Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  --------->At4g35610                                                  --------->ARR11(3)           <-------TEIL                           <---------ARR11(3)         --------->ARR14(2)                    <---------HSFB2a(2) ----------->GT1         <---------ARR14(2)               -------->HAHB4        <---------At4g35610 <---------ZAT18                          --------->ATHB12    <-----------RAV1(2) --------->ZAT18                         <---------YAB1    <---------ZAT14 ----MYB46(1)                            --------->ICU4    --------->ZAT14 ----MYB83--------->CCA1(2)         <------ZmHOX2a(1) <---------YAB1                        <------ZmHOX2a(1) ------AtMYB61--------->ANAC46      ======================HOX2a_HOX2a            <-----------GT1  --- ----P <---------TOE2(3)          <---------TOE2(3)<------ZmHOX2a(2)          ----------->GT1    <---   tggtccactaagatacaccaaaaaaaaaaaaacagtaaggaaaatgattcgagatcatcactgttcagatggaaaataactagtaactcatctaggatag  448100                                                                       --------->AtMYB61                                                                       <---------MYB59                                                                     ------>MYB46(1)                                                                     ------>MYB83                                                                    --------->ORA47(1)              -                                                      <---------At4g35610                   ---------           --------->At4g35610           ----------------->AGL2    <---------MYB46(2)       ---------      --------->DAG2       --------->DAG2<-----------------AGL2    <---------MYB59          ---------     ---------->DOF2      ---------->DOF2<-----------------AGL3   --------->DEAR3(2)    <-----------HVH21 -------->RAV1(1)---------->DOF2         ============================================================ -------ID1<---------At4g35610--------->ALFIN1        --------->At4g35610    --------->TOE2(3) ------   caacaaaaaaagcagatgccaaagctcagaaagtggaagacgaactagaaatggacagctaaattgataccgacctaaaccttgattcagtgtcaagtca  448200   ------>MYB46(1)                    --------->GLK1(1)   ------>MYB83                      --------->ARR11(3)          <---------ARR14(2) <---------------AGL15               <---------ARR11(3)          --------->GLK1(2) <---------MYB111(1)           ----------->RAV1(2)               <-----------ARR10 <---------MYB59           <---------ARR14(2)                    --------->ARR14(2) --------------->AGL15     --------->ARR14(2)              --------->TOE1(2)                       == ---------------->AGL3   <---------HSFC1(2)               <---------ZAT2                           == >ANAC58                 <---------HSFB2a(1)              --------->At4g35610            <---------ANAC58 >TGA1a    <------ZmHOX2a(2) ------>ZmHOX2a(2)            <---------At4g35610            <---------ANAC58 >ANAC58   ======================HOX2a_HOX2a              --------->ZAT2                --------->ZAT2 ================MADS_MADS<------ZmHOX2a(1)       <---------ARR11(3)                   <-----------ARR10 --------->AtSPL8        --------->HSFC1(2)       --------->ARR11(3)            ---------->DOF2    <-   gtacctaatagagatcgagatagtagaaggatcgcctgagatatcgaaacaagagcttgaagctgcgaatcggaccatgtctcaaagcgtagcttgccag  448300                      ===============================HOX2a_HOX2a                      ------>ZmHOX2a(2)                      ============================HOX2a_HOX2a                     <------ZmHOX2a(2)                     =============================HOX2a_HOX2a                     ================================HOX2a_HOX2a                    <---------ARR14(2)                    --------->ARR14(2)                   <---------SPL7                --------->LBD16                <---------At4g35610               --------->ANAC46               --------->DEAR3(1)              --------->ATERF1(1)                                                           ---------              <---------LBD16   --------->ANAC46                                 --------->YAB1             <---------ATERF1(1)--------->ANAC58                                 --------->ATHB12            --------->ARR14(2)  --------->ANAC58                                <---------ATHB12            <---------ARR14(2) ------>NtERF2                       --------->ZAT18          <--------     --------->At4g35610   ----------->HVH21             --------->MYB52(1) ------>ZmHOX2a(2)<-------   --------->YAB1 --------->DEAR3(1)                 ---------->DOF2   <----------DOF2     --------->DOF5.7(2) ============================HOX2a_HOX2a      =====================================HOX2a_HOX2a    <-- ===========================HOX2a_HOX2a    <------ZmHOX2a(1)       <---------ZAT18       <---------ANAC46 -----ZmHOX2a(1)------>NtERF2 <---------ALFIN1<------ZmHOX2a(1) --------->ATERF1(1)--------->At4g35610   aggaatcagcatcgtctccgccgatcggagcgacaccccagcgaaggaggagatagaaagaacggagaccgcgcttgatcgaatcatcggagcgtaaacg  448400           ------>ZmHOX2a(2)                                                             ------------          --------->At4g35610                                                        ----------->RAV1(2)         <---------ARR11(3)                                                     --------->bZIP60(2)<-         --------->ARR11(3)                                               <-------TEIL   <-----------         --------->ARR14(2)                         <------NtERF2        --------->CCA1(2)         <-         --------->AGP1                             <---------------------WRI1  --------->ANAC58   <-         <---------AGP1                           <---------ANAC46       --------->ARR14(1)  <-------         <---------ARR14(2)                      <------NtERF2          <---------GLK1(2)------------        <---------GLK1(1)                       <-----------HVH21       --------->ARR11(1)   --------        --------->GLK1(1)                      --------->ALFIN1         <---------ARR14(2)-----------   ---------->DOF2                          <---------DEAR3(1)          --------->ARR14(2)<---------- >ARR14(2)--------->CCA1(2)    ---------->DOF2<------NtERF2           ----------->ARR10  <----------- -ARR14(2)<------ZmHOX2a(2)<----------ID1--------->DAG2              <------NtERF2   <---------At4g35610 --DOF5.7(2)        <---------------------WRI1--------->ATERF1(1) --------->At4g35610--------->At4g35610 -------ANAC46  <---------At4g35610    ---------->DOF2       <---------GLK1(1)  --------->ANAC58  <--   gcgagaaaagagatctgaagatgccgaagacgacaaagagggaaaggcggtgtcgtcgaagagaaatcggcagagattcgccaagtcatctgccatttct  448500      ---------->DOF2 ----->AGL1 --------ANAC58 ------AGL2 --------ANAC46 --------ANAC58                        <---------HSFB2a(2) --ARR14(2)                            --------->HSFB2a(2) ----->AG                              --------->HSFC1(1)                     ----------->GT1 ->ARR14(2)                            <---------HSFC1(1)               <------MYB46(1) ---->AGL15                      ----------->GT1                        <------MYB83 -----AGL15                     <---------TOE2(3)                      --------->MYB59 ------AGL3                <------ZmHOX2a(1)               ---------->DOF2 --------->MYB52(1)    ---- -------------------WRI1  <----------ID1         ----------->GT1     <------ZmHOX2a(1)   ---------->DOF2   ggcgaggcgaaagaagaagagttcgatgaggaaaaaggtttctagagaaataggtatatacaaaaggaagaggaaggtaagggtttataagtaaagaatc  448600       ---------->DOF2     ----------->HVH21    <------NtERF2                                                                              <-----    --------->At5g28300                                                  --------->YAB1      <-------   ----------->GT1                                                    <----------DOF2      --------->AHL20(2)  <---------DEAR3(1)                                             <----------DOF2           <---------AHL20(2)  <---------DREB2C(2)                        ---------->ID1------>ZmHOX2a(1)              --------->AHL20(2) ------>DOF2 <------ZmHOX2a(1)            <<<<<<<<<TBF1   --------->TOE2(3)      --------->At4g35610   aaaggcggtgaaagaggactctgtggagaagacgatgttccttcttcttcgttttcatttccttattcttttctttcaaaatcagcccaaaaattaatat  448700                <---------YAB1               <---------AHL20(1)               <---------AHL20(2)        --------->TOE2(3)    --------->KAN4(2)   --------->KAN4(1)                                       <------------CBF   <---------KAN4(1)                                      --------->ATHB51                     ------  <------ZmHOX2a(2)                                       --------->YAB1                 --------->At4g35610 --------->ARR11(3)                                      <---------YAB1                  <---------HSFC1(2) <---------ARR11(3)                           <---------MYB52(1)                         --------->HSFC1(2) ----ICU4<----------DOF2  ----------->GT1    --------->TOE2(3)                      --------->YAB1 --TOE2(3)   <---------YAB1  <---------AHL20(2)        --------->YAB1            ----------->GT1  ---   ttagatcattcctttattatttttcacttagttaaatttctctaattcgttagataactataattgtttttttttgggaaatactgtaataagcttccta  448800                                                                          --------->TOE2(3)                                                                         --------->ATHB12                                                                         <---------ICU4                                    --------->TOE2(3)         <---------AHL20(2)                 <---                                   --------->ANAC46          --------->AHL20(2)          ----------->GT1                             <---------AHL20(2)           --------->CCA1(2)            ------->MYC3 >ZmHOX2a(1)                 --------->AHL20(2)          <---------ARR11(3)            <-------MYC3 ------>YAB1      ---------->DOF2<-----------GT1         --------->ARR11(3)    --------->YAB1  ------   taatacatttacaaaaacataaaagttgtatttatatacctcatacatgtaatggatgagatataaaatagcacatcattagaataacacatggaaaaaa  448900                                     --------->KAN4(2)                                    --------->KAN4(1)                                    <---------KAN4(1)              <-----------GT1                                    --------->HSFB2a(1)       <-------MYC3                                    <---------HSFC1(2)  ------->GAMYB                                    --------->HSFC1(2) <---------MYB55(2)                                    <---------HSFB2a(1)<---------MYB52(2)                                   <---------KAN4(2)   --------->MYB46(3)                               --------->YAB1        --------->MYB52(1)                            <-                              <---------ATHB12     --------->DEAR3(2)         --------->ATHB12     -- ---------->DOF2            --------->WOX13(1)     --------->MYB46(3)--------->MYB46(3)          <--- -------ID1             --------->YAB1    <----------DOF2     ------->MYC3   --------->AHL20(2)<----- ---->DOF2       --------->AtLEC2 <---------GLK1(2)--------->ATERF1(1)   --------->AtMYB61     <-----   agacaaagtaatctcttcgatgcaaataatcaatcagaatgttccttttgggagccaacgaacacatgtttaccaccaattcattagccatcttcatcgt  449000  Previous    Next  AGI:  At3g02260.1    Description:  BIG (DARK OVER-EXPRESSION OF CAB 1); binding / ubiquitin-protein ligase/ zinc ion binding. similar to HAC12 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 12), H3/H4 histone acetyltransferase/ transcription cofactor [Arabidopsis thaliana] (TAIR:AT1G16710.1); similar to hypothetical protein OsJ_027370 [Oryza sativa (japonica cultivar-group)] (GB:EAZ43887.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75802.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96935.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain Zin Range:  from: 430991    to: 448496    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g02270.1    Description:  eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein. similar to eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G34970.1); similar to eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G18300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48128.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain eIF4-gamma/eIF5/eIF2-epsilon; (InterPro:IPR003307); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004) Range:  from: 448984    to: 451014    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version