Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                <------                                                                                              -------              ---------->DOF2                                                                --------              --------->GLK1(1)                                               ---------->DOF2--------             <---------ARR14(2)                                    ---------->DOF2        <---------ARR14(2)             --------->ARR14(2)                               --------->ARR11(3)       <---------TOE2(3) --->DOF2--------->At4g35610         ---------->DOF2          <---------ARR11(3)      <-----------GT1   gggtgtttagaagcagaaatgccaactaatacattgactaaaagaaaccaatttcacagaaatagatatcaaagaatacacaaagtattgacgatactaa  541300                                                            <---------AGP1                                                            --------->ARR11(3)                                                            --------->ARR14(2)                                                            <---------ARR14(2)                                                            <---------ARR11(3)                                                            --------->AGP1                                                           <---------CCA1(2)                                                       --------->TOE2(3)                                                       --------->TOE1(2)                                                       --------->TOE1(3)                                                --------->YAB1        --------->MYB52(1)                                                --------->AHL20(2)  <------------MYB.PH3(2)     -----                                            <---------AHL20(2)      <---------MYB52(2)          -----           <-----------GT1                  --------->AHL20(2) ----------->GT1                 ------ ---------AGL15                             --------->AHL20(1)------>ZmHOX2a(2)      ----------->GT1 -------->AGL15                            --------->AHL20(2)<------ZmHOX2a(2)       <-------TEIL   - --------->AGL2            ------------------------>ANAC81----------->ARR10         <--------P<------ --------->AGL3     ---------->DOF2----------->GT1  <-----------GT1 --------->MYB46(3)   --------->AHL20(2)   aaacagaaatttttcacaagactaaagaagatgaaacaagataaaaaaaattataaaccttagatctgtaacaaactgtttacaaggtagataaattccg  541400       ------->TEIL     ------->GAMYB                                            <------NtERF2  --------->MYB52(1)                                       <---------At4g35610  <---------DOF5.7(2)                                      --------->At4g35610 ->NtERF2--------->TOE2(3)                          --------->ANAC58 ---->LBD16     ---------->DOF2                     --------->ANAC58    --------->ALFIN1 --->ANAC46 ---------->DOF2               <---------WOX13(1)<---------DEAR3(1)---------->DOF2     <-- -------->DOF5.7(2)                    <---------YAB1   ---------->DOF2<-----------HVH21         ---- ---LBD16--------->TOE1(3)       <---------MYB52(2) --------->ANAC46--------->DAG2     >>>>>>>>>TBF1   ccattaacggaccttaaagaaagagggagagagaaacaaacctgattgttcaagacgaaacagcggcgataagggtgagggaaagagaagaagaaacaga  541500                                                                                      <---------ICU4                                                   <---------ZAT14                    --------->ATHB51                                                   <---------ZAT18                    -------->HAHB4                      ----------->TBP              --------->ZAT18                    --------->YAB1                  <---------DAG2                   --------->ZAT14                   <---------YAB1              <---------ZAT14                    --------------->AtSPL8              --------->ICU4              --------->ZAT18                    <---------------AtSPL8            <---------ICU4            ------->TEIL                        <---------ANAC46                   --------->YAB1          *TSS<---------ZAT18             <------MYB46(1)                         <---------YAB1         <---------YAB1 <---------AHL20(2)<------MYB83                            --------->ICU4         --------->ICU4--------->YAB1     <---------DEAR3(2)                    --------->YAB1 -------RAP2.6(2) <----------DOF2        <---------DEAR3(1)                    ----------->GT1------- ----->RAP2.6(3)------->TEIL         --------->MYB59                           <---------YAB1 <------   gcggctatgtaatgaatgcactttataaaaatgtgaagtaaggtcggtttttgtgtactaaaaacgatatcgttttatgagatgataattatcgcctata  541600                                        <------------CBF                                       >>>>>>>>>EIN3                                          <------                                     <<<<<<<<<<<<<<<<<LFY                             --------->HSFB2a(2)                                    <---------ARR14(2)                               ------>ZmHOX2a(2)                           <---------TOE1(2)                                        <------ZmHOX2a(2)                           --------->LBD16                      ----------------->AGL3<---------HSFB2a(2)                          --------->HSFB2a(2)                ------->GAMYB         --------->AGP1                          <---------HSFB2a(2)               --------->MYB46(3)     --------->ARR11(3)           --------->AHL20(2)<------ZmHOX2a(1)            <-----------GT1          <---------AGP1     ----------->GT1      <-----------RAV1(2)    <------------CBF            --------->ATHB12 ------- -->ARR14(2)              <---------LBD16    --------->PCF2<---------At5g28300     <---------ARR11(3) ---ARR14(2)<---------AHL20(2)      <---------ZAT14       --------->MYB52(1)<---------YAB1  ---------   ttctatggagttatttaatgggctagtcccaggaagagtatacattgggcccattggttttaacggcccattttaagtatgattagatctagaccgtcca  541700                                                                      --------->DEAR3(1)       ------>ZmHOX2a(2)                                      --------->HSFB2a(2)      <------ZmHOX2a(2)          <----------DOF2              --------->LBD16      --------->GLK1(1)     ---------->DOF2                  <---------LBD16     <---------ARR11(3)--------->AHL20(2)                    --------->LBD16     --------->ARR11(3)<---------AHL20(2)                   ----------->RAV1(2) -----------AGL1      *TSS <---------AHL20(2)           <---------ANAC58            <-----------GT1 ---------->AGL1 --------->TOE1(3)                      <---------ANAC58     <---------LBD16<-------- >ORA47(1)       --------->TOE2(3)      --------->REM1(1) ------>NtERF2    --------->ARR11(3) <------   aaatagggatctcaaaaaaccctaaatatttaaagctttccttcaccagcattgtattgcctccctggaacaccgaagctctggattaacctattttcac  541800                            --------->ANAC58                            --------->ANAC58                                           <-----------RAV1(1)      --------->ARR14(2)   <---------ZAT18                                     <---------ANAC58   <---------TOE1(3)   --------------->AtSPL8                                  <---------ANAC58   <---------TOE2(3)   <---------------AtSPL3                           --------->ANAC58   <---------TOE1(2)   <---------------AtSPL8                           --------->ANAC58 ---GT1<-------TEIL<---------YAB1  ---------->DOF2       <----------DOF2--------->ANAC46 -----GT1    ---------->ID1--------->SPL7    <----------DOF2----------->GT1--------->CCA1(2)   cttctaaggttcttcgtcgttcttattggtacgcttcaaaagccttcctttctctgtagctttagttaaaatccaagaaatgggtgtttttgttggaggc  541900                                                           <---------ZAT6                                                      <----------DOF2                                              <---------AHL20(1)           --------->LBD16                                              --------->AHL20(1)         <---------LBD16                                              --------->AHL20(2)        <---------ZAT14            <-                                              <---------ARR11(3)  --------->ALFIN1             ------                                              --------->ARR11(3)  <---------REM1(1)           <------            <---------YAB1                    <---------AHL20(2)<---------ANAC46  <---------YAB1 ----   taatcgacgtttttgtaattgctctctctctcagtttttttggagaaatatattagctttagtgagaggtgtagttcagggattacaattagtttgatct  542000            --------->ATHB12                                            <---------YAB1           <---------YAB1                                          ------->TEIL           --------->ICU4                                        <---------ZAT18<-------GAMYB ---------DOF2                                             <----------DOF2     ----------->GT1 >ZmHOX2a(2)<---------ICU4         ------>ZmHOX2a(1)      <---------ANAC58     <---------MYB46(3) ---At4g35610           --------->YAB1  ----------->GT1   <---------ANAC58 <---------TOE2(3) ----->At4g35610        --------->AHL20(2)       --------->At4g35610 --------->ICU4              ----   gcttaattttgtgatcattggactaataaaaaacttcctgtagggtttataagctctcttgctttgatgcacttattaatgtggttaatgtctcttattt  542100                                                                               <---------YAB1                                                                             <---------ICU4                                           <---------TOE2(3)                 --------->YAB1                                       <---------At4g35610                  --------->ICU4                              --------->YAB1                             --------->AHL20(2)          <-------GAMYB     --------->ANAC58                        <---------ZAT18         <---------MYB46(3) --------->ANAC58   --------->MYB52(1)<---------ANAC46----------->GT1 ------->GT1       <---------ANAC46    --------->At4g35610    <---------MYB52(1)--------->ZAT6   ggaaaattagatggttgagttgcatatagctcgcataatttagctgaggtaactgagtatttcggttttgtgaacttaattatcagtaaattgggaattt  542200  Previous    Next  AGI:  At3g02555.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G16110.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96883.1) Range:  from: 539646    to: 541510    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g02560.1    Description:  40S ribosomal protein S7 (RPS7B). Identical to 40S ribosomal protein S7-2 (RPS7B) [Arabidopsis Thaliana] (GB:Q9M885); similar to 40S ribosomal protein S7 (RPS7C) [Arabidopsis thaliana] (TAIR:AT5G16130.1); similar to 40S ribosomal protein S7 (GB:Q9XH45); contains InterPro domain Ribosomal protein S7e; (InterPro:IPR000554) Range:  from: 541722    to: 543392    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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