Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             --------->At4g35610                 ====================================HOX2a_HOX2a                 =======================HOX2a_HOX2a                 <------ZmHOX2a(2)                --------->ARR14(3)                --------->AGP1                --------->ARR14(2)                <---------ARR11(3)                <---------ARR14(2)                --------->ARR11(3)                <---------ARR14(3)               <---------GLK1(1)                <-----------RAV1(2)               --------->GLK1(1) <------ZmHOX2a(1)      ----------->RAV1(1)  <---------At4g35610<------ZmHOX2a(1)  --------->ANAC46======================HOX2a_HOX2a           <---------At4g35610  --------->ANAC58------>ZmHOX2a(2)       <---------TOE1(1)   <-------GAMYB                        --  --------->ANAC58===================================HOX2a_HOX2a<---------MYB46(3)             ------   tatcacgacaacattggagatcttgatggagcagaggagaaggaacgaggacaggcgagaattcagttgttcatatcagcgatgtgatttagagaaggaa  585800                                     <-----------GT1      --------->CCA1(2)                                 <--------HAHB4          <---------ARR14(2)                                --------->ICU4           --------->ARR14(2)                            <------MYB83                 <---------ARR11(3)                            <------MYB46(1)        <---------PCF2                         <---------ANAC58          <---------PCF5                           <--------                         <---------ANAC46          --------->TCP20                          <-------- -------->DOF2           <---------ANAC58 ----------------->AGL1                         <-----------GT1 ---->DOF2      --------->AtLEC2<---------YAB1 --------->TOE1(2)                        <---------ATHB12   agaaagaagttagaaatcgtgcaaatggcttggtattattaacttccaacatgggaccagatatactctgtttatttcagagtcgagcaaatcacttttt  585900                                                                                                  <--                                                                                                  ---                                                                                                 <---                                                                                      <---------At4g35610                                                           <---------------AtSPL8     --------->At4g35610                                                      <---------DAG2    --------->AHL20(2)       <--- --DOF2            <----------DOF2                    <----------DOF2  --------->AHL20(2)      ------ -DAG2         <-----------GT1  <---------ATHB12    <-----------------AG<---------AHL20(2)  <--------   ctggttttatagtattgtgacctttcaagtttcaatcgatttgggttacaaacttacttttttggtacttagatttatttagccttgaagcttactttca  586000                                                                                                    -                                                                                                   <-                                                                                                  <--                                                                                                  xxx                                                                                                 <xxx                                                                                                 <xxx                                                                                                -----                                                                                                -----                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               ------                                                                                               <-----                                                                                              -------                                                                                              xxxxxxx                                                                                              <------                                                                                              xxxxxxx                                                                                              <------                                                                                              <------                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             *TSS----                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx      <-----------GT1                                            <---------YAB1              xxxxxxxx    <-----------HVH21                                           --------->AHL20(2)           xxxxxxxx  --------->LBD16                                               <---------AHL20(2)           xxxxxxxx --------->ANAC55(2)                                            --------->AHL20(1)           xxxxxxxx <---------ANAC58                                             <---------YAB1                 xxxxxxxx <---------ANAC58                                  ----------->GT1--------->YAB1             xxxxxxxx <---------ANAC55(1)                             <---------At4g35610                         xxxxxxxx -------ARR14(2)                            <---------At4g35610<---------ICU4             --------->ALFIN1 ------>ARR14(2)                            --------->At4g35610--------->YAB1            <-------MYC3 ------GLK1(1)                          <---------ANAC58   <---------AHL20(2)            ------->MYC3 ------CCA1(2)          <---------DAG2<-----------ARR10    --------->AHL20(2)  --------->ETT(2)xxxxxx --->YAB1  ------>MYB83 <----------DOF2 <---------ANAC58  --------->AHL20(2)   <---------ETT(2)xxxxxx --DOF2    ------>MYB46(1)    <----------DOF2    --------->At4g35610        <---------REM1(1)xxxxxxxx   tatccgtgttacctcccagtgagaaactttttctttggagtagcttagctaagctgtatatttaattataatagatagttgtagacagacatgtggacgt  586100     <---------MYB46(3)    --------->ALFIN1 <------NtERF2 -------->LBD16 --------ANAC46 -------LBD16 xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxsmallRNA(i) ------>HVH21 ---->ALFIN1 xxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxxxxxx>smallRNA(se3) ->PIF5 --PIF5 -->TGA1a xxxxxxxxxxxxxxxx>smallRNA(se3) ---ANAC58 xxxxxxxxx>smallRNA(s) ---ANAC58 ---TGA1a  <---------LBD16 xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxx>smallRNA(si3) xxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxx>smallRNA(si3) xxxxxxxx>smallRNA(le3) xxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxx>smallRNA(fl3) xxxxxxxxx>smallRNA(si3) xxxxxxx>smallRNA(le3)                                               <---------ANAC55(2) xxxxxxxxx>smallRNA(le3)                                             --------->ANAC58 xxxxxxxxxxxxxxxx>smallRNA(le3)                                <---------ANAC46 xxxxxxxxxxx>smallRNA(le3)                              <---------ARR14(2) xxxxxxxxxxxx>smallRNA(le3)                            xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(fl3)                     <-------TEIL     --------->ANAC55(2) xxxxxxxxxxx>smallRNA(fl3)                         xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxx>smallRNA(i2)                     <---------HSFB2a(1) --------->ANAC46 xxxxxxxx>smallRNA(s)                          <-----------RAV1(2)   --------->ANAC58 ----->MYB52(1)                                xxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxx>smallRNA(i)                          xxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxx>smallRNA(i2)                    xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxx>smallRNA(s2)                 --------->ANAC46  <---------ANAC58 xxxxxxxxxxxx>smallRNA(fl3)                 <------NtERF2xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxx>smallRNA(fl3)                      xxxxxxxxxxxxxxxx>smallRNA(s)------->TEIL xxxxxxxx>smallRNA(fl3)                     --------->LBD16    <---------ANAC58 xxxxxxxxxxxxxxx>smallRNA(fl3)          ------>NtERF2 xxxxxxxxxxxxxxxx>smallRNA(s)--------->AHL20(2) xxxxxxxxxxxxx>smallRNA(fl3)           ----------->HVH21--------->ARR14(2)       --------->AHL20(2) xxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxx>smallRNA(s)<---------DOF5.7(2) xxxxxxxxxxxx>smallRNA(se3)           ---------->CDC5xxxxxxxxxxxxxxxx>smallRNA(s)<---------AHL20(2) xxxxxxxxxx>smallRNA(se3)            <---------ATERF1(1)xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxx>smallRNA(se3)     <---------PCF2xxxxxxxxxxxxxxxx>smallRNA(s)--------->AHL20(2) xxxxxxxxxxxxxx>smallRNA(le3)      --------->ZAT18xxxxxxxxxxxxxxxx>smallRNA(s)<---------------------- xxxxxxxxxxx>smallRNA(se3)       --------->ZAT18 --------->HSFB2a(1) --------->ANAC55(1)     <------- xxxxxxxxx>smallRNA(se3)         <---------RAP2.3(3)xxxxxxxxxxxxxxxx>smallRNA(s) <---------AHL20(1) xxxxxxxxxxxxxxxx>smallRNA(si3)  <---------ZAT18<---------TOE2(2)--------->DOF5.7(2)      ---------->ID1 xxxxxxxxxxx>smallRNA(se3) <---------ATHB12 <---------LBD16 ------>ZmHOX2a(1)<---------AHL20(2) xxxxxxxxxxxxx>smallRNA(se3)    --------->ALFIN1<---------TOE1(2)<-----------HVH21<---------AHL20(2)   gccggagtggttatcgggcatgactagaaatcatgtgggctctgcccgcgcaggttcgaatcctgccgttcacgtatttttaatttaattttgttctttt  586200                                            ------->MYC2        ----------->HVH21      --------->ARR11(3)                    ------->MYC4       <-----------HVH21      --------->GLK1(2)                     <-------MYC3     <------NtERF2                 <---------ICU4      <---------ARR14(2)                    ------->MYC3    ------>NtERF2                 --------->ICU4      --------->ARR14(2)                    <-------MYC2   <---------DEAR3(1)   <-----------HVH21     --------->RVE1(1)                    ------->MYC3     --------->DEAR3(1)  --------->LBD16   --------->AHL20(2)                     <-------MYC3   <-----------HVH21   <---------LBD16<-------- --ANAC81                         --------->O2--------->At4g35610         --------->At4g35610 ---DOF2                       *TSS ----------->HVH21   --------->ANAC46  <---------At4g35610   ttaaaaaaaatctggcatacttgtgaaactgaaaccacatgacacatgtgctccctaaacgtcgccgtgaccagatagctccggtcagagtcattatctc  586300                                                                          --------->WRKY38(1)                                                                         --------->At5g28300                                                                        ----------->GT1                                                  --------->HSFB2a(2)  <---------DEAR3(1)                                                  <---------HSFB2a(2) <---------------------WRI1                                            <---------ZAT18           <---------ZAT14               <                       <---------CCA1(2)   <---------ANAC58           --------->ZAT14       <-------- -ARR11(3)             <---------At4g35610 <---------ANAC58           --------->ZAT18       <--------   tctctcgctcgctctctccatcttcatctctcttgctgaaaaatggcgaactcgagaactgtcttaatcttgtgcggtgactacatggaagactacgagg  586400                                                                                              <------NtERF2                                                                                            <--------                                                                                            <--------                                                                                       ==============                      <----------DOF2                              --------->AHL20(2)  <-----------RAV1(1)                  <---------ZAT14          <-----------GT1         <---------AHL20(2)  --------->ALFIN1            <---------At4g35610  <----------DOF2           ---------->ID1   --------->ZAT2  <-------- ---------At4g35610   <---------DAG2  --------->TOE2(3)<---------ANAC58     <---------At4g35610 -TOE2(1)<---------At4g35610   ---------->ID1          <---------ANAC58     --------->At4g35610 -TOE1(1)------>ZmHOX2a(1)    <-----------GT1          <---------ANAC46     <---------ZAT2  <--------   tcatcttcttcctctgctactgaacttttttttttctttttcttaataccatttcttccttgttcttatatatatatcagctgattagtgtgtggcgtct  586500                                                                                                   --                                                                                               ------                                                                                               ------                                                                --------->LBD16               -------                                                           <---------ATERF1(1)                -------               <---------ANAC58                          ----------->RAV1(2)                  -------               <---------ANAC58                         <-----------HVH21    --------->At4g35610 ----      --------->ALFIN1                                 --------->DEAR3(1) <---------ZAT2      <------      ----------->HVH21                             --------->ANAC46      <---------At4g35610<-------    --------->At4g35610                       --------->DEAR3(1)--------->ANAC58             --------    <---------At4g35610                     <---------At5g28300<---------LBD16               --------  <-----------RAV1(2)                      <-----------GT1 ----------->HVH21 ----------->GT1 -------- -ANAC58      <-----------------------TaNAC69(2)    <---------ALFIN1   ---------->DOF2      <-------- -RAP2.6(2) <---------ARR14(2)    <----------DOF2 <---------ALFIN1 ---------->DOF2          ------>NtERF2 =============RAV        <----------DOF2  --------->MYB46(3)   --------->LBD16             <---------ALFIN1 -ANAC46    --------->ARR14(2) --------->ANAC58  <---------ZAT18--------->ANAC58          --------->MYB46(3) -ANAC58  <---------MYB46(3)   --------->ANAC58--------->ORA47(1)--------->LBD16        --------->PCF2   tctctcaggtgatggttccgttccaagctttacaagctttcggaatcaccgtccacaccgtctgccccggaaagaaagctggtgactcttgccccaccgc  586600                                                           <---------ANAC58                                                       <---------ZAT2                                                       <---------At4g35610 <---------DOF5.7(2)                                   --------->At4g35610 ------->DOF5.7(2)                                 --------->ALFIN1 >NtERF2                                          ------->MYC3 --->ABI4(1)                                      <-------MYC3 -->DEAR3(1)                                ------>ZmHOX2a(2) >GAMYB   <-----------RAV1(1)              --------->GLK1(1)                              ----------- -->DREB2C(2)                              <------ZmHOX2a(2)              <-----------GT1 <---------- ----->DEAR3(1)                            <---------GLK1(1)            --------->CCA1(2)<----------- ---ALFIN1=====================RAV        <---------AGP1   <---------ANAC46              <----------- --MYB55(2)                               <---------ARR14(2)     ------>ZmHOX2a(2)       ------------ ->DEAR3(2)                               <---------ARR11(3)   <---------ARR11(3)        ------------ ->MYB46(3)                               --------->ARR14(2)<----------DOF2            <-----------GT1 ->DEAR4(2)        <-----------RAV1(2)    --------->ARR11(3)<---------WOX13(1) >>>>>>>>>>>>>>>>>LFY -ATERF1(1)      ------>NtERF2           <---------CCA1(2) <---------ANAC58    <------ZmHOX2a(2)   cgttcacgatttttgtggccaccaggtttctctctccctctctagatctccatgtgtagctgcttgatctattgatatacgatccattgtaactatattt  586700  Previous    Next  AGI:  At3g02710.1    Description:  nuclear associated protein-related / NAP-related. similar to unknown [Picea sitchensis] (GB:ABK24423.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22227.1); contains InterPro domain Protein of unknown function DUF1716, eukaryotic (InterPro:IPR013180); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Armadillo (InterPro:IPR000225) Range:  from: 583120    to: 585955    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g02715.1    Description:  pre-tRNA. tRNA-Ser (anticodon: AGA) Range:  from: 586093    to: 586174    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g02720.1    Description:  DJ-1 family protein / protease-related. similar to YLS5 (yellow-leaf-specific gene 5) [Arabidopsis thaliana] (TAIR:AT2G38860.2); similar to unknown [Populus trichocarpa] (GB:ABK93608.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22224.1); contains InterPro domain Peptidase C56, PfpI; (InterPro:IPR006286); contains InterPro domain ThiJ/PfpI (InterPro:IPR002818) Range:  from: 586231    to: 588372    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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