Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       --------->ANAC58                                     --------->ANAC46                                     --------->ANAC58                                    ------>MYB83                 ---------->DOF2  ------->GAMYB                                          ------>MYB46(1)              --------->TOE2(3)  <---------ALFIN1                                      --------------       <---------YAB1         <---------ICU4                                           <---------MYB59     <-----------GT1          --------->YAB1                                           <-------------  --------->ANAC58           <---------ATHB12                                          --------->TOE2(3)  --------->ANAC58    <---------WRKY12      <-------TEIL--------->TOE2(3)     ------->GAMYB   agccaagttactattacatcaaagtcaactaatcaacacacctaagttcataaaccattgttaatcgaaaaaaactccaactcccataacctaatttagt  604300                               --------->DEAR3(1)                            ------->GAMYB                            --------->ANAC46                           --------->MYB46(3)                          --------->MYB52(1)                          ------>MYB46(1)                          ------>MYB83                         --------->MYB55(1)                        <---------MYB59                        <---------MYB55(2)                        --------->MYB46(3)                        --------->AtMYB61                      ------>MYB46(1)                      ------>MYB83                     --------->ORA47(1)                    --------->DREB2C(2)                    --------->DEAR4(1)                                                   --------->ANAC46                    <---------MYB55(2)                          <----------ID1           --------->ANAC58                    --------->MYB46(3)           --------->HSFC1(1)       <-------TEIL   --------->ANAC58                    --------->DEAR3(1)           --------->HSFB2a(2)      <-----------------AGL1  <-----------GT1   <---------MYB46(2)           <---------HSFB2a(2)  <---------------AtSPL8 ->AGL15           --------->DEAR3(2)            <---------HSFC1(1) ---------->DOF2     ------->GAMYB --AGL15 --------------------->WRI1            <-------TEIL   ---------->DOF2          <---------ALFIN1   caattttccttccattttctcaccgaccaaacgccgaagacaaaccaggttcgagaacacaacttaaagacaaaggtacaattttggcaacacccaaaaa  604400                                                       --------->O2                                                       <---------O2                             -----                                                       ========================================bZIP_DOF                                                       --------->TGA1a                    --------->ARR14(2)                                                       <---------TGA1a                    <---------ARR14(2)                                                 --------->TOE1(2)                        --------->GLK1(2)                           ======================================bZIP_DOF           <----------DOF2                 --------->GLK1(2)              --------->YAB1                   <---------ARR11(3)     ---------->DOF2       ---------->DOF2 ------>ZmHOX2a(1)  --------->ZAT14   <---------GLK1(2) --------->GLK1(1) --------->YAB1         --------->TOE2(3)   <---------ZAT14 --------->ANAC46<------   ctgaaatcaaagtagagagaatcaaaaatcaaagacttactcatcctcaaacatgagacgtctctgaacagcatccataccagcatctttagtatctgtc  604500                                 <----------DOF2                            --------->At5g28300                          --------->MYB59                       <---------ARR14(2)                       --------->ARR14(2)                      <---------HSFB2a(1)                      --------->HSFB2a(1)                                                       -----                      <---------HSFC1(2)                                                      -------                      --------->HSFC1(2)                  <------ZmHOX2a(1)         ---------->DOF2                  --------->ANAC58                     --------->At4g35610   ------------------------   <---------SPL7 --------->ANAC58                     <---------At4g35610 ---------->DOF2  --------- ---->YAB1        --------->ANAC46      --------->At5g28300           --------->ARR14(2)    --------- -----HVH21 ---------->DOF2----------->GT1        ----------->HVH21   <---------ARR14(2) <----------ID1   atagcggtaccagagaaagcacgaaaattcggtaactttctcggtgaaatcgatgacagaggacgatgggcaaatcggaaagaagaaaaagaagacgaaa  604600       <------ZmHOX2a(2)                                                --------->ALFIN1       --------->CCA1(2)                                               <-------MYC2      <---------AGP1                                                   ------->MYC3      --------->AGP1                                              <---------ANAC46      --------->ARR11(3)                                        <-----------HVH21      <---------ARR11(3)                                       --------->ALFIN1      --------->ARR14(2)                                     <---------ANAC58      <---------ARR14(2)                                     <---------ANAC58     <---------GLK1(1)                                       <---------ANAC46              *TSS     --------->GLK1(1)                                     <------MYB83<-------MYC3       <---------ARR14(2) ----->DOF2                    <---------AHL20(2)          <------MYB46(1)                --------->ARR14(2) --->DOF2                     --------->AHL20(2)          <---------AtMYB61      <---------WOX13(1) >ANAC81           --------->ATHB12                      <--------P    ------->MYC2    <---------ANAC58 >ANAC58          <---------ATHB12 ---------->DOF2     <-----------RAV1(1)    <---------YAB1 >ANAC58------>ZmHOX2a(2)  ----------->GT1  --------->At4g35610<-----------RAV1(1)     <---------ANAC58   gagcgagagatctgaggcgaatcaatgggagattaaataaagaagaagcagacattggtgttggtgtgtcgcatgtggtgatgactgatgcgtttctgcc  604700                            <---------ICU4                            --------->YAB1        --------->ANAC46                      <---------ALFIN1          --------->ANAC46                 --------->MYB59                <---------ALFIN1           <---------AHL20(1)                 <---------ALFIN1           <---------AHL20(2)                <---------REM1(2)           --------->AHL20(2)            --------->AtMYB61     <----------DOF2 --------->ETT(2)    <---------ALFIN1   --------->ANAC58                ---------  <---------ANAC58   --------->ZAT18   ------->TEIL         --------->ANAC58                <--------  <---------ANAC46   <-------TEIL   --------->AtLEC2        --------->ANAC46             <-----------GT1  <---------ANAC58  --------->TCP16(2)<---------ALFIN1     ------->GAMYB          <---------TOE2(3)   tactgcgttttattttatttaggtccacagtcattaccatgcacctctccacacactataacaccccaaaaaacaaaatcagataagattatttccattt  604800                      <-------TEIL                  --------->ARR11(3)                  --------->AHL20(1)           ----------->GT1      --------->AHL20(2)      <---------AHL20(2)     --------->AHL20(1)    --------->RAP2.6(3)                                      <---------ANAC58     --------->AHL20(2)   <---------ARR14(2)        *TSS                    <---------ZAT6     <---------AHL20(2)   --------->ARR14(2)   --------->YAB1         <---------ZAT6<---------ANAC58     <---------AHL20(1)--------->YAB1     ------>ZmHOX2a(1)          <---------TOE2(3)  --------->YAB1  <---------ARR11(3) <---------ANAC58      <---------ZAT18 <---------TOE1(3)    ----- ------>AGL15    <---------AHL20(2)  <---------ANAC58      --------->ZAT18 <---------TOE2(3)    ----- -------AGL15  <-----------TBP--------->At4g35610--------->At4g35610 <---------TOE1(3)   <-----------   ttaaaaataaaattagtatatatattcatatcggctctcgcgtcctaaatcagaagagtagagcacaaattagggttagggttagggcttctcccttcct  604900                   <---------RAP2.6(3)                   ------>NtERF2                  --------->RAP2.6(2)                  >>>>>>>>>AtERF-5                  >>>>>>>>>AtERF-4                  >>>>>>>>>AtERF-1                                                              -----                  >>>>>>>>>AtERF-3                                                              -----                  --------->DEAR3(1)                                                            -----                  --------->RAP2.3(2)                                                          ------                  >>>>>>>>>AtERF-2                                                  <------ZmHOX2a(2)                  --------->ANAC46                                                  =================                  --------->RAP2.3(3)        --------->ANAC58                      --------->ARR11(3)                 --------->ERF1              --------->ANAC46                      <---------ARR11(3)        <<<<<<<<<NAM<------NtERF2<---------ANAC46                        <-------TEIL         <------    <-------TEIL --------->RAP2.3(1)         --------->ANAC58           --------->CCA1(2)    <------- ->ZmHOX2a(1)   --------->At4g35610   --------->SPL7                    --------->GLK1(2)<---------ZAT2 ---->LBD16     <---------At4g35610  <--------P                     =======================HOX2a_HOX2a ------AGL1<----------DOF2  <---------At4g35610  ---------->DOF2    <------ZmHOX2a(1)    --------->ZAT2   ggcaaattcatcccttttagccgccattgaagatgactggtaaggccaagccaaagaagcatacagcgaaggagattcaagcgaagatcgatgctgcgtt  605000                        --------->ARR14(2)                                                  ---------                  --------->GLK1(2)                                                         <--------           <------NtERF2<---------GLK1(2)                                                   <--------         <---------DEAR3(1)                                 --------->ANAC46               <---------At5g28300 ---->WRKY12     --------->DAG2            ---------->DOF2  --------->ANAC58               --------->RAP2.6(3) ---->WRKY45  ===========================HOX2a_HOX2a        --------->ANAC58   --------->ATHB12    -- ---->WRKY38(1) ---------->DOF2         --------->LBD16 --------->ATERF1(1)    <---------ICU4     <-- --->DOF5.7(2)<------ZmHOX2a(1)    <---------SPL7      <---------ATERF1(1)    <---------YAB1<-------- ====================HOX2a_HOX2a   ----------->HVH21   --------->ANAC58       ------>ZmHOX2a(1) ----- -GAMYB  <---------ANAC46         ------>ZmHOX2a(2)    --------->ANAC58   --------->ZAT18 <---------- --ANAC46--------->ALFIN1     ----------->HVH21  ---------->DOF2          <---------ZAT18 --------->MYB52(1)   gactaatcgaggcggaggaaaagctggaatcgctgatcggaccggaaaagagaaaggaggccacgctaagtacgagtgtcctcattgcaaaattacggct  605100                                   --------->HSFC1(2)                                   --------->HSFB2a(1)                             ------->TEIL                          --------->ANAC58                          --------->ANAC55(2)                          <---------ANAC55(2)                          --------->ANAC58                     --------->WOX13(1)                    <-------TEIL   <---------HSFB2a(1) <---------ARR11(3)=============================HOX2a_HOX2a >ANAC55(2)        <------ZmHOX2a(2) -ANAC55(2)       --------->ARR14(2)                                     ------->TEIL -RAP2.3(2)       <---------ARR14(2)               --------->YAB1        --------->ARR14(2) ------->LBD16    --------->AGP1   <---------HSFC1(2)    <------ZmHOX2a(1) ---------RAV1(2) --------->ARR11(3)          <---------YAB1             <---------ARR14(2) -RAP2.6(2)       <---------ARR11(3)         --------->ARR11(3)         <---------CCA1(2)          -- ->NtERF2        --------->At4g35610         <---------ARR11(3)     ----------->GT1                <- -GT1            <---------At4g35610     ------>ZmHOX2a(1)    ---------->DOF2               ---------   ccaggtcttaagacgatgcagatccatcacgaatcgaagcatcctaatatcatttatgaggaatcaaagctcgtgaatctccatgctgttttagcaccag  605200  Previous    Next  AGI:  At3g02780.1    Description:  IDI2/IPIAT1/IPP2 (ISOPENTENYL DIPHOSPHATE ISOMERASE 2, ISOPENTENYL PYROPHOSPHATE:DIMETHYLLALLYL PYROPHOSPHATE ISOMERASE 2); isopentenyl-diphosphate delta-isomerase. Identical to Isopentenyl-diphosphate Delta-isomerase II (IPP2) [Arabidopsis Thaliana] (GB:Q42553); similar to IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1), isopentenyl-diphosphate delta-isomerase [Arabidopsis thaliana] (TAIR:AT5G16440.1); similar to isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Brassica oleracea var. botrytis] (GB:AAF36996.1); contains InterPro domain Isopentenyl-diphosphate delta-isomerase; (InterPro:IPR002667); contains InterPro domain NUDIX hy Range:  from: 602440    to: 604691    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g02790.1    Description:  zinc finger (C2H2 type) family protein. similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT5G16470.1); similar to unknown [Populus trichocarpa] (GB:ABK94760.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880) Range:  from: 604852    to: 605428    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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