Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             ------>MYB83                                           --------->MYB52(1)                                           ------>MYB46(1)                                         <---------MYB46(2)                                         <---------MYB59                                         <---------MYB111(1)                                        --------->ANAC55(2)                                        <---------ANAC55(2)                                    <---------DAG2                                               ----   <---------------AGL15        ----------->HVH21                                                ----   --------------->AGL15      ----------->RAV1(2)                                                ----  <-----------------AGL3    <---------ARR14(2)                                                 ------ -----RAV1(1)      --------->ATHB12 <---------MYB59                         <---------YAB1  ---------   tgccactgtatatagtaaggcttattggcaaaacctgaccttacctaacatatgttttgaaaatttcaacaaaaaactattatttgtttagaatcattca  469500                                                                                        <---------TOE2(3)                                                                                        <---------TOE1(3)                                                                                    -----------------                                                                                <------------CBF                              <---------AHL20(2)                               -------->ATHB1                         --------->ICU4             ------>NtERF2              --------->ATHB12   <---------ARR11(3)    <---------YAB1<---------ANAC58--------->HSFB2a(2)     <---------ICU4 ----->ANAC58         <---------ARR14(2)  <---------WRKY12                    <---------ATHB12 <----- ----->ANAC46         --------->ARR14(2)<-----------HVH21                     <---------YAB1   <----- ----->ANAC58    --------->MYB52(1)    <---------ANAC58<---------HSFB2a(2)  --------->WOX13(1) <----- ---->DOF2     --------->MYB46(3)   ------->TEIL  --------->ATERF1(1)    --------->GLK1(2) <--------- >WOX13(1)     ----------->HVH21 <---------YAB1   <------NtERF2     ---------->DOF2--------->ATHB12   agcaatatgttttgtaaacgaccggttatgattttatgaatgcgtcaatggtggcacctagaagtagaatcaaagaatccatcattgattaagctttgca  469600                                                                                    xxxxxxxxxxxxxxxxx                                                                                 <-------GAMYB                                                                                <------MYB46(1)                                                                                <---------MYB46(3)                                                                                <------MYB83                                                                              <---------MYB52(1)                                                                           <-----------RAV1(2)                                                                     <---------MYB52(1)                                                                    xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                    xxxxxxxxxxxxxxxx>smallRNA(s)                                                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   xxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                   xxxxxxxxxxxxxxxx>smallRNA(s)                                                                   xxxxxxxxxxxxxxxx>smallRNA(i)                                                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                   *TSSxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   xxxxxxxxxxxxxxxx>smallRNA(se3)                                                                   xxxxxxxxxxxxxxx>smallRNA(se3)                                                                   xxxxxxxxxxxxxxx>smallRNA(le3)                                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                   xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                   xxxxxxxxxxxxxxx>smallRNA(si3)                            <-------TEIL                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           --------->ARR14(1)                      xxxxxxxxxxxxxxxxxx>smallRNA(se3)                --------->YAB1                                     xxxxxxxxxxxxxxxxx>smallRNA(se3)               ----------->HVH21                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <-----------GT1  <---------GLK1(2)                        xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------>TaNAC69(2)<---------YAB1                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ----ANAC58 --------->TOE2(2)                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ----AtLEC2 --------->TOE1(2)      ----------->GT1           xxxxxxxxxxxxxxxx>smallRNA(s)  <---------ANAC46 ----ANAC58<---------ANAC55(2)     <---------ANAC55(2)  --------->ANAC58--------->At4g35610<---------ANAC58 -DOF2<---------ICU4      --------->ARR11(1)            --------->ANAC58<---------At4g35610<---------ANAC58   tgtcttcttaattacctatgacgatttagattcgaataagtaaaatagacactaccattcgcaaatggcccattagctcagttggttagagcgtcgtgct  469700                        xxxxxxxxxxxxxxxx>smallRNA(s)                        xxxxxxxxxxxxxxx>smallRNA(le3)                       xxxxxxxxxxxxxxxx>smallRNA(s)                      xxxxxxxxxxxxxxxx>smallRNA(s)                     xxxxxxxxxxxxxxxx>smallRNA(s)                    xxxxxxxxxxxxxxxx>smallRNA(i)                    xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                  xxxxxxxxxxxxxxxx>smallRNA(s)                  <-------TEIL                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               --------->HSFB2a(1)               <---------HSFB2a(1)              <---------TOE2(2)              <---------TOE1(2)             <-----------RAV1(2)           <-----------GT1         <-----------HVH21  <---------AtLEC2 <---------ALFIN1        xxxxxxxxxxxxxxxx>smallRNA(si3)    <-----------GT1        xxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        xxxxxxxxxxxxxxx>smallRNA(le3)    xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <---------AtMYB61xxxxxxxxxxxxxxxx>smallRNA(si3) xxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<----------DOF2      ------>ZmHOX2a(2)   aataacgcgaaggtcgcaggttcgaaacctgcatgggccatgttttaacacctctacttttgatatttagtctctgatccctctattttgtgttttctta  469800                                      ------>MYB46(1)                                <------MYB83                     --------->AHL20(2)                                                 ------>ZmHOX2a(2)                     <---------AHL20(2)                                               --------->ARR11(3)                <---------AHL20(2)    ------>MYB83                                    <---------ARR11(3)              <----------DOF2   <------MYB46(1)                                  <-----------RAV1(1)           <---------ARR11(3)<---------ANAC58                            <---------ARR11(3)         <---------MYB52(1)  <---------ANAC58                  --------->YAB1   <---------TOE2(3)       --------->ANAC46    <---------YAB1     <----------DOF2 <-------TEIL  <----------DOF2   <---------ALFIN1 <---------AHL20(2)-------->P   <<<<<<<<<MYB2         --------->ARR11(3)<---------LBD16   cattcacacccgttatcttttatttatttatgcttggtccaaccctgtctttggttttcttacattcatacccattatcttttatgttgatcttggggag  469900                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                    <---------AHL20(2)                                                                    <------MYB83    <---------ICU4                                                                    <------MYB46(1) --------->ATHB12                                                                  <--------P    --------->AHL20(2)<--                                                              <---------ANAC46  <---------AHL20(2)---                    ---------->DOF2                   --------->GLK1(1)        <---------AHL20(2) ---                   --------->AHL20(2)                 <---------GLK1(1)     <---------AHL20(2) ------               <---------AHL20(2)        *TSS     <---------HSFB2a(2)   <----------DOF2        ------               --------->AHL20(2) <----------DOF2 --------->HSFB2a(2)<------ZmHOX2a(1)         ------         ----------->GT1    ------>ZmHOX2a(1)    <---------LBD16 <---------MYB52(1)<---------AHL20(2)   tttatgtagtagggttttaaattaaagctccttcttctttggtattttgcctctggaaatcgaagcgggtaggactttttatttatttattgcatacacg  470000   <---------YAB1 --->ANAC55(1) ----ANAC55(2) --->ANAC55(2) -------ARR14(2)         --------->WOX13(1) ------>ARR14(2)      --------->TOE2(3)                                              >>>>>>>>>TBF1 ---->TEIL------>ZmHOX2a(1)<---------ATHB12                                       >>>>>>>>>TBF1 ----- --->ANAC46          <---------ANAC55(2)                                       >>>>>>>>>TBF1    ----- --->ANAC58         <-------TEIL         --------->ATHB12                   >>>>>>>>>TBF1     ------- --->ANAC58     ----------->GT1  <---------LBD16<---------GLK1(1)        >>>>>>>>>TBF1       --------   tatttgtgattcctcgtcgagttacataaatcaatagcggaagtaattggatttgtgagtagagagacttaagaagaagaagaagaagaagaataccaaa  470100                    <---------YAB1                  <---------ICU4                  --------->ATHB12                  --------->YAB1                 --------->ICU4                <---------WOX13(1)           ====================================HOX2a_HOX2a           --------->At4g35610                   ----------->ARR10           <------ZmHOX2a(2)                 <---------At4g35610          <---------AGP1                     --------->ZAT2          <---------ARR14(2)                --------->GLK1(2)          ------->TEIL            --------->ANAC58     --------->MYB52(1)   <---------ZAT6<------ZmHOX2a(1)                                     <------ ---->ANAC58===================================HOX2a_HOX2a--------->AtLEC2                   <------- ---->ANAC58------>ZmHOX2a(2)     --------->ANAC58  --------->GLK1(2) --------->GLK1(2)---------->DOF2 --->DOF2 --------->GLK1(2)       <---------TOE2(3)<---------GLK1(2) <XXXXXXXXXXXXXXXXXXXXXXXMIR163 < ->AtMYB61--------->ARR14(2)   <---------YAB1--------->At4g35610  --------->YAB1      <---------ATHB12   gcaatggaaacggatctgaatgattatactgttatcaaggaaggagaagctgagattctcatgcacaagaagaatcaagtcttcttcaataaagctcagg  470200                    <-----------GT1         <------MYB46(1)              <---------AHL20(2)            <------MYB83      <---------ARR14(2)                <-----------RAV1(1)      --------->ARR14(2)        <----------DOF2      <---------GLK1(2)<----------DOF2 --------->ICU4     --------->CCA1(2)  --------->At4g35610 ---TOE1(3)<------------------------ANAC81 <---------AtMYB61                 <---------At4g35610 ----RAV1(2)<----------DOF2<---------------AGL15       <---------YAB1   <------MYB46(1) -----------GT1    <<<<<<<<<<GT-3b  <---------YAB1     <---------TOE2(3)<------MYB83   tttttccaaattctcttttatttttctttctcttctttgtaattgttggtgtttcttaagatagaggctgagataggttatctgaattggtgttctgttc  470300                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                             <-------                                                                                            <--------                                                                                       --------->KAN4(2)                                                                                     <----------DOF2                           <---------AHL20(2)                                       <---------ANAC46                          <---------AHL20(2)                                        <---------ANAC58             <----------DOF2  <-----------RAV1(1)            --------->ATHB12       <---------ANAC58   --------->ATHB12       --------->AHL20(2)          <---------ZAT18       --------->At4g35610    --  <---------AHL20(2)----------->GT1    <----------DOF2<---------ZAT14       <---------At4g35610    <-  <---------YAB1--------->ATHB12 <---------REM1(1)    --------->ZAT14  --------->WOX13(1)   <--------   gatttttattggctgctttgatttgtaattaaatgttgtagctttgttaagaccagtgaacattgatttgcaccaattagctcatggcttattcgcttgt  470400  Previous    Next  AGI:  At3g02315.1    Description:  pre-tRNA. tRNA-Ile (anticodon: AAT) Range:  from: 469667    to: 469740    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g02320.1    Description:  RNA binding / tRNA (guanine-N2-)-methyltransferase. Identical to Probable N [Arabidopsis Thaliana] (GB:Q9SRU7); similar to N2,N2-dimethylguanosine tRNA methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G15810.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96899.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65976.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96937.1); contains InterPro domain N2,N2-dimethylguanosine tRNA methyltransferase; (InterPro:IPR002905) Range:  from: 469941    to: 473724    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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