Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     --------->AHL20(2)                                                   <---------AHL20(2)                                               ----------->GT1                                   ----                    <---------MYB52(2)  --------->At4g35610 <----------DOF2                --------->YAB1 -->GT1---------->DOF2              --------->ATHB12  <---------GLK1(2)      <-----------GT1  -------   aattactaaaaaagatggccaaacaaacccatagacaaagattgctgaattgtttaaattctctttagaaacctccaaattaccacattccacttataag  535900              --------->ANAC58              <---------ANAC55(2)              --------->ANAC58                      --------->ARR14(2)              --------->ANAC46                      <---------ARR14(2)           <------ZmHOX2a(2)                --------->AtMYB61        <---------------AGL15          --------->ARR11(3)                <---------MYB59          --------------->AGL15         <---------At4g35610<---------ARR14(2)------>MYB46(1) --------->HSFB2a(2)    ------>MYB46(1) ----->ARR11(3) ---------->DOF2--------->TOE2(3) --------->AHL20(2) --------->TOE2(3)------>MYB83 -->YAB1 --------->At4g35610--------->ARR14(2)------>MYB83    <---------HSFB2a(2) --------->DEAR3(2)   aactagctctcagatcacgaaagaacagagaaacctctaaaatcgaccaaatcaaatactcgatcgagaaacttaattgagaaaaccgactctaccgaga  536000                                ----------->GT1                                --------->ANAC55(2)                                --------->ANAC58                                <---------ANAC55(2)                                --------->ANAC58                                --------->ANAC55(1)                                --------->ANAC46                               <-------TEIL                             --------->ARR14(2)                                                 <----                             <---------ARR14(2)                                                 =====                         <---------LBD16                                                        -----                         --------->LBD16                       <------ZmHOX2a(1)            <--------                         ------>ZmHOX2a(1)                    ----------->GT1               ---------                  <---------ARR14(2)                         <---------TOE2(3)              <--------                  --------->ARR14(2)                     --------->ANAC58                  <---------ARR14(1)              <---------HSFB2a(2)                   ----------->HVH21                    <---------MYB59              --------->HSFB2a(2)          ------->GAMYB --------->ANAC58              --------->MYB52(1)   gaacaataaactcgatcgagaaacctcctcggatacgtaattcaacagtctcaattgacaagtaaggaaactatctgtagaaattcgcataccgaatcct  536100 -----LBD16              <---------ZAT18 ===================HOX2a_HOX2a                --------->ARR11(3) ->ZmHOX2a(1)            --------->ZAT18       <---------ARR11(3) -ARR14(2)    --------->HSFB2a(2)              --------->ARR14(2)        --------->GLK1(2) >ARR14(2)    <---------HSFB2a(2)             --------->CCA1(1)  --------->DEAR3(1) -ARR11(1)   ------>ZmHOX2a(2)                --------->RVE1(1)<---------At5g28300   ----------->HVH21   cgggttttacttcgatctcgaagtgagtccccttgagagttttcacaaatatcttcatcttctctcaccgtcgaaattctcttcccagtgaccgattact  536200                                     --------->AHL20(1)                                     <---------AHL20(2)                                     <---------AHL20(1)                                     --------->AHL20(2)                               <------NtERF2                              --------->LBD16                              ------>NtERF2                             --------->RAP2.6(2)                             --------->RAP2.3(2)                             --------->ATERF1(2)                             --------->DREB2C(2)                             --------->DEAR3(1)                             <---------ATERF1(2)                             --------->RAP2.3(3)                            --------->ATERF1(1)             <------MYB46(1)                            --------->RAP2.3(1)             <------MYB83                            <---------LBD16                <---------DEAR3(1)                 <------                            --------->ERF1                 --------->MYB46(2)                --------                           <---------ATERF1(1)          <------MYB46(1)                    -------->P                           ------>NtERF2                <------MYB83                       ------>MYB46(1)                           --------->ABI4(1)           --------->MYB111(1)                 ------>MYB83                          --------->DEAR3(1)  ---------->DOF2                             <---------ALFIN1                         --------->MYB46(3)--------->HSFB2a(2)                          <------NtERF2                        <---------At5g28300<---------HSFB2a(2)                  <-----------ARR10                  <---------WOX13(1)<---------AHL20(2) --------->MYB46(2)       --------->ARR14(2)                --------->ATHB12    --------->AHL20(2) --------->MYB59          --------->GLK1(2)               <---------YAB1--------->RRTF1(2)       <--------P                <---------ARR14(2)<--               --------------------->WRI1 <---------LBD16 <--------P           <---------GLK1(2)  <--   