Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            --------->ARR11(3)                                                                             ------>ZmHOX2a(1)    --------->HSFB2a(2)                                                      <---------YAB1       ---    <---------HSFB2a(2)                                              <<<<<<<GRF7   <------ZmHOX2a(1) ------TEIL                                                         <-----------HVH21     <---------ARR11(3) -----GLK1(1)                                                      ----------->HVH21     <---------CCA1(2) >ANAC58                       ----------->GT1        <---------MYB52(1) --------->ARR14(2)      ---- >ANAC58                 --------->At4g35610         --------->TOE2(3)   <---------ARR14(2) ---------   attcgtctagatgggaacacaagaagaagcagaatgtgaatacttgtttgtttttcgttagagacttccctgacaggtcctcataggaaacatatcttaa  645400       ------>MYB46(1)                                               --------------->AtSPL8       ------>MYB83                                                  <---------------AtSPL8     <---------MYB59                                            <----------DOF2    --------->MYB46(3)                   --------->YAB1       --------->ZAT2  <-----------GT1                       --------->ICU4        <---------ZAT2                 -------- ------>DAG2                   --------->ATHB12           --------->YAB1            <---------DEAR3(1) ------>DOF2                  <-------TEIL               <---------ATHB12       <---------At5g28300 >TOE2(3)                 <---------YAB1<---------YAB1 --------->WOX13(1)       <---------LBD16   aaagtaaccaaactagtgtctcttaattttgattcatttgttatcatgaagaagacccaatcacagctttgtttgtacatattacggcgatgggcaaaag  645500                                   <---------At4g35610                                  --------->ARR14(2)                               <---------WOX13(1)                          <---------ANAC58                          <---------ANAC58                          >>>>>>>>>>WRKY18                        <---------WRKY18(1)                       --------->WRKY12     <---------At4g35610                      <---------WOX13(1)    --------->At4g35610                     <-------GAMYB<---------ARR14(2)                    <---------MYB46(3)--------->At4g35610                   <---------TOE2(3)------>ZmHOX2a(2)         <---------ARR11(3)  <---------WRKY18(1)                         <-----------GT1          ---  ----------->HVH21<---------YAB1<---------ZAT14                     <----------DOF2      ------->TEIL -->DOF2 --------->ARR11(3) ----------->HVH21  ---------->DOF2    <-----------GT1      <---------YAB1   acatatgacaagatgttgattttggttgacttgactgatctgcttaagctaaagtgtgttttggctaatttcttttctctcttctgtttatgaatcttgt  645600                                                              --------->ARR14(2)                                                              <---------ARR14(2)                                                              <---------ICU4                                                             --------->ICU4                              <---------At4g35610    <---------AtMYB61              <------ZmHOX2a(1)                              --------->At4g35610  <---------ANAC46            --------->YAB1                   <-------TEIL                 <-----------RAV1(1)        ==========================                <---------DEAR3(2)       ----------->GT1--------->bZIP60(1)--------------->AGL15 ------>ATHB12  <---------MYB46(3)     ---------->DOF2  <---------bZIP60(1)<---------------AGL15   tcattgaagagatagcatcggttcatcgaagcagttgattcgaaagtgaaatgttgtggtgtcatatttgcgaattacaaataataggaagggttttagc  645700              <---------ANAC58                  --------->GLK1(1)              <---------ANAC46                 --------->ARR14(2)                         <---------SPL7              <---------ANAC58        --------------->AGL15                              <---------ANAC46          <---------ANAC58            <---------------AGL15                              <---------ANAC58          <---------ANAC58      <---------ANAC55(2)    <---------HSFB2a(2)               <---------ANAC58  --------->ANAC55(2)           --------->ANAC55(2)    --------->HSFB2a(2)     <---------ZAT18  <---------ANAC55(2)         --------->ICU4   <---------ARR14(2)              --------->ZAT18 =====================================================MADS_MADS            <-----------RAV1(1)   aaataagtaattccttgagtgtattttgggaaataagtaactcttaagggatatgttttagaaaatagataactcttctggtggacaaatggcgtatgtg  645800                               ------>ZmHOX2a(2)                              <------ZmHOX2a(2)                        <---------ZAT2                              <---------GLK1(1)                        --------->ZAT2                             --------->ARR11(3)                        --------->At4g35610                             <---------ARR11(3)                        <---------At4g35610                             <---------ARR14(2)                     <---------At4g35610                             --------->AGP1                         --------->At4g35610                             <---------AGP1                   ------>ZmHOX2a(1)                 *TSS        --------->ARR14(2)              --------------------->WRI1   <---------MYB52(1)                 <-----------GT1                           <------NtERF2               <-----------RAV1(2)                <<<<<<<<<MYB98--------->GLK1(1)          <---------ANAC46         <----------DOF2       ===============================HOX2a_HOX2a        <---------ANAC58     <---------CCA1(2)       ------>ZmHOX2a(1)    <---------CCA1(2)            <---------RAP2.6(2)<---------CCA1(2)       ==============================HOX2a_HOX2a         <---------ANAC58   ------>ZmHOX2a(1)   -----   ttcgtcttcctcttgtatgttactcttctcagatctcttgttcgttttgatgtacaatggcgtccttggtagcagctcctatctctttctcaggtagtca  645900                                                                                                 <---                                                                                           <-------TEIL                                                                                          --------->ARR14(1)                                                                                          --------->CCA1(2)                                                                                         --------->ARR11(1)                                        <---------CCA1(2)                                --------->ARR14(2)                                      ------>ZmHOX2a(1)                                  <---------ARR14(2)      <-----------GT1            <---------ANAC58                                        <---------GLK1(2)  <----------DOF2                <---------ANAC58                                       <---------HSFB2a(1)  <---------DAG2            --------->ATHB12                                  --------->LBD16    ---- ---->WOX13(1)           <---------At4g35610    ---------->ID1            -------->P   ----------->ARR10   atcgcttttttctcttctccagttttcagttcattgcttcctctatcttcttcgttttgaactcaaatttctgagtaacccgagagagaaagattcgccg  646000                                                                       <---------TOE2(3)                                                                      <-----------GT1                                                                     <-----------GT1                                 --------->ARR14(2)            <------MYB46(1)                                 <---------TOE1(2)             --------->ANAC55(2)                                 ------->TEIL                  <------MYB83                                 <---------ARR14(2)           --------->MYB46(2)                                 <---------ARR11(1)           --------->MYB52(2)                                 <-----------ARR10            --------->MYB111(1)                                <---------ARR14(1)            --------->MYB59                                <---------CCA1(2)            <---------MYB55(1)       --------->YAB1        <---------ANAC58      --------->TOE2(1)             <<<<<<<<<MYB98           <------ZmHOX2a(2)        <---------ANAC58      --------->TOE1(1)             <---------MYB52(1)       <---------YAB1 ------ARR14(2)              ------>ZmHOX2a(1)             <-------GAMYB            --------->ARR11(3) ----->ARR14(2)          <-----------GT1         --------->YAB1<---------ANAC55(2)  <---------ARR11(3)   atttgcatttgcttactcattcaaatttatcctcgtatcttcgattagtattcaaaatttccgttaggtatttaacattttagcgagatcatagtttgtt  646100                                              --------->ANAC46                                          <---------GLK1(1)                  <---------YAB1                                    --------->MYB52(1)                  ------>MYB83                                 --------->ANAC46 --------->GLK1(1)     ------>MYB46(1)                            --------->ARR14(2)--------->ANAC58    ------->GAMYB <---------YAB1                            <---------ARR14(2)--------->ANAC58 <-----------GT1--------->ATHB12                     ---------->DOF2---------->DOF2<---------ARR14(2)  ----------->RAV1(1)                --------------->AGL15 <---------TOE2(3)        --------->MYB52(1)                <---------------AGL15--------->DAG2--------->ARR14(2)--------->MYB46(3)   catagtctgaaactagttcaacatatagcaaatcgacgtaaaggaaatacgaaaatccactgatataacggaccaacatatgattagagacctgtgtatt  646200                           <---------DAG2                  <---------MYB52(1)                                                <---------GLK1(2)            --------->ARR11(3)                                                     <---------HSFC1(2)            <---------ARR11(3)                                                     --------->At4g35610            --------->ARR14(2)                                                     --------->HSFC1(2)            <---------ARR14(2)                                                     <---------At4g35610            <---------ARR11(1)                                               ========================           <---------CCA1(2) --------->AHL20(2)                            --------->MYB46(3)      <-      <-----------GT1      --------------->AGL15             <---------ZAT14 ---------->DOF2    <----   <---------GLK1(1)       <----------DOF2                   --------->ZAT14--------->AtMYB61 <------   tgagggtttctccatatctcgttagattactttatatatgaaaactcacttgcattttcagagtttactcaaactgaaccaaagcagcttcttgattcac  646300  Previous    Next  AGI:  At3g02890.1    Description:  PHD finger protein-related. similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT5G16680.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62131.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011) Range:  from: 641050    to: 645310    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g02900.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G16660.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62132.1) Range:  from: 645817    to: 647655    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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