Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              <---------MYB52(1)                                           <---------At4g35610                                    ===============MYC_MYB                                    <---------ANAC55(2)                                    --------->ANAC55(2)                                    --------->O2                                    <---------O2                                    <---------TGA1a                                <-----------HVH21                                <-----------TGA1                               --------->TGA1a                               ====================MYC_MYB                               --------->ANAC46                                                     -                               --------->O2<-------GAMYB                                            -                               --------->ANAC58                      --------->At4g35610          <--      --------->At4g35610      --------->ANAC58                      <---------At4g35610         ----      <---------At4g35610    --------->MYB52(1)            --------->ARR14(2)               <-------- --------DOF2     --------------->AGL15   <---------MYB46(3)   ------>ZmHOX2a(1)  ------>ZmHOX2a(1) -   cttttttcagcaaaccatttctacgtttagcaaacgtcacttgtctgttgattttgttctctatcctcttgagctctactcttcctcttcccatctttcc  466700                                                               <---------ANAC55(2)                                                          <---------TOE2(3)                                                   --------->TOE2(3)                                                   <---------------AGL15                                                   --------------->AGL15                                                   --------->TOE1(3)                                                   <---------DAG2   --------->ICU4 -------->ANAC58              <----------DOF2     <-----------------AGL3 -------->ANAC46        <-----------GT1           =================================================== -------ALFIN1         <-----------GT1            ----------------->AGL3 -->ZmHOX2a(1)   --------->YAB1                   <-----------------AG     <<<<<<<<<GATA-1 --DOF2       <---------CCA1(2)                   ----------------->AG    <-----------GT1        ---- -------->ANAC58 --------->TOE2(3)              <-----------GT1--------->ANAC55(2)               <---   tcaccccaaaaaatccctatcttattttccctcttttatagctatttgtgtaaccttattagggtatgtaatgttttatctatatacagacacacagaaa  466800                                 <---------CCA1(2)                               ------>ZmHOX2a(2)                              <------ZmHOX2a(2)                             <---------ARR14(3)                             <---------ARR11(3)              <----------DOF2--------->ARR14(3)              <---------DAG2 --------->ARR14(2)              --------------->AGL15              <---------------AGL15             <---------ANAC58<---------AGP1      <---------ANAC58       <-----------ARR10      <---------ANAC46       --------->ARR11(3)      <---------ANAC58     ----------->ARR10  <---------bZIP60(2)    ---------->DOF2  <---------ANAC46   --------->LBD16  <---------ANAC58   <---------LBD16  <---------ANAC58 <---------LBD16                                                <------ZmHOX2a(1) =============================MADS_MADS                                  ---------->DOF2 ----->YAB1  <-----------------AGL2  <----------DOF2                  --------->ANAC58 ------ICU4  <---------ANAC58<---------ARR14(2)      --------->TOE2(3)--------->ANAC58   catgacttgggtattgctttttctggggaaagatcttatcttttggtgaagtaaaccctagttttcaagaacaagaaaagaagaggaatagctagagaga  466900                                                                     <----------DOF2                                                                    ------>ZmHOX2a(2)                                                                   <------ZmHOX2a(2)                                                                   <---------RVE1(1)                                                                  <---------ARR11(3)               <----------DOF2                                    <---------AGP1           <----------DOF2      <---------YAB1                    --------->AGP1   --------->AHL20(2)       <-------GAMYB                         --------->ARR11(3)   <---------AHL20(2)       <---------ANAC58                 <----------DOF2<----------DOF2 <----------DOF2            <---------ANAC58             --------->KAN4(2)  <---------DAG2 --------->TOE2(3)         <---------MYB46(3)  <---------ZAT18   <---------CCA1(2)                 --   aaactttaattagctttctttggtttttttggttgtgatttgatattagggctcttgtttattctttagatcttttctctttttgaagggttgtgatgag  467000                                                                                   <------MYB83                                                                                   ----------->GT1                                                                                   <------MYB46(1)                                                                                  --------->MYB46(2)                                                                                  <---------AtMYB61                                                                                  <---------MYB46(3)                                                                                 *TSS                                                                             <---------TOE2(3)                                                                             <---------TOE1(3)             ---------->DOF2                                            --------->ATHB12    <---------ARR14(2)                        --------->CCA1(2)        <---------YAB1    --------->GLK1(2)                    --------->YAB1                <------ZmHOX2a(2)    --------->ARR14(2)           ---------->DOF2                       --------->ICU4         <------    ------->TEIL          --------->GLK1(2) --------->YAB1            <---------ARR11(3)      ------- --------->GT1            ------->TEIL   ---------->DOF2              --------->ARR11(3) ------------   attgtgaatctgaagaaaagtttttgtgaatctataaaagctataaagataagaaaatttgtgagggtgagagatcattagggtttggtgatacaatatc  467100                                                                                         --------->ANAC46                                                                                         --------->ANAC58                                                                                         --------->ANAC58                                                                                     --------->SPL7                                                                                  <---------ANAC58                                                                                  <---------ANAC58                                               ----------->GT1                --------->TGA1a       <                                             ===========================================bZIP_DOF    < ---ARR11(3)      <----------DOF2            ---------->DOF2                  ======================= -->ARR11(3) <-----------GT1              --------->ANAC46             ---------->ARF1   --------->AtLEC2 >CBF      <----------DOF2         <----------DOF2              <---------ALFIN1 <-------TEIL       -   tctctctctacttctttactctttctctctcttccatcttttacacagaaagtaaaaaacattctcacaccttctctcccaagtgcgtgccacgcagaca  467200                          --------->MYB52(2)                        <---------ANAC58                    <-------GAMYB                   --------->MYB46(2)                   --------->MYB111(1)          --------->ICU4<---------ANAC58        --------------->AGL15 --------->ATHB51  --------->MYB111(2) --------->ATHB12<---------MYB52(1) ---------MYB52(1) --------->MYB52(2) ---------YAB1  ------------>MYB.PH3(2)  <---------TOE2(3)        <---------MYB52(2) <---------AHL20(2) ============================MYC_MYB<---------ICU4     <---------TOE2(3)      ----------->GT1 -------->ICU4 --------->MYB111(1) --------->ICU4--------->AHL20(2) --------->MYB52(1)   ccattatttgccatgagtagttagttgctagttgctactaattaagaaaaatgaattaagtttttaaaacaaacgttgtctagttatataatccatgtcc  467300                                                         --------->MYB52(2)                                                        <---------TOE1(2)                                                        <-------TEIL                                                        ------->TEIL                                                        --------->SPL7                                                     --------->ANAC58                                                     --------->ANAC46                              --                                                     --------->ANAC58                       ---------                                                    --------------->AtSPL3                  <--------                        >>>>>>>>>>>>>>>>>LFY--------->MYB59 --------->WRKY38(1)            <---------AHL20(2)          --------->CCA1(2)             ----------------------->TaNAC69(2)            <----------DOF2         <---------ARR11(3)  <---------ATHB12     <---------REM1(2)                --------->ARR11(3) <-------TEIL    <---------ANAC46       <----------DOF2 <---------TOE2(2)          <---------ARR11(3)   atatacatctagatatatgacttagataccaatgtttcgactcttttaggtctacacgtacgttgcccaaacttcatatttgagacatctttatttattt  467400                           ------>ZmHOX2a(2)                         <---------ARR11(3)                         --------->ARR11(3)                         --------->ARR14(2)                        <---------TOE2(3)                         <---------ARR14(2)                        <---------TOE1(3)                         <---------AGP1                         --------->DOF5.7(2)   ------->GAMYB         ------->TEIL                <---------AHL20(2)          ------>MYB83 --------->At4g35610    <---------CCA1(2)           --------->YAB1<---------DOF5.7(2) ------->ETT(2)     <---------AtLEC2    --------->DAG2<---------YAB1             ------>MYB46(1) >AHL20(2)         <-------TEIL<---------ARR11(3)   --------->AHL20(2)         --------->TOE2(3) -AHL20(2)        --------->AtLEC2    ---------->DOF2--------->AHL20(2)        <---------MYB59     --   gtcaacagaaatattgaaacatgcatggatcttgatattctaaaggtgcctgaattaaaatagaacgataacgttttaaaacctaattcccaatttgtag  467500                               --------->ANAC58                               --------->ANAC46                               --------->ANAC58        <---------ANAC58   <-----------GT1        <---------ANAC58  <---------YAB1   <---------AHL20(2)  <---------AHL20(2)  --------->AHL20(1)   <---------YAB1  <---------AHL20(1)   --------->AHL20(2)   <---------ANAC46            --------->DAG2              - ------->AHL20(2) ------>ZmHOX2a(2)         ----------->GT1            ---------->DOF2       --------   tttatatatttcttgtttgatccatattattacaagcctatatatagtgtatataaaactcaattaagcttcaaaaagtcagaaaactcatcaatagctc  467600  Previous    Next  AGI:  At3g02310.1    Description:  SEP2 (SEPALLATA2); DNA binding / transcription factor. Identical to Developmental protein SEPALLATA 2 (SEP2) [Arabidopsis Thaliana] (GB:P29384); similar to SEP1 (SEPALLATA1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G15800.1); similar to SEPALLATA2 [Arabidopsis lyrata subsp. petraea] (GB:AAU82031.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) Range:  from: 464286    to: 467081    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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