF1(1)              ------>NtERF2              <---------ORA47(2)              <---------RAP2.3(1)              <---------RRTF1(1)              <---------DEAR4(2)             <---------DEAR3(1)             <---------RRTF1(3)             <---------RRTF1(2)             --------->ALFIN1             <---------ANAC46             --------->DEAR3(1)             <---------ATERF1(2)             <---------RAP2.3(3)                                                                -----             <---------RAP2.3(2)                                                                <----             <---------RAP2.6(2)                                                             --------            <---------ABI4(1)                                                                <-------            --------->ATERF1(1)                                                              --------            ------>NtERF2                                                                    --------            <------NtERF2                                                                    --------           <---------DEAR4(2)                                                              <---------ANAC46        <---------ANAC58                                                                   <---------ANAC55(2)        <---------ANAC55(2)                                                             <------NtERF2        --------->ANAC55(2)                                                             <---------MYB52(1)        <---------bZIP60(2)                                                             ----------->HVH21        <---------ANAC58                                                               <-----------HVH21     <---------ARR14(2)                                                                <---------RAP2.6(3)     --------->ARR14(2)                                                                <-----------TGA1  <---------TOE2(3)                                                                    ------>NtERF2  --------->MYB59<---------ATERF1(1)                                                  --------->RAP2.6(2)  <---------TOE1(3) ----------->HVH21                                                 --------->ANAC46 --------DOF2--------->ATERF1(2)                                                      --------->DEAR3(1) --MYB46(1)<---------RAP2.3(1)     <---------MYB46(3)                 --------->LBD16 --------->RAP2.3(3) -----MYB46(3)<---------ERF1      <---------AtMYB61                  --------->ANAC58 <---------ATERF1(2) --MYB83<---------ANAC46          --------->ALFIN1                   --------->ANAC58--------->ATERF1(1) ----AtMYB61--------->RAP2.3(1)   <---------DEAR3(1)        --------->MYB52(1)       <------NtERF2 --ANAC58  <---------ATERF1(1) <-----------RAV1(1)         ----------->HVH21        <---------ATERF1(1) --ANAC58<---------LBD16       <---------YAB1          <------ZmHOX2a(1)            <---------RAP2.3(1) >MYB55(2)<---------DEAR3(1)<---------ATHB51      ------>NtERF2      --------->ANAC46--------->RAP2.3(1) -MYB46(3)--------->ANAC46  --------->ICU4   <---------TOE2(3)      <---------LBD16<---------DEAR3(1)   gttttaggttacgcggcggcggctgaagcgattatggtggtgctattgacgatgccaggactcgacggactccgcaagggattagtcgccgtcacgcgta  730000   ------>ZmHOX2a(1)                                               --------->ANAC46                 < ---->ARR14(2)                            ------>ZmHOX2a(1)--------->HSFB2a(2)                ------- -----ARR14(2)                            --------------->AGL15    --------->ANAC58           <------ ->ANAC58                                 <---------------AGL15    --------->ANAC58 --------->SPL7 -- --ANAC55(2)                             <-----------------AGL1    <---------ANAC55(2)        ------- ->ANAC46                                <-----------------AGL2    --------->ANAC55(2)  <---------DEAR3(1) ->ANAC58  <---------MYB52(1)            <-----------------AGL3<---------GLK1(1) <---------ANAC58  <- ->ANAC55(2)                <----------DOF2                <---------HSFB2a(2)   <---------ANAC58 ---   atctcctcaaaccgtttctctccatagttcctttctgtctcttcctcttaatggacatctactggaaatacgaaactatgccttcgtgcgatggcgattc  730100                                                                          <---------ALFIN1                                                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                                                         --------->ZAT18                                                                         --------->ZAT14                                                                         <---------ZAT14                                                                         <---------ZAT18                                                                         <------NtERF2                                                                      <---------At4g35610      <-----------HVH21                                               --------->At4g35610      <-----------TGA1                                               <---------RAP2.3(1)  --------->ANAC46                                                  <---------ANAC58  <---------ALFIN1                                                  <---------RAP2.3(2)        <----- ---------ALFIN1                                                    <---------RAP2.6(2)        ====== -->ARR14(2)                             <---------GLK1(1)          <---------RRTF1(2)         ------ ---ARR14(2)            --------->At4g35610                         <---------ANAC46         ------>ZmHOX2a(2) ------->ZAT14      <-----------HVH21    --------->GLK1(1)          <---------ANAC58        <------ZmHOX2a(2) -->GLK1(2)         <-----------TGA1--------->YAB1                 <---------LBD16         <---------ARR14(2) --------ZAT18<-----------ARR10 <-------TEIL                  <---------YAB1               <---------ARR11(3) --->ZmHOX2a(1)    --------->ANAC46--------->ICU4   ---------->DOF2--------->RAP2.6(3)     --------->ARR14(2)   ctgcacaccgtcagagcatcttcgtcaccagaagtccatgatgaaatcccagcgaaacgcgcttctcattgcggctgcacttgtgttctactggatcctt  730200                         ==========================HOX2a_HOX2a                         <------ZmHOX2a(2)                        --------->ARR11(3)                 <------ZmHOX2a(1)        <---------TOE2(2)               <-------GAMYB                               =====================HOX2a_HOX2a               <---------ANAC58                ------>ZmHOX2a(2)                    <---------TOE1(2)               <---------ANAC58                ===================HOX2a_HOX2a      <-----------RAV1(2)              <------MYB83                   <---------ARR14(2)               <---------O2   <-----------HVH21    <---------ARR11(3)   --------->ARR14(2)          ------>ZmHOX2a(2) -----DOF2    <------MYB46(1)               <------ZmHOX2a(1)       <---------WOX13(1)  <-------TEIL ===============================HOX2a_HOX2a ====================================HOX2a_HOX2a      <--- >ZmHOX2a(1) --------->MYB59   --------->GLK1(2)        <-----------RAV1(2)   --------->O2      <----   tactcagtcaccaatttggttgtcaagatcgagcatcttaaccagaggatcgagaggctcaggaacaaggattgatcgtctcgtctcaggttcaattagt  730300  Previous    Next  AGI:  At3g03150.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G17165.1); similar to seed specific protein Bn15D1B [Brassica napus] (GB:AAP37967.1) Range:  from: 727561    to: 729511    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g03160.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G17190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42347.1) Range:  from: 729775    to: 730474    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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