caggctaaaatcccgttctgattgatcaccgccggcaaataaattcgggaaagagagtaggtaggcgaagaaggtactacagaatctggcccctaccttt  536300                                                                      <---------RAP2.6(3)                                                                      ------>NtERF2                                                                     --------->RAP2.3(2)                                                                     ================================                                                                     --------->RAP2.6(2)                                                                     --------->ATERF1(2)                                                                     <---------ATERF1(2)                                                                     --------->DEAR3(1)                                                                     --------->RAP2.3(3)                                                                     --------->DREB2C(2)                                                                     --------->ANAC58                                                                     --------->ANAC46                                                                     --------->RRTF1(3)                                                                     --------->RRTF1(2)         -----                                                                     ------->GAMYB              <----                                                                     --------->ANAC58           -----                                                                    --------->MYB46(3)          <----                                                                    --------->ERF1              -----                                                                    --------->RAP2.3(1)         <----                                                                   --------->At4g35610          <----                                                                   <---------ZAT2               -----                                                                   <---------At4g35610         ======                                                                   --------->ZAT2              ------                                                                   <---------ATERF1(1)         <-----                                                                 <---------WRKY12              <-----                                                              --------->O2--------->ICU4       ------                                     <-------MYC3             --------->bZIP60(2)              <-----                                     ------->MYC3             ===============MYC_MYB           <-----                         <---------ALFIN1<---------ANAC46     <---------ZAT2                   ------                      <------ZmHOX2a(2)  <---------ANAC58     --------->TGA1a                  ------          --------->ARR11(3)         <-------MYC2           <-----------RAV1(2)           --------->ANAC46 ----DOF2<---------GLK1(1)    --------->LBD16   <----------DOF2<-----------HVH21    --------->AHL20(2) ->TOE2(3)<---------ARR11(3) --------->ANAC46   ========================bZIP_DOF   --------->YAB1 -------ANAC58       <-----------HVH21   <---------ANAC58 ------>NtERF2<------NtERF2<---------AHL20(2) -------ANAC58 <---------ALFIN1      ------->MYC2*TSS     <-----------HVH21     ------>ZmHOX2a(1)   gcgttccctcgatatctccactggatcacacccgaagcacatggcttgtgctttcaactctgccaggtcagccgccattatcctattaaaatatgccacg  536400     ------------>CBF    <-----------GT1 <------------CBF ====MYC_MYB -->MYC3 ---PIF5 -->MYC2 ---MYC3 -->MYC4 ---MYC2 ---MYC4 -->PIF5                                                            <---------ARR14(2) ======================================bZIP_DOF                     --------->ARR14(2) --->O2                                                     --------->ATHB12 ----O2                                                     --------->YAB1                 --------->AHL20(2) ----TGA1a                                              <---------AHL20(2)                 <---------AHL20(2) --->TGA1a                  ---------->DOF2       <---------ANAC55(2)            <---------ICU4 ----PIF3(3)            <---------ANAC46     --------->RVE1(1)  <---------At4g35610       --------->AHL20(2) ----ANAC46  --------->TOE1(3)   --------->ARR14(2)    <---------AHL20(2)       --------->ICU4 --->bZIP60(2)------>ZmHOX2a(1)  <---------ARR14(2)    --------->AHL20(2)      <---------AHL20(1)  <- --->PIF3(3) --------->TOE2(3)  <------ZmHOX2a(1) --------->ANAC55(2)         --------->YAB1---------   tggtattgacaatttccttaatacagtcgtgaaaggataggcccaaaatatcacttattaaatgatagcagataggcccataatatttagaaataaatca  536500                     <----------DOF2                    <---------ANAC58                                                        ---------              --------->AHL20(1)              <---------ARR11(3)                            <--------              <---------AHL20(2)              <-----------ARR10                     <---------------AtSPL8          <---------AHL20(2) --------->TOE2(3)--------->ARR11(3)                --------->AHL20(2)   <----------DOF2  <---------ANAC58         --------->RVE1(1)                 --------->AHL20(2) ---------DOF2--------->AHL20(2)       ----------->GT1                         <---------AHL20(2) >WOX13(1)--------->AHL20(2)----------->GT1  --------->CCA1(1)    <---------AHL20(2)--------------->AtSPL8   actttctttttataaattttttgcttttattcgttaaaaaatagataatatctcagccaattcttgaattaatctctgtaaataattttgtacatatact  536600                                                                     <---------LBD16                                                                    <---------At5g28300                                                                    <---------DOF5.7(2)                                                                    --------->MYB52(1)                                                                   <-----------GT1                                                               --------->DAG2                                                              ---------->DOF2                                                         --------->AHL20(2)                     -----        <-----------------AG                             <---------AHL20(2)              --------->At4g35610        <-----------------AGL1                      --------->AHL20(1)                   <---------YAB1   <----------DOF2            ---------->DOF2       <---------AHL20(1)                <------ZmHOX2a(2) >ARR14(2)                 --------->TOE2(3)        <---------ARR11(3)               --------->ARR11(3) -ARR14(2)        ---------->DOF2  ----------->GT1  --------->AHL20(2)               <---------ARR11(3)   ctattcttttgtcacaaatggaaagtgaacattaaagggggaaatagagaactatatattaaaaaaaagttaccggctcgacttgaagatcatcagagcc  536700                                                                                             <-------PIF4                                                                                             ------->MYC2                                                                                             <-------PIF5                                                                                             ------->MYC4                                                                                             <-------MYC4                                                                                             <-------MYC2                                                                                             ------->PIF5                                                                                     ----------->RAV1(2)                                                                                    ------>ZmHOX2a(1)                                                                           ------->MYC3      ------->MYC3                                                                           <-------PIF4     <--------                                                                           <-------MYC4     <--------                                                                           ------->MYC4     ---------                                                                           ------->PIF5     <--------                                                                           <-------PIF5     ---------                                                                           ------->PIF4     ---------                                                                           <-------MYC3    ----------                                                                           <-------MYC2    <---------                   <------NtERF2                --------->ZAT2             ------->MYC2----------->HVH21           ----------->HVH21                    --------->At4g35610       --------->ANAC46<----------         <---------At4g35610                    <---------At4g35610       --------->ANAC55(2)<-------MYC3         --------->At4g35610                    <---------ZAT2          <------------OsbHLH66------->PIF4 ---->DEAR3(1)    ------>NtERF2     ----------->GT1          --------->At4g35610    =================   gagccgaatagagctgatgggggcaaaacttctgagtatagctaaaacggagcttagagcataagctcagtcttacacgtgctctccttctgacacgtgc  536800  Previous    Next  AGI:  At3g02540.1    Description:  RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3); damaged DNA binding. Identical to Putative DNA repair protein RAD23-3 (RAD23-3) [Arabidopsis Thaliana] (GB:Q84L31;GB:Q9M887); similar to DNA repair protein RAD23, putative [Arabidopsis thaliana] (TAIR:AT5G38470.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96960.1); contains InterPro domain Heat shock chaperonin-binding (InterPro:IPR006636); contains InterPro domain UV excision repair protein Rad23; (InterPro:IPR004806); contains InterPro domain Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); contains InterPro domain Ubiquitin; ( Range:  from: 532815    to: 536349    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g02550.1    Description:  LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41). Identical to LOB domain-containing protein 41 (LBD41) [Arabidopsis Thaliana] (GB:Q9M886;GB:Q8LDD8); similar to LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40) [Arabidopsis thaliana] (TAIR:AT1G67100.1); similar to seed specific protein Bn15D17A [Brassica napus] (GB:AAP37970.1); contains InterPro domain Lateral organ boundaries, LOB (InterPro:IPR004883); contains InterPro domain Protein ASYMMETRIC LEAVES (InterPro:IPR017414) Range:  from: 536512    to: 538005    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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