Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <---------ANAC55(2)                   ----------->GT1                   --------->ANAC55(2)              --------->WOX13(1)                  ----------->GT1                                  --          <-----------GT1                    <---------AHL20(2)                                 <----        --------->ARR11(3)       <---------ANAC55(2)                                           <-----       <---------ICU4        <-----------HVH21---------->DOF2                                --------   --------->AHL20(2)      <-------MYC3      --------->AHL20(2)          <---------AHL20(2) <--------   <---------AHL20(2)      ------->MYC3  <---------------AGL15         <---------RVE1(1) <---------AHL20(2) ----->AHL20(2)  --------->AHL20(2)      <---------YAB1              <------ZmHOX2a(1)  --------->AHL20(2) ------AHL20(2) <---------ATHB12 --------->ANAC55(2)               <---------TOE2(3)  <---------GLK1(2)   taaatttaaatatcaccaattaagtaacatgtgtcatgtgattctaattaaagagtaaaactgttcatttaggatttttttaaaatcagattttataatc  458000    --------->ARR14(2)                                 <---------AtLEC2        --------->ANAC58    <---------ARR14(2)                           <---------DAG2                ----------->GT1 ------->AtLEC2                                  <----------DOF2               --------->ANAC46 -----ICU4                                 <----------DOF2                ----------->HVH21 ----YAB1       <---------ZAT6            <---------ANAC58          ----------->HVH21          <----- ->YAB1--------->TOE2(3)                  <---------ANAC58  ---------->DOF2    --------->ANAC58------ -YAB1 --------->TOE1(3)       ---------->DOF2<-----------GT1     --------->At4g35610  ---------->DOF2   aatgcaaaacctcaactagtctaaatttctgaagaaagtagtttgcttttactttttgtatggaaagtagatgacactgacacgaaaaaaaaagagatta  458100                                                                       --------------->AtSPL8                    --------->ATHB51                                -------->HAHB4                    <---------ICU4                                  <---------ICU4                    --------->ATHB12                             <---------ICU4                    -------->HAHB4                               --------->YAB1                    <--------ATHB1                              --------->ICU4                   <---------YAB1                 <---------ANAC58  <---------AHL20(2)                   --------->AHL20(2)             <---------ANAC58 --------->ICU4                   <---------AHL20(2)             <---------ANAC46 <---------YAB1                   --------->ICU4              <XXXXXXXXXXXXXXXXXXXXMIR4239  ------>ZmHOX2a(1)                   <---------ATHB51           <---------ANAC58  <---------ATHB51           --------->ANAC46                   <---------ANAC58  --------->AHL20(2)           <----------ID1             --------->KAN4(1)         <---------AHL20(2)          --------- ----AHL20(2)    --------->YAB1       <---------KAN4(1)        <---------AHL20(1)     ------->GAMYB --->AHL20(2)  --------->AHL20(2)    <---------KAN4(2)         --------->AHL20(2)  <-----------GT1   atttcagtattaaacgaaaaaataattgcagaagcacagaataatcgggcatgcgtgagtaacaaaataattattcgtcctccattaaccccataaaagc  458200                    ----------->GT1    --------->GLK1(1)                                    --------->HSFB2a(2)   --------->ARR11(3)                  --------->DAG2    <---------HSFB2a(2)               --------->DAG2 ->DOF2         --------->AHL20(2)    ---------->DOF2  --------->MYB52(1)                 ---------->DOF2   agtgagatttcgataaaaaaaaatgtgatttggaaacagaaaaaggagttttcaaacttacagaaaaacatttcttatacgtctaaaattcaaaaagttc  458300                                                               <---------AHL20(2)                                                             <---------YAB1                                    <---------AHL20(1)      --------->AHL20(2)                                    --------->AHL20(1)     <---------ICU4                                    <---------AHL20(2)     <--------HAHB4                                    --------->AHL20(2)    <---------YAB1                                   <---------AHL20(2)   <--------HAHB4                             --------->YAB1             --------->YAB1                             ----------->GT1   <----------DOF2--------->AHL20(2)          <---------WRKY38(1)                  --------->YAB1   --------->YAB1       <---------ICU4              ---------->DOF2                 <---------AHL20(2)--------->AHL20(2)  <---------YAB1            <-----------TBP                --------->AHL20(2)--------->ICU4     --------->YAB1  <---------GLK1(2)    <---------WRKY12    ---------->DOF2   --------->GLK1(2)<---------AHL20(2) --------->ICU4       <---------YAB1      <-   aaaatacaaagtcatctatataataatctaagcgtaattatattatgttctttgattatcattattatatagaattttgttatttttaaaggtcaactta  458400                                                                                   --------->YAB1                                                             --------->YAB1    <---------ICU4                                                        ------>MYB46(1)       <---------YAB1                          *TSS                          ------>MYB83        <---------ICU4                        --------->ANAC46               <---------ALFIN1     --------->YAB1               <------------CBF         ------>ZmHOX2a(1) <----------DOF2  <---------ATHB12          <---------At4g35610     <---------ARR11(3)  --------->MYB46(3) --------->YAB1          --------->At4g35610     --------->ARR11(3) --------->ANAC58    --------->WOX13(1) ----------GT1--------->ATHB12  ------->TEIL         --------->ANAC58   --------->MYB46(3)       <---   ttttctgtttgaagctccattggcatccacaacgaagctctcctctgtctctctcacccactttcataacaacaacaatcatcattcatcttcatcttct  458500                                                                                    --------->LBD16                      <---------ATHB12                                             ------>ZmHOX2a(1)                  --------->LBD16                                                  --------->LBD16                 --------->ANAC55(2)                                              <---------LBD16                 --------->ANAC46                                                 --------->TOE1(2)           <---------DAG2             --------->DEAR3(1)                   <-----------GT1         <-           <----------DOF2            --------->At1g77200     ------>ZmHOX2a(1)  ----------->RAV1(2)       ------>ZmHOX2a(1)    <----------DOF2           --------->YAB1     <-----------GT1    --------- ------ZAT14    <---------LBD16      --------->DEAR3(2)       <----------DOF2 <----------DOF2      --   tcagtgttcctcactttttccgcaatctttctttttatcaccgacgagaaaacaaatagtaatccttttgaagtttttcactttcctgggaaattgcaca  458600                                                             <---------MYB52(1)                                                           ----------->GT1                                                           <---------MYB46(3)                                                           <---------DEAR3(2)                                                          <---------TOE2(2)                                                          <---------DEAR3(1)                                                          <---------TOE1(2)         --------->DAG2                --------->AHL20(2)   ---------->DOF2   <---------ANAC58            ---------->DOF2                <---------AHL20(2)  <---------AHL20(2) <---------ANAC58         ------>ZmHOX2a(2) --------AHL20(2)      ---------->DOF2              <----------DOF2       <---------At4g35610      -- >ZAT18--------->GLK1(2)    ----------->GT1   ---------->ID1<-------GAMYB --------->At4g35610      <- ------->AHL20(2)     <---------AHL20(2)      <---------CCA1(2)           ----------->RAV1(2)    ----   attaatgagtttctatatttatattaaaagttgaaaatttaaagccttgtctctctttcgtcggttaatttgtttcatctgatcgaaaaggaatcagttt  458700                       --------->ZAT2                       <---------At4g35610                       --------->At4g35610           ------>ZmHOX2a(1)           ================================HOX2a_HOX2a        ------>NtERF2  <---------ZAT2  <----------DOF2  ------>NtERF2                  <----------DOF2                    --------->HSFB2a(2) ------->ARR11(3) --------->LBD16       <---------TOE2(3) <---------AHL20(2)         <---------HSFB2a(2) --------ARR11(3) ------>NtERF2     <------ZmHOX2a(2)     --------->AHL20(2)   <---------ICU4 ----->MYB59    <---------LBD16 <---------HSFB2a(2)   <----------DOF2 --------->AHL20(2)   aggtctttgcctcctctctccggccagctcaattctcgatcaaaggtttactctttctttttaatttttcgattatttgaaaaattactagaaatatgtt  458800                   <-------GAMYB                  ------>ZmHOX2a(2)              ======================HOX2a_HOX2a              ------>ZmHOX2a(1)              <---------YAB1           <------ZmHOX2a(2)          <---------ARR14(2)                                                   <---------MYB46(3)          --------->ARR14(2)                                                <---------DEAR3(2)          --------->ARR11(3) ------>ZmHOX2a(2)                              <---------MYB46(3)         ------->GAMYB--------->MYB52(2)                                   <---------At1g77200      --------->YAB1<---------MYB52(1)                    <---------At5g28300<-------GAMYB      --------->MYB52(1)    <---------At4g35610          <-----------GT1   <---------DREB2C(2)  <----   ttcatcaataacgatcctgatcgttatttgatctcacaagtttgttttctgatcaaattttactgtttttttgtttgtcggttgatacactctgtttttc  458900  Previous    Next  AGI:  At3g02290.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to E3 ubiquitin-protein ligase At3g02290 [Arabidopsis Thaliana] (GB:Q8LE94;GB:Q56XU2;GB:Q9SRU5); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G15790.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G15790.2); similar to hypothetical protein [Cleome spinosa] (GB:ABD96851.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 458426    to: 461026    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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