Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            <-------MYC3                                                                                          <-------MYC4                                                                             <---------ARR14(2)                                                                             --------->ARR14(2)                                                                             <---------ARR11(1)                                                                            <---------CCA1(2)                                                                          --------->O2    -------->ABF1                                                                          --------->ANAC58<-------MYC2                                                                          --------->ANAC46------->MYC3                                                                          <---------ANAC55(2)                                                                          --------->ANAC55(2)                                                                          --------->ANAC55(1)                             --------->ANAC58                             --------->ANAC58------->MYC2                             --------->ANAC46                             =========================bZIP_bZIP                             --------->ANAC58                             --------->TGA1a ------->MYC4                          <---------ARR14(2)                              <---------TGA1a<---------TGA1a                       --------->ANAC58      --------->ANAC58             <---------O2   --------->O2                       --------->ANAC46   <---------ZAT2                <---------ALFIN1 <---------O2                       --------->ANAC58   <---------At4g35610       ------->GAMYB        --------->TGA1a                     <---------ALFIN1     --------->ZAT2            ================MYC_MYB      <---                     --------->MYB52(1)   --------->At4g35610       ===============================MYC_MYB                    ----------->HVH21----------->HVH21             --------->ANAC46      --------->ANAC55(2)                    <------NtERF2  <---------ANAC58           <----------DOF2------->TEIL<---------ANAC55(2)                  <---------TCP15(1)<-----------HVH21         =====================================bZIP_DOF           <----------DOF2--------->ARR14(2) --------->ANAC58 ======================bZIP_DOF   ------ <---------GLK1(2)--------->PCF2   <---------ANAC58         --------->At4g35610          ============   atagaatttgattcttttaggccccacggctacgctaccgtgacagctcgcctcgagttatccgcttcaacggcacacgtatcttctaaacacgtgtcaa  508700                 <---------ANAC58           <---------YAB1         >>>>>>>>>GT-1                                       <---------ARR11(3)      <---------MYB46(3)                                     --------->ARR11(3)      ----------->GT1        <---------CCA1(2)           ---------->DOF2      <------MYB83  --------->REM1(2)                 --------->LBD16      <------MYB46(1)<--------P                      --------->ANAC58          ---------->DOF2    <---------WOX13(1)     <---------ALFIN1          <---------HSFB2a(2)    --------->YAB1  --------->ATHB12 --------->ALFIN1                  <---------ANAC55(2)  --------->AHL20(2) <---------YAB1  <---------ANAC58                    --------->ANAC58     --------->AHL20(1) ------ATHB12    <---------ANAC46                    <---------ANAC46    --------->YAB1 --->WOX13(1)    <---------ANAC55(1)                <---------LBD16    --------->AHL20(2) =============================MYC_MYB        <-----------RAV1(1) ----------->GT1   <----------ID1   -   tctttgattggttaatatagcgtgttggcccatctctgttttatattttgttgttccgcaaaagataatgtcaaaaaataataaagaaacaaatctctaa  508800                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                                                                                              -------                                --------->ANAC58                                             <-------                    ------>NtERF2                                                            <-------                  <---------RAP2.3(2)                                                        --------                  <---------DEAR3(1)                                                         <-------      --------->AHL20(2)       --------->DAG2                                                <-------      <---------ICU4<------NtERF2                                                            --------     <---------AHL20(2)       ---------->DOF2                                                <-------     --------->AHL20(2)   <----------ID1                                                   ------->TEIL    <---------AHL20(1) ---------->DOF2       <---------YAB1                       <---------At4g35610   --------->YAB1<---------LBD16--------->ANAC58    --------->ALFIN1              <---------GLK1(1) <---------AHL20(2)<---------RAP2.3(1)      --------->AHL20(2)             <------ZmHOX2a(1) -------- --------->AHL20(2)--------->LBD16      ----------->GT1               <-----------HVH21 --------->ANAC58 -------->AHL20(2)<---------ANAC46   <---------ARR14(2)            --------->At4g35610  --------->ANAC58   aattaaaataatttctacttgcggcgaaaggaaaaagcaaatttgttaaaatagttggggctatttatctgcggtcaggaatggagatgctcgcacctac  508900      --------->ANAC58                              --------->At5g28300 >MYB83--------->TOE2(3)                           ----------->GT1 -->P --------->ANAC58                            --------->ANAC58 >MYB46(1)--------->ANAC58                        --------->ANAC58 --->MYB52(1)                                    --------->SPL7 -->MYB55(1)                                    <---------ARR14(2) --MYB46(2)                                     --------->ARR14(2)                                 -- --MYB111(2)                                    --------->MYB52(1)                      --------->ANAC58 ->MYB46(3)                                  --------->ANAC46                           --------->ANAC55(2) --MYB55(2)                                  --------->TOE1(1)         --------->MYB46(3)          -- --MYB111(1)             ----------->GT1    <---------LBD16----------->GT1  <-----------RAV1(2)    -- ->AtMYB61--------->ANAC58                 --------->TOE2(2)     --------->YAB1         --------->ANAC46 --MYB52(2)      --------->ATHB12          --------->TOE1(2)    --------->ICU4      <-----------HVH21 ->DEAR3(1) --------->AHL20(2)    ----------->GT1--------->RAP2.6(3) --------->MYB52(1) --------->ANAC58   cgattccaacgtaagtaaatggttgaagggtaatttgggtaaaaacctcggaacggcaaattggaaataatcaacggctcagatagcttcacgcgatata  509000                     --------->ANAC46                     --------->ANAC58                     <---------ANAC55(2)                                                           <-                     --------->ANAC55(2)                                                       ------            ----------->GT1    >>>>>>>GRF7                                                     ------            <----------ID1  <-----------HVH21                                                 -------       --------->CCA1(2) <------------CBF                                                  --------->ANAC58    <---------TOE1(3)--------->ANAC55(1)                                             ------>ZmHOX2a(1)    <---------TOE2(3)--------->ANAC58                    ---------->DOF2       <----------DOF2*TSS--- ------->ANAC58     <-------TEIL                      ----------->TBP      <----------DOF2 --------->ANAC58 ------->ANAC58   <---------ARR14(2)       --------->TOE2(3)           <-----------GT1     <---------MYB52(2) ------->ANAC46   --------->ARR14(2)      --------->ZAT6<---------AHL20(2)<---------DAG2------>ZmHOX2a(1)   aacgctaaggtataaggtcaaatacgtaattgtcagggagcataaccctagtacttatataaaggcactctttctacctttcttttcctcctcacgaacg  509100                        *TSS                     ------>MYB46(1)                     ------>MYB83                                                  <----------DOF2             <--------HAHB4                                                       <xxxxxxxxxxxxxxxxxx             <---------ICU4                                                     <---------ANAC46             --------->YAB1                                         <---------HSFB2a(2)             --------->ATHB12                                       --------->HSFC1(1)       <---------ANAC58 --------->YAB1                              <---------HSFC1(1) --------At4g35610 <---------MYB59                                  --------->HSFB2a(2) --->ANAC58 <---------YAB1                                     <----------DOF2 <---------LBD16 --->ANAC58 --------->ICU4                                  <-----------GT1 <---------ANAC58 >TEIL <---------ANAC58<---------ATHB12              <---------TOE2(3)      <---------ANAC58 ---->TEIL--------->REM1(1)                          <---------TOE1(3) ---------->DOF2       --------   catctcattgcttcatcattaccaaatcatcaacttaatcgtttctctcaaatttagggttttctcttttctcgaaagtcttgcggttttctgaatcatc  509200                                                              <-------GAMYB                                                             <---------MYB46(3)                                                           --------->LBD16                                                          <---------ANAC58                                                    ------>ZmHOX2a(2)                                                    =======================HOX2a_HOX2a                                     <---------ARR14(2)   <---------ANAC58                                     --------->ARR14(2)   <---------ANAC46                               ------>ZmHOX2a(2)   <------ZmHOX2a(2)                              --------->CCA1(2)    ========================HOX2a_HOX2a                              <------ZmHOX2a(2)   --------->ARR14(2)                             --------->ARR11(3)   --------->AGP1                             <---------ARR11(3)   <---------AGP1  <---------ANAC46                             <---------ARR14(2)   <---------ARR14(2)            <---------AHL20(2)                             <---------AGP1       <---------ARR11(3)    <---------TOE2(3)                             --------->AGP1       --------->ARR11(3)<------ZmHOX2a(1)        <------- xxxsmallRNA(si3)           <---------CCA1(2)    <---------CCA1(2)<---------TOE1(3)   --------->At5g28300 ->YAB1       <----------DOF2--------->ARR14(2) ----------->ARR10 <---------TOE2(3)  ----------->GT1   tctatctggtgagtctcttttttgaattgtagatctgcgttttctctctgtagatctgttccgtcgttgaggataatgttttttaatcggtgaattctgg  509300                                               --------->HSFC1(1)                                               <---------HSFB2a(2)                       ------>ZmHOX2a(2)                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   --------->ARR11(3)                              <---------LBD16  --------->HSFB2a(2)         ------>ZmHOX2a(2)                            --------->ARR11(3) <---------HSFC1(1)         <------ZmHOX2a(2)                    <---------ANAC58       <---------GLK1(1)             --------->ARR11(3)     <----      <---------TOE2(3)     <---------ARR14(2)<---------LBD16    <---------ICU4        <---------ARR11(3)      <---------TOE1(3)    <---------GLK1(1)<---------ARR14(2)  --------->ICU4   ------>ZmHOX2a(2)   <-----------GT1  <---------ANAC46       --------->GLK1(1)    <---------YAB1 <---------ARR11(3) --LBD16            <---------ANAC58---------->DOF2          <-------TEIL<---------ARR11(3)     -----   gtttttttcaggtttgagggtttcgtttgatatctggagaaaggggtttctggaaacaaggagttcataattcgcgatcttgatctatcgatcttcattt  509400                        --------->bZIP60(1)                        <---------O2                        <---------bZIP60(1)                        --------->O2                        <---------bZIP60(2)                       ----------->STF1                     ----------->HVH21               <---------ZAT2                    <---------WOX13(1)               --------->ZAT2                   <---------TOE1(2)                  --------->ATHB12                   --------->STY1(2)                <---------TOE2(2)         <---------ARR11(3)                          <---------STY1(2)               ------>ZmHOX2a(1)         --------->ARR11(3)                --------->ATHB12                         <---------TOE1(1) -----AHL20(2)   <---------YAB1           <-------TEIL   <------MYB83--------------------->WRI1 ---->AHL20(2)  <---------TOE1(2)    <---------WOX13(1)  <------MYB46(1)    <---------YAB1   atatatgtaagtatctctcacgattgacgtcgttcttcgattgattcattagcctagctaggttagatagacatcgttcttatcgtcctaggttttggta  509500                              <---------WRKY18(1)                          <------MYB46(1)                          <------MYB83                         --------->MYB111(1)                         --------->MYB59         --------->MYB46(3)                         --------->MYB46(2)     ------>MYB46(1)                         <---------AtMYB61      ------>MYB83                  <---------AtLEC2             --------->MYB52(1)                        <---------ANAC58                 >>>>>>>>>>FUS3               --------->TOE1(2)                       <---------WOX13(1)                 >>>>>>>>>>ABI3               --------->TOE2(2)                     --------->ATHB12                 <<<<<<<<<<FUS3              <---------MYB52(2)                    <---------YAB1                --------->ANAC58       --------->TOE1(3)                     <---------ANAC55(1)                --------->ANAC58      ----------->RAV1(2)                    <---------ANAC46    <---------WOX13(1) <---------MYB52(1)    --------->MYB46(3)         ----------->GT1  <---------ANAC58   taagagattgatattcgcatgcatggttaggttgacttatacctgaaaccaacgacttggtttcgatttttgttttgttacatgtatgattgcctattgt  509600  Previous    Next  AGI:  At3g02468.1    Description:  CPuORF9 (Conserved peptide upstream open reading frame 9). similar to CPuORF10 (Conserved peptide upstream open reading frame 10) [Arabidopsis thaliana] (TAIR:AT5G15948.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96953.1); contains InterPro domain S-adenosyl-l-methionine decarboxylase leader peptide (InterPro:IPR012511) Range:  from: 509094    to: 511564    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g02470.1    Description:  SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase. Identical to S-adenosylmethionine decarboxylase proenzyme 1 (SAMDC1) [Arabidopsis Thaliana] (GB:Q96286;GB:Q96531;GB:Q9M893); similar to adenosylmethionine decarboxylase family protein [Arabidopsis thaliana] (TAIR:AT5G15950.2); similar to adenosylmethionine decarboxylase family protein [Arabidopsis thaliana] (TAIR:AT5G15950.1); similar to S-adenosylmethionine decarboxylase [Brassica juncea] (GB:AAS45435.1); contains InterPro domain S-adenosylmethionine decarboxylase, core; (InterPro:IPR016067); contains InterPro domain S-adenosylmethionine decarboxylase; (InterPro:I Range:  from: 509124    to: 511568    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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