Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             ------>ZmHOX2a(1)          --------->TOE2(3)     -------->HAHB4     <---------ICU4    <---------YAB1    --------->ICU4  <--------ATHB1                                                             <---------TGA1a  --------->YAB1                                                             <---------O2  <--------HAHB4                                                             --------->TGA1a  --------->ATHB51                                                           --------->ANAC58  <---------ICU4                                      --------->ANAC58       --------->O2 --------->AHL20(2)            <<<<<<<<<<<<<<<<<LFY   --------->ANAC58<-----------GT1 <---------ATHB51           --------->YAB1       <---------YAB1 <---------AHL20(2) --------->ICU4            <---------YAB1--------->MYB52(2)    --------->AHL20(2)     ------->TEIL <---------ATHB12    <---------MYB52(1)  ----------->ARR10     --------->YAB1--------->ANAC58 ------->YAB1      ----------->GT1   <---------MYB46(3)       <---------YAB1 --------->ANAC46   acaataattattcctaaaatgtcgttattttcataacattggttagatgttctaataagctactattatatataacttcacgtcaatgtatgtttgattt  390700                                       <---------------AGL15                                       <---------DAG2                                       --------------->AGL15                                      <-----------------AGL3                                   <---------ARR14(2)                                              --                                   --------->ARR14(2)                                              --                          <---------GLK1(1)                                                 <--------                         <---------ARR11(3)                                                 <--------             ----------->GT1    <---------ANAC46                      <---------YAB1        <--------  <---------At4g35610    --------->ARR11(3)         <-----------GT1 --------->YAB1         <-------TEIL  --------->At4g35610   <<<<<<<<<RAP2.2<----------DOF2             <---------YAB1  <---------CCA1(2)   tggcatctaaaatttctgtaaaatttagatattcgcgtatactttttttgggattttcttcttagccgtattataactgcaactcatatcacatacgtgg  390800     <---------ARR11(3)     --------->ARR11(3)     <---------AHL20(1)      --------->LBD16     --------->AHL20(1)     <---------ANAC46                <---------TOE2(3)  --------->AHL20(2)      ==============================HOX2a_HOX2a --------->GT1            ------>ZmHOX2a(1)          --------->YAB1                         <-------- ------->YAB1       --------->ARR11(3)            --------->TOE2(3)                <---------YAB1 -ANAC58            <---------ARR11(3)           ------>ZmHOX2a(2)             <---------WOX13(1) -ANAC58            <-----------ARR10        <---------YAB1---------->DOF2   <---------WRKY18(1)<---- -ANAC46           --------->RVE1(1) <---------ARR14(2)  <---------YAB1  ------->TEIL     <---------At4g35610   atgataaaatattcgagtttaatatctcctccgtatgtagatttgatatgatccataatattaaagatgaaaatgaacttgactgattattcagcgcatt  390900                                   ------->MYC2                                   <-------MYC2                                   <-------PIF5                                   ------->MYC3                                   ------->PIF5                                   <-------MYC4                                   ------->MYC4                                   <-------MYC3                                  --------->O2                                  >>>>>>>>>>HY5                                  <<<<<<<<<<HY5                                  --------->PIF3(3)                                  --------->TGA1a                                  <---------O2                                  <---------bZIP60(2)                                  <---------TGA1a                                  <---------PIF3(3)                                <---------ALFIN1                              ------>NtERF2                              <-----------HVH21                             --------->ANAC58                             --------->ANAC46                             --------->ANAC58                  <---------ARR14(2)                               --------->TOE2(3)                 <------ZmHOX2a(1)--------->bZIP60(2)    <----------DOF2      <-----------GT1     --------->ARR14(2)             <---------DAG2 <---------AHL20(2)       <---------ARR14(2)            <---------ANAC58 <---------AHL20(1)      <---------GLK1(1)              <---------ANAC58  <---------ANAC55(2) --------->AHL20(2)      --------->GLK1(1)        <-------TEIL    --------->YAB1            --------- -ZAT18       <---------HSFB2a(2) ==================================bZIP_DOF      ------------>CBF ---TEIL      --------->HSFB2a(2)------>NtERF2 --------->REM1(1) >>>>>>>>>MYB98  --------->RAP2.6(2)   cattttattttcccttcgaggatagcgaaatccgccacgtggcattactacatccattgctttttttaacataaatacttaagtcgcaattcttctaaat  391000                    <------MYB46(1)                    <------MYB83                  <--------P           --------->ARR11(3)           <---------ARR11(3)                          <----------DOF2          --------->YAB1                   --------->ANAC58                  <-----------GT1<--------         <---------YAB1                    --------->ANAC58              <----------DOF2    ---------     <---------ANAC58                    ---------->DOF2           <----------DOF2     <---------YAB1     <---------ANAC58                  --------->HSFB2a(2)      <-----------GT1 --------->TOE2(3) ------>AGL15<------------CBF          <---------HSFB2a(2)      *TSS   ---------->ID1 <-----------GT1   tttggaggcttatgatattggtagggttctcatattcacttccaaaagcatcttcttctttctaattttctttttctttttatcttattttcattttatt  391100                 --------->DAG2                                                     --------->HSFB2a(2)    <---------DAG2                                                               <---------AHL20(2)    <----------DOF2                                                             --------->AHL20(2) -AHL20(2)      ---------->DOF2                                          <-----------GT1      xxxxxxx >AHL20(2) ---------->DOF2                                          --------->YAB1  <---------HSFB2a(2)   catatactttttgaaaagaaaagtcgaatcacatactttcttctctctatttctcattctctcttcttcatcatattactcattttatagaacagcaaaa  391200                                                                 <------------------------ANAC81                                                               <-------MYC3                            --------->SPL7                     ------->MYC3         ------>ZmHOX2a(1)<---------SPL7                   <---------ZAT14    <---------GLK1(1)    ----------->GT1                   --------->ZAT14                        ---    --------->GLK1(1)   --------------->AtSPL8         --------------->AtSPL3                    <---   <---------ARR11(3)   --------------->AtSPL3    --------->ANAC58                         --------->LBD16   <---------GLK1(2)  ------------------>SPL14    --------->ANAC58                       <---------LBD16 xxxxxxxxxxxxxxx>smallRNA(fl3)           <---------GLK1(1) <---------ZAT18       <<<<<<<<<TBF1 ------   ccctagatttcctgttcaagctcaagaccgtacaaaactttggaactcatgtaagaaacagtacacgtttttttttttgtttcttcttcagtccggatta  391300                                                                                      --------->ARR14(1)                                                                                     <---------ARR14(2)                                                                                     --------->ARR14(2)                                            <-----------GT1                          <---------GLK1(2)                                     --------->TOE2(3)                         <-----------GT1 ------>YAB1                         --------->TOE1(3)            <----------DOF2 <---------HSFB2a(2) ------YAB1                       <-----------GT1               <---------TOE1(2) --------->HSFB2a(2) --->YAB1                       --------->AHL20(2)             ------>ZmHOX2a(1) <---------LBD16   taagaattttgtcgattgaagaaaacaggctaaattaaaccctaattttctctcttagacaattcctactttctctccatttttctggattcgctctcgt  391400                                                                                 <------MYB83                                                                                 <------MYB46(1)                                                               <---------At4g35610                 <-----------GT1                              --------------->AGL15      <---------ARR14(2)                            <---------MYB52(1)     <-------TEIL      --------->ARR14(2)                     <---------ICU4   <---------------AGL15     <------ZmHOX2a(1)  <---------AHL20(2)  --------->ICU4   <-----------------AGL2     <----------DOF2 ---------->DOF2--------->AHL20(2)  <----------DOF2<---------DAG2       --------->CCA1(2)   tttaaaaggattcagaaattaactatattatttgaattcttttgccataattcccttatgttttctgctaatggatatacatttggtcttctttctgtat  391500                                                                             --------->ANAC58                                                                             --------->ANAC58                                                                            --------->SPL7                                                                         ------>NtERF2                                                                       --------->ATERF1(1)                                                                       --------->RAP2.3(1)                                                                       <------NtERF2 <---------TGA1a                                                                      <---------DEAR4(2)                                                                      <---------RRTF1(1)                                                                      <---------ORA47(2)                                                                      <---------RAP2.3(1)                                                                      <---------ERF1 --------->O2                                                                      ------>NtERF2  <---------ANAC46                                                                      <---------RAP2.6(1)             --------->HSFB2a(2)                                      <---------ATERF1(1)          ------>ZmHOX2a(2)                                          --------->ALFIN1<---------O2         <------ZmHOX2a(2)                                           <---------RRTF1(3)        <---------ARR11(3)                                           <---------RAP2.3(3)        <---------ARR14(3)                                           <---------RRTF1(2)        --------->ARR11(3)         <---------CCA1(2)                 <---------DEAR3(1)        --------->ARR14(3)     <---------ARR11(3)                    <---------RAP2.3(2)        <---------AGP1         --------->ARR11(3)                    <---------ATERF1(2)            -        <---------ARR14(2)     <---------ARR14(2)                    --------->ATERF1(2)        -----        --------->ARR14(2)     --------->ARR14(2)                   <---------ABI4(1)===============bZIP_DOF       --------->RVE1(1)     ------->TEIL        <-------TEIL       --------->ATERF1(1)  ---------->DOF2    ---------->DOF2       <---------YAB1   ---------->DOF2         <---------ATERF1(1) ----------->HVH21 --------->CCA1(2)     --------->ICU4 <---------ANAC46           <-----------RAV1(2) <---------ANAC55(2)   tagatataaagatctcgagaatagcattatgaatatcgtctcttggaaagatgcaaacgacgaagttgcaggcggcgctacgacaagacgtgaaagagaa  391600  Previous    Next  AGI:  At3g02150.1    Description:  PTF1 (PLASTID TRANSCRIPTION FACTOR 1); transcription factor. similar to TCP5 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 5), transcription factor [Arabidopsis thaliana] (TAIR:AT5G60970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49166.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79810.1); contains InterPro domain Transcription factor, TCP (InterPro:IPR005333) Range:  from: 391064    to: 392765    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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