Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         <---------ALFIN1                                                                     <---------ALFIN1                                                                  -------->P                                                                <---------MYB111(1)                                                                <---------MYB52(2)                                                               --------->At4g35610                       <------NtERF2                           --------->ZAT2                      ------>NtERF2                            <---------At4g35610                   <---------MYB46(3)                       --------->At4g35610                  <---------DEAR3(1)                        <---------At4g35610                 --------->At4g35610      ------>ZmHOX2a(1) <---------ZAT2      <---------REM1(2)   - ---WOX13(1)    ------->GAMYB   ------>ZmHOX2a(1)           --------->ZAT2    --------->ETT(2)      < >ATHB12       --------->MYB46(3)   <---------ICU4  <----------DOF2 --------->MYB46(3)       <-------   catcaacttaagtttcaacagcggtggcattttcctaatacttcctctcttcttcttttcgcagcagctacccacacttgtctacatgcttcttcttatc  358600                                                                                          ------>MYB83                                                                                       --------->MYB46(3)                                                                                       <---------MYB55(2)                                                                                      --------->ANAC58                                                                                      --------->ANAC58                                                                                     --------->WOX13(1)     <---------YAB1              <-------TEIL                                       --------->MYB46(3)     ----------->GT1  <---------GLK1(1)                                         <------ZmHOX2a(2)  <---------YAB1  --------->ANAC58                --------->YAB1               --------->ARR11(3)  --------->ICU4  --------->ANAC46         <------NtERF2                       <---------ARR11(3) -------->YAB1    --------->ANAC58   <-----------RAV1(2)                <---------ANAC46  ------>MYB46(1) ---------At4g35610   --------->GLK1(1)--------->ZAT2--------->MYB52(1)<---------TOE2(3)------->GAMYB --CCA1(2)      --------->MYB52(1) ----------->RAV1(1)               ----------->HVH21-------->P   tctgatgatgaaaaatgaaaacggaattccaaagatgcaacaggtggcataagcataacgctgggccatatttgacgttgagatcatcaaccaactacga  358700                                                                       <---------ICU4                                                                       --------->ATHB51                                                                      <---------YAB1              <---------GLK1(1)                <---------ZAT6       --------->YAB1              --------->GLK1(1)                ----------->GT1     ------->TEIL          --------->HSFB2a(2)         --------->GLK1(1)   --------->GLK1(1)                ----------          <---------HSFB2a(2)    <---------ANAC46         <---------GLK1(1)           ----------->GT1   gttgggaaagttttggaaatctatatgtgtatattgtgggaattcaatagtgtaagaaggaaatctatgaacataattgtttatggctcagtaaaaagcc  358800                                                                                                    -                                                                                                   <-                                                                                                   --                                                  --------->ATHB51                                 <-                          ----------->GT1         <---------ICU4                                   <-                          <---------ZAT6         <---------YAB1                                   <--                    <---------AHL20(2)         --------->YAB1                                   -----                   --------->AHL20(2)         ------->TEIL                                  <--------                   <---------AHL20(2)<---------GLK1(1)                ---------->DOF2      <---------CCA1(2) >DOF2    ------>ZmHOX2a(1)          --------->GLK1(1)           ----------->GT1         ------>ZmHOX2a(1)   catttagatgtcctatgggaatttaatagtgtaagaaggaaatctatgaacataattgtttatggcccagtaaaaagcccatttagatgtcctatatcct  358900                                         ================================bZIP_DOF                                         --------->TGA1a                                       <---------ALFIN1                                      --------->DEAR3(1)                                      <---------ZAT18                                     --------->ATERF1(1)                                   --------->ARR14(2)                                     <------NtERF2                                         <---------ARR14(2)                                    --------->ABI4(1)                                      ------->TEIL            <---------ANAC58        ------>NtERF2                                          <---------ARR11(1)       <------------CBF             <---------ATERF1(1)                                    --------->GLK1(2)    ------------>CBF               --------->RAP2.3(3)                                     <---------  --------->PCF2                   --------->RAP2.3(2)                                    <---------CCA1(2)  ------>NtERF2                    --------->DEAR3(1)                                     <---------ARR14(1)  <---------TCP16(1)               <---------ATERF1(2)       <---------DAG2--------->GLK1(2) -------->LBD16                    --------->RAP2.6(2)    *TSS<----------DOF2  ------>ZmHOX2a(1) --------ANAC58                    --------->ATERF1(2) --------->ARR14(2)  --------->ARR14(2) ------->HSFB2a(2)                --------->RAP2.3(1)  ------>MYB83        --------->ARR11(3)      <- --------HSFB2a(2)                --------->ORA47(2)   ------>MYB46(1)     <---------ARR11(3)      <- --------ANAC58                   --------->ERF1  <-----------GT1    ------>ZmHOX2a(2)  <---------ANAC58 -------LBD16                     --------->ATERF1(1) --------->WOX13(1)   <---------ARR14(2)      <- ->ZmHOX2a(1)                     --------->DEAR4(2)------------>CBF =================HOX2a_HOX2a  -- -ARR11(3)  <---------ANAC58     <---------ATERF1(1)--------->MYB46(3)----------->GT1   <---------ANAC58   tccgggcccaattgtcttgttcatcatcttcgtctcgccgcccacttgcgattaaccaatccacctttcgatcggaaaatccttctgtttgcgaatctat  359000                                                                                       <------MYB46(1)                                                                                       --------->ANAC55(2)                                                        =================RAV           <---------ANAC55(2)      <---------ARR11(3)                                <-----------RAV1(1)            <------MYB83 <      --------->ARR11(3)                            <---------ARR11(3)                --------->MYB111(1)     <---------CCA1(2)                              --------->ARR11(3)                --------->MYB46(2) --ARR10                                           <---------GLK1(1)                <---------MYB52(1) --------ANAC46                                    <---------CCA1(2)             ------->MYC3    <--- --------ANAC58                                <---------WOX13(1)   <---------GLK1(1) --------->MYB59 --------ANAC58    --------->ATHB12         <---------YAB1          --------->GLK1(1)<---------MYB55(1) --------->GT1    <---------YAB1            <---------TOE2(3)<-----------RAV1(2) <-------MYC3<-------   tgggtatatatctctccttgatgatttgatttgattctattgcattgagattgatatcttgttgcaggggaactctggttccatgtgttaggtattttcc  359100                                                               <---------ALFIN1                                                               --------->ANAC46                                                              --------->LBD16                                                             --------->ANAC58       <---------MYB59                                       --------->ANAC58   <---------ETT(2)                                        --------->SPL7                   ---------   --------->DEAR3(1)                                    <-----------HVH21               ------>MYB83   --------->WRKY12                   --------->YAB1     <---------SPL7                  ------>MYB46(1)   --------->WRKY38(1)               --------->ICU4     <---------ANAC58               <---------MYB59   --------->ETT(2)              <---------YAB1         <---------ANAC58               <---------MYB111(1) ---------ANAC46              --------->GLK1(2)        --------->ATERF1(1)         <---------ZAT18 <- -------DOF2          <---------AtLEC2<---------ICU4   <------NtERF2             --------------->AtSPL8 ----GT1    <-------TEIL     <---------GLK1(2)       <---------DEAR3(1)   <--------P ------->TEIL  --   tttcgtcgacctgattcatcttgtgcatgtcgattctgaataatgaacgaagaaggctgcgtcccgcacaactctggttagtctgtgtacctaatagtaa  359200                                <----------DOF2                              ------>NtERF2                             --------->DEAR3(1)                             --------->RAP2.3(2)               <---------At4g35610                                                                 --               --------->At4g35610                                                                <--           --------->ANAC46 --------->RAP2.3(1)                                                   ---         <---------ALFIN1  --------->LBD16                ----------->GT1                        <---     ------->GAMYB         ------>NtERF2              --------->ARR11(3)                     <------- >YAB1--------->ANAC46    --------->ANAC46       <---------REM1(1)               ---------->DOF2 <--- --------ANAC55(2)        ------->GAMYB       <-----------RAV1(1)              <------ZmHOX2a(2)<---- ------->ANAC55(2)       --------->MYB46(3) <----------DOF2        ---------->DOF2        <---------ALFIN1   ttcgtaaccctccacagagcttactcatccgccgcttttgtattctctttgttgtagatgttgttaaacaaaagtctatagatcaaagagcccctctttc  359300                                                                    <---------At4g35610                                                               <---------ANAC46                                                               <---------ANAC58                                                               <---------ANAC58                                                               --------->TGA2(1)                                                               --------->bZIP60(1)                                                               --------->TGA1a                                                               <---------TGA1a                                                               --------->O2                                                          --------->YAB1                                                          <---------ICU4                                                <---------bZIP60(2) --------->At4g35610                                                <---------bZIP60(1) --------->ZAT14     --------->TOE2(3)                          <---------TGA1a<---------O2     <---------MYB59                            --------->bZIP60(1) <---------ZAT14  --------->ARR14(2)             <---------ANAC46        <---------ATHB12                      ------  <---------ARR14(2)       <---------MYB52(1)   =========================bZIP_bZIP     --------->ANAC58 ------->LBD16            ----------------------->TaNAC69(2)   <---------bZIP60(2) --------->ANAC58 -------LBD16            <---------MYB46(3)     --------->TGA1a<---------bZIP60(1) --------->ANAC46 ------>LBD16       --------->ZAT14             --------->O2  <-----------------------TaNAC69(2) ------LBD16        <---------ZAT14             <---------O2----------->TGA1 <---------ANAC46  ------ ---DOF2            --------->At4g35610      ----------->TGA1<---------TGA2(2)     --------->ANAC58 ------ANAC46    --------->At4g35610         ----------->HVH21----------->STF1 <---------ZAT6-------- -----LBD16      <---------At4g35610  <-------TEIL       --------->ICU4------>NtERF2   --------->ANAC58   cggggaacctaaatgtgttatctgcagtcgttatggtgagtacatatgtgacgagaccaatgatgacgtctgcagcctcgagtgtaagcaagcactcctg  359400                                                                ------>ZmHOX2a(2)                                                               <------ZmHOX2a(2)                                     <---------ANAC58         <-----------ARR10                                 <---------At4g35610          --------->ARR14(3)                                 --------->At4g35610          <---------ARR14(3)                               <-----------RAV1(2)            <---------ARR14(2)                             ----------->RAV1(1)              --------->ARR14(2)                          --------->ANAC46                    <---------ARR11(3)                          ------>ZmHOX2a(1)                   --------->ARR11(3)                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)  <------ZmHOX2a(1)                        <---------ANAC58                     <---------GLK1(2)     ----------->HVH21  =================RAV               --------->LBD16--------->ANAC46 --->LBD16              <---------ANAC58  <----------DOF2  <---------TOE1(2) >ZmHOX2a(1)            ----------->RAV1(2)               <---------LBD16<---------TOE1(2) --->RAV1(2)          <-----------GT1<---------ANAC58     <-----------RAV1(2)                  ------   agaagggttgacagcgctagagtttttcctgccacagatgagtgcttctatgttagagacccaggatcttcttcccacgatgctcaactacttagaagaa  359500  Previous    Next  AGI:  At3g02060.1    Description:  DEAD/DEAH box helicase, putative. similar to ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT2G01440.1); similar to CarD-like transcriptional regulator family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94063.2); similar to CarD-like transcriptional regulator family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94062.2); similar to hypothetical protein OsJ_032804 [Oryza sativa (japonica cultivar-group)] (GB:EAZ18595.1); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contains Range:  from: 354367    to: 358814    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g02065.1    Description:  DEAD/DEAH box helicase family protein. Identical to DEAD-box ATP-dependent RNA helicase 41 (RH41) [Arabidopsis Thaliana] (GB:Q3EBD3;GB:Q8VZ85); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT2G42520.1); similar to hypothetical protein OsJ_005619 [Oryza sativa (japonica cultivar-group)] (GB:EAZ22136.1); similar to DEAD-box ATP-dependent RNA helicase 41 (GB:Q0E2Z7); similar to hypothetical protein OsI_006146 [Oryza sativa (indica cultivar-group)] (GB:EAY84913.1); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro: Range:  from: 358958    to: 360896    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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