Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          --------->ANAC58      ---------->DOF2                                              ----------->HVH21    --------->At5g28300       --------->AtLEC2                   <---------At4g35610   --------->LBD16         <---------ATHB12                      --------->At4g35610             ----   ----------->GT1  <---------ARR14(2)                           ----------->RAV1(2)             <---  --------->ATERF1(2) ------>ZmHOX2a(2)                   --------->ARR14(2)                     ----  <---------ATERF1(2)<------ZmHOX2a(2)                    <---------GLK1(2)                      <--- <---------LBD16    --------->ARR14(2)              <---------GLK1(2)   --------->ANAC58         <--- <---------ANAC46   --------->ARR11(3)              --------->ARR14(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------RAV1(1)     <---------ARR11(3)   ----------->GT1  <---------ARR14(2)                     <--- >HVH21         ---------->DOF2  ------->TEIL       <---------ARR14(2)  ----------->GT1         <----   gttgccggtaaaacacttgaaagatcccattcatgcatccaaactgtttattcagatttggattctcatctgacaagttatatagaagttttgcagacat  399400            <---------MYB59       ------>ZmHOX2a(1)    XXXXXXXXXXXXXXXXXXXXX>MIR4221 ----->ARR11(3) ------ARR11(3) ----->ARR14(2)                                                                                    -- ------ARR11(1)                                                                         <----------DOF2 ------ARR14(2)                    <---------ARR11(3)                                  <---------MYB52(1) --------ARR10         --------->TOE2(3)                                        <-----------GT1   <-- -----CCA1(2)       <---------CCA1(2)                                       --------->AHL20(2)   ----   atcttcttcctctacttaactcttatctcaaaaacaagataactaaaaaaactttcacaaactcaagtttctcttcatatatatactctgttttttggag  399500                        <---------At4g35610                        --------->At4g35610                        <---------ZAT2                        <---------ZAT14                        --------->ZAT14        <---------ANAC58      ---------->DOF2               --                  <-----------GT1      --------->ARR11(3)        ------------------------>ANAC81  ---    <---------GLK1(2)   --------->ZAT2 <---------ARR11(3)    <------ZmHOX2a(1)                    --- ------>P   ---------->ID1 <-----------RAV1(2) <---------ANAC58  >>>>>>>>>TBF1             --------->ANAC58 ---------GT1 <----------DOF2       <---------TOE2(3)     --------->At4g35610              --------->ANAC58 ------------------->TaNAC69(2)    ---------->DOF2        <---------At4g35610   <----------ID1 ------   ttaccagtttcttcgtctttttactctgctcaggggttaaagatgtttttcttgtgtttcagaggaagaagaaaagaagaaatggacaagaagaagccaa  399600                                                         <---------ANAC46                                                         <---------ANAC58                                                         <---------ANAC58                                             <---------GLK1(2)           --------->YAB1               ----------->RAV1(1)   <----------ID1                       --------->MYB52(1)--------->LBD16 <---------DOF5.7(2)              --------->ZAT2   --------->ARR14(2) --------->MYB52(1)               --------->At4g35610  ------>ZmHOX2a(1)      --------->TOE2(3) ------->DOF5.7(2)             <---------ANAC58    <---------ARR14(2)    --------->ATERF1(1) ------>TOE1(3)                <---------ANAC58  <------MYB83     <---------ANAC46 ------>TOE2(3)                <---------ANAC46  <------MYB46(1)  <---------ANAC58      ---------->DOF2 ----->RAV1(1)               --------->CCA1(2)  --------->MYB59   <---------ANAC58   >>>>>>>>>TBF1  -   cattaacgacaaattatagcttcttgtgaagttacgagcagacaacagattaggttcctccgtgtttggcttggaggctaccttgaagaagaaagaagag  399700                                                              ---------->DOF2             --------->DAG2                                <----------DOF2<-------TEIL*TSS            ---------->DOF2                                --------->TOE2(3)    <-----------HVH21  ----------->GT1                                        <-----------------AGL1------->GAMYB ----------->GT1                                 ----------->GT1    ---------->DOF2---------->DOF2 ---------->GT1                     <----------DOF2    <---------CCA1(2) --------->CCA1(2)  <--------   aagggggaaaaaaaaaaagttttttttttgtttttggtctttgagagagagaggtttctatctttaaaggcaaagatacaactgtcaaaggaggctttga  399800                               <-------MYC3                                    <---------ZAT6                           ------->TEIL                                 ------->TEIL                           <-------TEIL                              --------->ANAC55(2)    ---------                       ------->TEIL                               <---------AHL20(2)    --------->ZAT6                      <---------AtLEC2       ----------->GT1   --------->ARR11(3) --------->AHL20(2) --DOF2     <---------AHL20(2) ------->MYC3---------->DOF2     <---------ARR11(3)<---------YAB1   ---   agtttgaagcatatataatgtaatgcatgtacatgtgttaacatataaagtttatacatgtatgagattttatgtattttagtattatatacactagtaa  399900                                                        <------ZmHOX2a(1)                         ---                                                  <---------ICU4                                  <--                  <-----------HVH21               --------->YAB1                                <----              --------->ICU4                     <---------ATHB51                               -----            --------->YAB1                       <---------ATHB12                            --------           <---------AHL20(2)                    --------->ICU4                        --------->ANAC58           --------->AHL20(2)             --------->ANAC58                             <---------ANAC46   --------->ARR11(3)   --------->GLK1(1) --------->ANAC46                             <---------ANAC55(2)   <---------AHL20(1)   <---------GLK1(1) --------->ANAC58                    <---------YAB1------->MYC3  <---------CCA1(2)     <---------ZAT14--------->At4g35610               ------>ZmHOX2a(1)  <-------MYC3 >YAB1   <----------DOF2--------->ZAT14<---------At4g35610--------->GLK1(2) --------->YAB1------->TEIL ------>TOE2(3)<---------ICU4      --------->GLK1(2)--------->ICU4  <---------At4g35610--------->ANAC58   tcttatatattctttaattatgtcagagctctgaaaaattctgctcgccaaataatgaggaatctgtttcatctcctaagatgatagttacgcacatgac  400000                                                                                <---------YAB1   --------->ANAC58                                                           --------->YAB1   --------->ANAC46                                                          <---------YAB1   --------->ANAC58                            <---------LBD16             --------------->AGL15 ------>At4g35610                    <----------DOF2                       <---------------AGL15 -------At4g35610                    <---------DAG2                       ----------------->AGL3 -----bZIP60(1)                <---------AHL20(2)          ----------->GT1<-----------------AGL3 ---->bZIP60(1)               --------->AHL20(2)      <---------AHL20(2)  ------>ZmHOX2a(2)     ----- --->HVH21                    <---------AHL20(2) ----------->GT1        <---------AGP1     --------->MYB59   agcacaaggcaacttatttagagaaaacaaaattaaatgctttttgaaattcggaaaaaattggttatattttggatctattataagaaatgttaggcat  400100                                                             <---------ANAC55(2)            --------->ATHB12    <XXXXXXXXXXXXXXXXXXXXMIR837-5P     <---------AHL20(2)        --------->ATHB12        <---------ATHB12         --------->YAB1  <<<<<<<<<GATA-1             --------->WOX13(1)        <---------YAB1 <-----------GT1   --------->TOE2(3)                 <---------AHL20(2)<-----------GT1        <------ ---->ICU4<---------WOX13(1)<---------YAB1      <-------TEIL --------->ANAC55(2)  <---------ICU4   gtttatctattcattgatttatctcaaattgtcaatgaatgagaaattgatacattttataatacatattttttttctctccaaatatgactctctcttt  400200                                     <---------AHL20(1)                                     <---------ARR11(3)         --------->At4g35610                 --------------->AGL15--------->AHL20(2)  --------->ICU4                <<<<<<<<<GATA-1      --------->AHL20(1)   <---------YAB1  ===============================MADS_MADS  <<<<<<<<<GATA-1<---------ICU4  <---------------AGL15              --------->ARR11(3) --------->YAB1 ----DOF2      <-----------GT1    --------->AHL20(2)   <---------YAB1               <-------TEIL    <   ttttctcttagaagttttatctattttagcaaaaaaaaaaatatttatctatgagttttgataattagctaagttagccttacacatccatgtgaacaaa  400300  Previous    Next  AGI:  At3g02170.1    Description:  LNG2 (LONGIFOLIA2). similar to LNG1 (LONGIFOLIA1) [Arabidopsis thaliana] (TAIR:AT5G15580.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96924.1); contains domain Uracil-DNA glycosylase inhibitor protein (SSF54441) Range:  from: 396019    to: 399786    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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