Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            --------->MYB46(3)                                                                                        --------->MYB52(1)                                <---------YAB1           <------MYB46(1)              <---------MYB52(2)                              --------->YAB1             <------MYB83         ----------->GT1                            --------->ARR11(3)         --------->ALFIN1      --------->DAG2                       --------->AHL20(2)            --------->ALFIN1       ---------->DOF2      ----   ----------->GT1  <----------DOF2------->TEIL --------->DAG2           --------->YAB1------->GAMYB >TOE2(3)  ---------->DOF2  <---------ARR11(3) ---------->DOF2   <---------ZAT6    --------->MYB46(3)   ctatctagttaataaaagtatgctttttaatatcatgaatgtggaagaaaaaagggagtgggtttcagtgttcaagtataaagtaacaactaacaacttc  513100                                                                                                 <---                                                                                                 ----                                                                                                -----                       --------->ICU4                                                         <------                ---------->DOF2          --------->ARR11(3)                                  --------               --------->YAB1            <---------ARR11(3)                      --------->ARR11(3)              <---------ATHB12          <---------CCA1(2)         <---------AHL20(2)         --------          <------ZmHOX2a(2)          ------->TEIL     --------->MYB52(2)         <---------ARR11(3) ------>DOF2--------->WOX13(1)     <<<<<<<<<EIN3  <---------ZAT6 --------->AHL20(2)         <--------   aaagaatattagatcaatgaaagtaagtatcaaacaatgtatatatcttatagtgttagtttggaaattttatccaaaatgaagataatttggaacgtta  513200 ------At4g35610 ----->At4g35610                         --------->AHL20(2) ---->MYB52(2)               --------->HSFB2a(1)                           <---------WOX13(1) ---MYB52(1)                 <---------HSFC1(2)                          --------->ATHB12 ->TOE2(3)                   <---------HSFB2a(1)                        --------->ICU4 ->TOE1(3)   ------>ZmHOX2a(1)--------->TOE1(3) --------->ATHB12        <---------YAB1 -HSFB2a(1) --------->TOE2(3)--------->HSFC1(2)<---------YAB1 <---------ZAT6    <------ZmHOX2a(2)   gatgaagttttgttcctcaaataactttggaaccttcagttttttatatatcattggaaatttagtgagaaaacatgattggatcaattctcttactaaa  513300                         <---------WOX13(1)                       --------->ATHB12                   -------->ATHB1                   --------->ATHB12                   --------->ATHB51                                       <---------AHL20(2)                  <---------YAB1                                      ----------->GT1              <-                  <---------ATHB51                                   ----------->GT1      --------->AHL20(2)                  --------->ICU4                                 --------->ALFIN1         <---------AHL20(2)               <------ZmHOX2a(1)                        ------>ZmHOX2a(1)--------->AHL20(2)   <------             <---------TOE2(3)                         <---------MYB59<------ZmHOX2a(1)--------->AHL20(2)             --------->ANAC46      ---------->DOF2  <-----------GT1 <---------ANAC46  --------->AHL20(2)   acatttcaagagtataaggaattattgattgagcacaaaaagacatggtcatattttcctaatcgctgtggaggataaaattatctaaataaaaaaatgt  513400                                                                   <---------WRKY12                                                                 <-----------HVH21            <---------ICU4                                <---------ANAC58         --------->YAB1         ----------->HVH21         <---------ANAC58        ----------->GT1       <------ZmHOX2a(1)       --------->AtMYB61 --------ANAC46      --------->DAG2  --------->At4g35610------>MYB46(1)                     <-------- -----RAV1(1)       ---------->DOF2  <---------At4g35610------>MYB83             ---------->DOF2   --   tgtggctaaaatgaaaattacaaaaagttggaggatgacagcttaaaaatactcgaccttccgtcttggtcagaggtttagtctaaagccctaaacattt  513500                                                                                            <--------                    <---------At4g35610                                          <---------ZAT6              <------------CBF                                                   <-----------RAV1(1)           ------>NtERF2             --------->YAB1                 --------->ANAC46       <---------At4g35610 -ICU4    --------->ANAC46      *TSS ----------->GT1<---------DAG2  --------->ANAC58   <---------REM1(1) ---->ZmHOX2a(1)    --------->At4g35610             <----------DOF2 --------->ANAC58<---------MYB46(3)   cctctctctcttgcgccattgctgctccatcgttcccattcgtaaaaatccaaactttttgttcaaaatcaagccaaactctagtgttgttgtagcttag  513600                                            --------->At4g35610                                            <---------ZAT2                                            <---------At4g35610                                        <---------HSFB2a(2)                                        --------->HSFB2a(2)                  <---------YAB1       <---------LBD16              ----------->GT1------>ZmHOX2a(2)      --------->SPL7                           --------             <---------TOE2(3)     <----------DOF2 <---------MYB52(1)                       ---------         <------ZmHOX2a(1)  <------ZmHOX2a(2)  <---------At5g28300                         <---------         ==========================HOX2a_HOX2a --------->MYB52(1)                       --------->ARR14(2)       <---------TOE1(3) <---------ANAC58   --------->ZAT2             <----------DOF2  <---------ARR14(2)       <---------TOE2(3) <---------ANAC58--------->LBD16     --------->TOE1(1)        <---------MYB46(3) -ANAC46 ===========================HOX2a_HOX2a-------->P   ------>ZmHOX2a(1)       <---------LBD16   atagacattaaggatgaggtatcaatggcgatcgcttcttttccggagctaccgttcgtctcctcgtccatttctttctcatcactcgcggttccaggta  513700                                               <---------ANAC58                                               <---------ANAC58                                       --------->HSFB2a(1)                        --------->ANAC58                                      ------->TEIL                                ------>ZmHOX2a(2)                               ------>ZmHOX2a(1)                                 <------ZmHOX2a(2)                          <----------DOF2      <---------ANAC46               <---------ANAC58      <                 <----------DOF2   --------->ANAC46           >>>>>>>>>SUP    <---------ANAC58<------                ======================HOX2a_HOX2a --------->ZAT18         <---------ANAC58    ------- ->ANAC46       ------>ZmHOX2a(2)  --------->ANAC58 ----------->RAV1(1)   <---------ANAC58 <---------ANAC58 >LBD16       <---------ARR11(3)   <---------MYB52(2)  ---------->DOF2 <-----------GT1     <---------ANAC58 --RAV1(2)    --------->ARR11(3)   --------->ANAC58<----------ID1  <----------DOF2--------->ANAC58 <-   atctccaattcgactcgatctttctcttctttcctccacgaacgttttggagtgcaacaaagacagtgtctttttgccttgcgatcgccattggcgagct  513800                 --------->At4g35610                 <---------At4g35610       <------NtERF2                                    <-------GAMYB      ------>NtERF2                                     <---------ZAT14      <---------ATERF1(1)                      <---------At4g35610     --------->DEAR3(1)                        --------->At4g35610     ----------->HVH21                         ----------->RAV1(2)    --------->DEAR3(2)                         --------->ZAT2   --------->At4g35610                         <---------ZAT2                               <------ZmHOX2a(1)   <---------At4g35610                        ------>ZmHOX2a(1)          <-----------GT1   --------->ICU4 ---------MYB52(1)                      --------->HSFC1(2)        <---------TOE2(3)       <---------TOE2(3) ---ZAT2   <----------DOF2              <---------HSFB2a(1)    <---------WOX13(1)     --------->YAB1 -->ZAT2   <---------DAG2               --------->HSFB2a(1)  --------->ATHB12     --------->ATHB12 ----------HVH21 ----------->RAV1(2)    <---------HSFC1(2)  <---------YAB1 <---------At4g35610   ctgttagccgacgcttttcatctgagtctgcgatagaagagaaacttcctgctgagactgttgtgattgatgtttttagcagattgaatggtaaggatga  513900                                                                                               <-----                                                                                               <-----                                                                                          --------->LBD16                                                                                          <---------LBD16                                                                                         <---------ANAC58              <---------ARR14(2)                                                         <---------LBD16              --------->ARR14(2)                                                         <---------ANAC58         --------->ZAT2                                                                  <---------ANAC46         --------->At4g35610                                                            <---------LBD16    ---------->DOF2                                                                 <-----------RAV1(1)  <---------YAB1                                                                    <---------REM1(1)  <---------ANAC55(2)        <---------YAB1                                      ----------->HVH21  --------->ANAC58         ----------->GT1             <---------GLK1(1)    --------->ANAC58  <------  --------->ANAC58    --------->YAB1          <---------YAB1                --------->ANAC58 <-------   gattacgaaagagctggattcgaatgatgttgtgattagccatgaattagcattgagagttctgagggaacttgaatcaagccctgatgttgcggggagg  514000  Previous    Next  AGI:  At3g02480.1    Description:  ABA-responsive protein-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G38760.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96872.1); contains domain PTHR23241:SF11 (PTHR23241:SF11); contains domain PTHR23241 (PTHR23241) Range:  from: 512319    to: 513034    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g02490.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G15980.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96873.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 513532    to: 515932    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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