Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                <------MYB46(1)                                                              <------MYB83                                                             --------->MYB59                                                           --------->ARR14(1)               <--------                                                          --------->ARR11(3)        <---------ZAT18                                                          <---------ARR14(2)        <-------TEIL  <--                                                      ---------->DOF2               --------->ZAT18 -                                                 --------->ZAT18                --------------->AtSPL8                                             <---------ICU4--------->CCA1(2)    <---------------AtSPL8                                          --------->ATHB12--------->ARR11(1)    --------->DAG2    <--    <-----------GT1                    --------->GLK1(1)  --------->ARR14(2)   ---------->DOF2 ------ ------DOF2      <----------DOF2<---------ZAT14  <---------ZAT18          <---------ANAC46  ---------   ttgttttttctctattgacctttaatccaaagagtttacagaattcattagtactctaaagatttggtattttgtttcttataaagtacacattatgtat  516000                                                         --------->AtLEC2                                                        --------->TOE2(2)                                                       --------->YAB1                                                       <---------ICU4                                                      <---------ATHB12                                                  --------->AHL20(2)                                               <---------AHL20(2)                                               --------->AHL20(2)                                   <                                               <---------AHL20(1)                                  <-                                               --------->AHL20(1)                                  --   --------->MYB52(1)                         --------->AHL20(2)                                   <-   --------->ARR14(2)                         <---------AHL20(2)                                   <-   <---------ARR14(2)                      --------->AHL20(2)                                      -- -ANAC55(2)                                <---------AHL20(2)                                    ---- -------AHL20(2)                          --------->ICU4--------->TOE1(2)                     <------ -------->ANAC55(2)                       --------->AHL20(2)    ---------->DOF2               <------ ---------GT1                        ----------->GT1--------->WOX13(1)                     <---------ATHB12 ->TEIL                  <-------TEIL--------->YAB1<---------AHL20(2)     <---------ICU4   --------->ICU4 >ANAC55(2)   --------->AHL20(2)  <---------CCA1(2)--------->AHL20(2)     --------->YAB1  <---------TOE2(3)   ttacatatcggacaaaataaacacatatacatatgtgtatcgtaataaataaattaatcatgcgaacaaaggagcatcatcacacatcttctaatgatgt  516100        <----------DOF2       <---------DAG2   ------>ZmHOX2a(1)                                                                    --------->ARR14(2) ------>ZmHOX2a(2)                                                                      <---------ARR14(2) ------ZmHOX2a(2)                                                                      <---------CCA1(2) --------GLK1(2)              --------->LBD16                                        <---------------AGL15 ------->ARR11(3)            --------->HSFB2a(2)                                    ----------------- --------ARR11(3)      <---------CCA1(1)                                            ----------------- --------ARR14(2)      <---------RVE1(1)                                         <----------DOF2 ------->ARR14(2)     <---------ARR11(3)                                        <---------ANAC58 ------->ARR10        --------->ARR11(3)  <----------DOF2  <----------DOF2      <---------ANAC58 ---REM1(1)     <----------DOF2--------->LBD16   <---------GLK1(1)         --------->ICU4        <--- ---ANAC46   ---------->ID1 <---------LBD16      --------->GLK1(1)         <---------YAB1        <---   agatcctccccttttgttctttcagatatttcccgagtcttctactttgggatttcttctcctttctcttcaagctcatgatgctttccatatccagttg  516200                                       --------->GLK1(1)                                   ----------->GT1                           <--------ATHB1                           -------->ATHB1                           <------------ATHB5                               ------->TEIL                           --------->ATHB12                                 <---------ARR14(2)                           <---------ICU4                    <----------DOF2--------->ARR14(2) >AGL2                     --------->YAB1            <------MYB83--------->ZAT6 >AG                      <---------ATHB12           <------MYB46(1)  --------->ANAC46 ------ANAC58             --------->ICU4        --------->DAG2   --------->ANAC46 ------ANAC58             <---------YAB1       ---------->DOF2 <-----------GT1   --------->LBD16    <   tgtccctaagaaaccagttgatataacaatgattgtatcggaaatactaaaaagttggtgagactttacaccacgacgaatccctcgaaaaaacttggtc  516300                           --------->ARR11(3)                           <---------ARR11(3)                  --------->HSFC1(2)                  <---------HSFB2a(1)                  --------->HSFB2a(1)                  <---------HSFC1(2)                 --------->ARR14(2)                 <---------KAN4(2)                <---------GLK1(2)     --------->AHL20(2)                               --------->ANAC55(2)               <------ZmHOX2a(1)<-----------GT1                             <----------DOF2   <------           --------->ZAT2 --------->YAB1              --------->ARR11(3) <---------ARR11(3)  --------           <---------ZAT2<---------YAB1           ----------->GT1*TSS    --------->ARR11(3) <-------- ---------GLK1(2)--------->GLK1(2)    <---------AHL20(2)         --------->YAB1        <---------ANAC55(2)   tagattgtttccgagcaggaatcttctatgatattaactattaattaagagagtgtgatattgtgaagaataagagaactttggaagataagtgatttaa  516400     <---------ARR14(2)     --------->ARR14(2)                                                                 >>>>>>>>>EIN3     <---------ARR11(3)                                                       -------->HAHB4     --------->ARR11(3)                                                       --------->YAB1   ----------->ARR10                                                       --------->YAB1 ---AHL20(2)             <---------YAB1                                   --------->AHL20(2) ->AHL20(2)             <-----------TBP <------------CBF --------->At5g28300 <---------YAB1      ---- --DOF2 --------->ANAC55(2)           --------->ARR11(3)----------->GT1   <---------AHL20(2)     ----   tggagaagatacttgttcgagtgagtttttatagggagaagttattgtctgcattctacagtaacttaataaacaattaataataggtatacattggacc  516500                                                                                    ------>MYB46(1)                                                                                    ------>MYB83                                                                                  <---------MYB111(2)                                                                                  <---------MYB46(2)                                                                              --------->TGA2(2)                                                                             <-----------HVH21                                                                             <-----------TGA1                                                                            --------->TGA1a                                                                            --------->ANAC58                                                                            --------->O2                                                                            --------->ANAC46                                                       --------->ATHB12     <---------TGA1a                                <---------AHL20(1)    <---------YAB1        --------->ANAC55(1)                                --------->AHL20(1)  --------->YAB1          --------->ANAC55(2)                                <---------AHL20(2) <---------YAB1           <---------ANAC55(2)                            -------->HAHB4       <---------ICU4             <---------O2                            <---------ICU4       --------->YAB1             <---------bZIP60(1)                            --------->YAB1      --------->ICU4              =========================                           <---------ATHB12     --------->AHL20(2)          --------->TGA2(1)                 -------->P--------->ICU4       <---------ATHB51            --------->bZIP60(2)                <-----------GT1--------->AHL20(2)-------->ATHB1             --------->ANAC58        --------->ZAT6 <---------AHL20(2)       <---------AHL20(2)          <---------TGA2(1)    <---------AHL20(2) --------->AHL20(2)--------->HSFB2a(2)                --------->bZIP60(1) ----->TOE1(3)  --------->WOX13(1)       <---------HSFB2a(2)               <-----------STF1   <------ ----->TOE2(3)<---------ATHB12<---------YAB1<------ZmHOX2a(1)  ----------------------->TaNAC69(2)  --   cttaaatttatctctaatcaaccatataaatgattatattgttcgaggaaattattatcatttgtatgtggtttagtcacgtcaccaaactctatataac  516600                                                                                                    <                                        <-------GAMYB                                           -----                      <-------TEIL      <---------ANAC58                                        <----                     --------->CCA1(2)  <---------ANAC58                                        <----                ---------->DOF2        <---------MYB46(3)                                  <---------ICU4              ------>MYB83             <------MYB46(1)                                     <--------HAHB4             ----------->RAV1(1)       <------MYB83                                        --------->YAB1            --------->AtMYB61   <------NtERF2                                             <---------YAB1      <---------ARR14(2)      <---------RAP2.6(2)                                         --------->ICU4      --------->ARR14(2)   <-----------RAV1(1)                              --------->ANAC55(2)<----- ==========================bZIP_DOF <---------MYB52(1)      <-----------GT1 <---------ANAC55(2)------ -----GT1  --------->MYB46(3) --------->ETT(1)          <----------DOF2------>ZmHOX2a(1)  <---------ATHB12 --------->GT1------>MYB46(1)--------->RAP2.6(3)    <---------GLK1(2)--------->YAB1---------->DOF2  -   aatgtgaaaatccaccaacaaagatacatttgtcggccatttggttgcataacatattcttttatccactatcctaataagtgataaaagtaatcatttt  516700                                                                <---------RAP2.6(2)                                                               --------->RAP2.6(3)     <---------AHL20(2)                                        <---------At5g28300    --------->AHL20(2)                                        <-----------GT1    --------->YAB1                                            <---------ICU4   <---------------AGL15                                  <---------AHL20(2) ---------AHL20(2)                                       --------->AHL20(2) ---->AHL20(2)                 --------->ANAC58          --------->AHL20(1)                 <-------- -----AHL20(2)                 --------->ANAC58          <---------AHL20(2)            <----------DOF2 -----YAB1----------->GT1      --------->ANAC46          <---------AHL20(1)            <---------DAG2 ----AHL20(2)   <---------AHL20(2)             --------->ARR11(3)                   <-----------GT1-- --->AHL20(2)  --------->AHL20(2)          ---------->DOF2--------->AHL20(2) --------->CCA1(2)   <--- -------->AHL20(2)           ---------->DOF2   <---------ARR11(3)         <---------TOE2(3) <--------   aattaataaaaatggtattatatatcgaactaaaagcaagtcttgtaaagttcttcaaatttaattacggcctcttaagatttgagtaactttttcgttc  516800                          --------->ZAT18                            <---------ICU4                          --------->ZAT14        <------MYB83     ------>MYB83                          <---------ZAT18        <------MYB46(1)  ------>MYB46(1)         --------->AHL20(1)                      <---------MYB46(3)  <---------------AtSPL8         <---------AHL20(1)                  <-----------RAV1(1)<---------MYB59 -ANAC58 --------->ARR11(3)             <---------AHL20(2)     ----------------->AGL1 -------->DOF2            <---------ZAT14  <----------DOF2   <---------WRKY18(1) ------HSFB2a(2)  <---------WOX13(1)<---------AHL20(2)      --------->WRKY38(1) -ANAC58 <---------AHL20(2)         --------->AHL20(2)      --------->WRKY12   gaaaagactaatattttgggattgatagtatactatatttattttctttgttggtgaacacattgaccaaattagtacaactagagccattttgcttcaa  516900  Previous    Next  AGI:  At3g02490.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G15980.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96873.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 513532    to: 515932    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g02493.1    Description:  DVL2/RTFL19 (ROTUNDIFOLIA LIKE 19). similar to DVL1/RTFL18 (DEVIL1) [Arabidopsis thaliana] (TAIR:AT5G16023.1); similar to DVL protein [Cleome spinosa] (GB:ABD96875.1); contains InterPro domain DVL (InterPro:IPR012552) Range:  from: 515951    to: 516365    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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