Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            --------->ALFIN1                                                                         <-------PIF5                                                                         <-------MYC2                                                                         ------->MYC2                                                                         ------->MYC3                                                                         ------->PIF5                                                                         <-------MYC3                                                                        --------->TGA1a                                                                        <---------ANAC55(2)                                                                        <---------ANAC46                                                                        --------->ANAC55(2)                                                                        --------->O2                                                                        <---------bZIP60(2)                                                                        <---------TGA1a                                                                ------>NtERF2                                                                <---------ATERF1(1)                                                                <---------ERF1                                                               --------->ATERF1(2)                                                               <---------DEAR3(1)                                                               <---------RAP2.6(2)                                                               <---------RAP2.3(2)                                                               <---------RRTF1(2)                                                              <---------ANAC58                                                     ------->MYC3       <---------ANAC58                                                     ------->MYC4       <---------ANAC58                                                     <-------MYC3       <---------O2                                                     <-------PIF5       =============================                                                     ------->PIF5      ------------>OsbHLH66                                                     ------->MYC2   <-----------HVH21                                                     <-------MYC4--------->ATERF1(1)                                                     <-------MYC2<------NtERF2                                                    <---------TGA1a<---------DEAR3(2)                                                    <---------O2<---------RAP2.3(1)                                                    --------->TGA1a<---------MYB46(3)                                                    --------->PIF3(3) <-------------DYT1                                                    --------->O2--------->LBD16                                               --------->ANAC58<---------DREB2C(2)                                               --------->ANAC58<---------RAP2.3(3)                                               --------->ANAC46<---------ATERF1(2)                                          --------->MYB59     <---------ANAC58       ------>MYB46(1)                                   <-----------------AGL1     <---------LBD16      <---------MYB59                --------->LBD16  <---------WRKY12   <---------PIF3(3)----------->HVH21  ----------->GT1 ->TOE2(3)    <---------LBD16  <-----------HVH21  <---------ALFIN1<---------DEAR3(1) ------>MYB83  --   acagtttttttttttttgcgcaaaataagaaaatgtcaacgaattaggcaccccacgtggtattgccggcggtcacgtggctgaaccaaattgaaaaaaa  349600                            <---------SPL7                          <------NtERF2                          ------>NtERF2                               --------->TOE1(3)                         --------->LBD16                       --------->AHL20(2)                         <---------RAP2.3(1)                 <---------ANAC55(2)                        <---------RAP2.6(2)                  ----------->GT1     --------->ARR14(2)          <------ZmHOX2a(2)--------->DEAR3(1)              --------->ICU4        <---------ARR14(2) =========bZIP_DOF      <---------DEAR3(1)          ---------->DOF2  ----------->RAV1(2) --------->DAG2 -------->DOF2         <---------LBD16         <------ZmHOX2a(1)    --------->MYB52(1)  ---------->DOF2   aaaaagaagccgatcgaaactcgaatgcggcgaaccgagagcgaagagaggattgaaagaaataagtaaatacctgaacatcgaattcgataaagtcgag  349700                                                                    --------->ATERF1(1)                                                                   <---------ATERF1(1)                                                                   ------>NtERF2                                                                <---------ATERF1(1)                                                                --------->LBD16                                                               --------->TOE1(2)                                                              <---------LBD16                                                              ------>ZmHOX2a(2)                                                             --------->CCA1(2)                                                             --------->ARR14(1)                                                            <---------ARR14(2)                                                            --------->ARR14(2)                                                            --------->AGP1                                                            --------->ARR11(1)                                                            --------->ARR11(3)           --------->ARR14(2)                                                          ----------->ARR10           <---------ANAC58                                                       --------->TOE1(2)              <---------ANAC55(1)                                                       --------->TOE1(3)              <---------ANAC46                                                       --------->TOE2(3) ----------->RAV1(1)                  ---------->DOF2             --------->At4g35610 --------->DEAR3(1)  <---------ANAC58               <----------DOF2                <---------At4g35610 ----------->HVH21   <---------bZIP60(2)             <------NtERF2 <------ZmHOX2a(1)  <---------ZAT14<------ZmHOX2a(2)  <-------TEIL ------>ZmHOX2a(1)            --------->RAP2.6(2)  <---------GLK1(1)   --------->GLK1(2)  ----------->HVH21<---------ARR14(2)   agggaattttgaagcggcattaaaggagaggatggagttctccttgagagcagagaaccttagatccggcgactgcgacatgttcatgccgtgtcctcta  349800        --------->AtMYB61      ----------->RAV1(1)     ------->GAMYB     --------->AtMYB61    <---------MYB55(2)                                                                              <    <---------MYB111(2)                                                                             <    --------->MYB46(3)              <------ZmHOX2a(1)     <---------LBD16  <---------ANAC58         <   ------>MYB83               <---------ANAC58       <---------GLK1(2)     <---------ANAC58   -------   ------>MYB46(1)            <---------ANAC58    <---------ANAC46<---------AtMYB61          <-------   -------->P             <----------DOF2      ----------->HVH21  --------->ALFIN1     --------->LBD16   tggccaaccaccacaaacttgttattcgctttgcgagaggagcaaatgagcgacgggttctcagggaagtggtcgaggcttggcacttccgagacatgaa  349900                                   --------->DAG2                             ----------->GT1                           ---------->DOF2                        <---------HSFB2a(2)                        --------->HSFB2a(2)                  --------------->AGL15                  <---------------AGL15 <----------DOF2 <-----------------AGL3                                                        ------ ---------ANAC46 <-----------------AGL2                   <----------DOF2          <---------ANAC46 ---------ANAC58 ----------------->AGL3               <----------DOF2        <---------TOE2(3)<------ ---------ANAC58 ----------------->AGL2       <----------DOF2             <---------WOX13(1)  ------- -->ATHB12       ==================================================================================== --YAB1        <-----------GT1    ---------->DOF2 <----------DOF2  ------>ZmHOX2a(1)   <------ZmHOX2a(1)   tggcttttagagacatatttctatttttagaaagaaaaaagggctcgtctttctttctttctttccttcctgtgagattgatgttgtgaggagagggata  350000                                                                                               <-----                                                                                         <---------O2                                                                                         ============                                                                                         --------->O2                                                                                         ============                                                                                         --------->ANAC58                                                                                         --------->TGA1a                                                                                         <---------TGA1a                                                                                         <---------ANAC55(2)                                                                                         --------->ANAC46                                                                                         --------->ANAC58                                                                                         --------->ANAC55(2)                                                                        --------->HSFB2a(1)   -------                                                                        <---------HSFB2a(1)   <------                                                                        <----------TaMYB80 --------->TGA2(2)                                                                        <---------KAN4(1)<---------bZIP60(1)                                                                        --------->KAN4(1)--------->bZIP60(2)                                                                 ------>ZmHOX2a(2)      ------>NtERF2                 *TSS                                           <------ZmHOX2a(2)       <-----------STF1               <---------------AGL15                           --------->ARR11(3)      <---------ALFIN1               ======================================================================================          <----------DOF2                                      <---------ARR11(3)   =================       ------>NtERF2                                           <---------ARR14(2)   --------->ANAC58      <---------RAP2.3(3)  >>>>>>>>>TBF1                       --------->ARR14(2)   --------->ANAC58   --------->ALFIN1 ---------->DOF2                     <---------YAB1 ---------->TaMYB80--------->bZIP60(1) --->CCA1(2)   --------------->AGL15>>>>>>>>>TBF1=======================HOX2a_HOX2a ------>ZmHOX2a(2) ---ARR14(2)  <---------ANAC58   >>>>>>>>>TBF1   <------ZmHOX2a(1)     <---------KAN4(2)<-----------bZIP910(1) -->ARR14(2)  <---------ANAC58>>>>>>>>>TBF1      ======================HOX2a_HOX2a--------->ARR14(2) ==============================MADS_MADS  ---------->DOF2--------->ATHB12--------->KAN4(2)<----------   tgggtttgggggctttgcttaaaaaagaagaagaagaagaagaataaagaaggagaagatgatgggatcttggaatattctttggatcgccacgtcatca  350100     --------->YAB1                  --------->KAN4(2) ==========================================MADS_MADS <---------------AGL15              <---------KAN4(1) ------>ZmHOX2a(1)                  <----------TaMYB80 ----ICU4                           <---------GLK1(1)                                             --- ===============MYC_MYB            --------->ARR14(2)                                             <-- =======================================bZIP_DOF                                            <-------- -->ICU4                           <---------ARR14(2)                                      ---------- ---YAB1   --------->YAB1<-----------------AGL1               <--------P                 --------->ALFIN1 ================MADS_MADS   <----------DOF2               ------>ZmHOX2a(1)          <-----------RAV1(1) =======HOX2a_HOX2a      <-----------------AG       <----------DOF2                   ------>ZmHOX2a(1) -TGA1  ------->GAMYB   <-----------GT1        <---------ALFIN1                     ----------->RAV1(2)   ttcctaataacagtcaaaatcgaaattatcccttttggatattccctcccctctctttttcctggttgtctccctctctcttgggctcctggtgggcctt  350200                                                                                    <---------MYB46(3)                                                                                    <------MYB46(1)                                                                                    <------MYB83                                                                                  <---------WOX13(1)                                                   <---------ALFIN1       <---------ANAC55(1)              <---------GLK1(1)                  <-----------GT1          <---------ANAC58 ------>At4g35610                          <---------WOX13(1)             <---------ANAC46      <---- -------At4g35610       <---------ZAT6   --------->ATHB12                 <---------ANAC58    ------- -PCF2<---------HSFB2a(2)               <---------YAB1                   --------->MYB52(2)  <------- ->TCP11(1)   --------->GLK1(1)       --------->YAB1              <---------ICU4 <---------ARR14(2)   agctctctctagatggaaatcgaatagagttagccatcaatgttgattgattcacaccttcgttctaatctttgttacttgtggattggttatctattat  350300                      --------->KAN4(2)                     <---------HSFB2a(1)                     <----------TaMYB80                     --------->HSFB2a(1)                     --------->HSFC1(2)                     --------->KAN4(1)                     <---------KAN4(1)                    <---------ARR14(2)                    --------->ARR14(2)                    <---------KAN4(2)                    ---------->TaMYB80                  --------->LBD16        --------->YAB1          <---------AHL20(1)            <<<<<<<<<ARR1                                             <-- -----YAB1--------->AHL20(2)            <<<<<<<<<ARR2    ------>ZmHOX2a(1)                        --- -->YAB1  <---------AHL20(2)      <---------ARR14(2)  ------>ZmHOX2a(1)                     <-------- --YAB1  --------->AHL20(2)---------->DOF2     --------->ZAT14                    --------->TOE2(3)   aaatgcttccattaaatttccgaatattccaaagcatatacaatcttactaaactcctcctattcgacagacacatcttctctaccttgataagctttac  350400                                                                                           --------->ATHB12                                                                                           --------->YAB1                                                                                          <---------YAB1                                                                                       ------>ZmHOX2a(2)                                                                                       ==============                                                                                      <------ZmHOX2a(2)                                                          --------->ARR11(3)          --------->CCA1(2)                              <---------AHL20(2)          <---------ARR11(3)          ===============                             --------->AHL20(2)    <---------YAB1                    <---------AGP1                             <---------AHL20(2)    <---------TOE1(3)                 --------->AGP1                  --------->ANAC46                 <---------TOE2(3)                 --------->ARR11(3)   ------>ZmHOX2a(1)   <----------DOF2       <----------DOF2                         <---------ARR14(2) -------At4g35610 --------->ANAC58           <---------DAG2--------->CCA1(2)         --------->ARR14(2) ------>At4g35610 --------->ANAC58     --------------->AtSPL8                        <---------ARR11(3) --DOF2         <-----------GT1       <---------ANAC46--------->CCA1(2)       <---------ZAT6      <--   agctcctactacatattatcacgccctttgattaaatgggccttgtactttttaagataagatatagtgtctgtatattagtgacaagatctatgatggg  350500  Previous    Next  AGI:  At3g02040.1    Description:  SRG3 (SENESCENCE-RELATED GENE 3); glycerophosphodiester phosphodiesterase. similar to glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] (TAIR:AT5G41080.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49062.1); contains InterPro domain Glycerophosphoryl diester phosphodiesterase; (InterPro:IPR004129) Range:  from: 348174    to: 350017    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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