Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   <---                                                 --------->WRKY12                    --------->ATHB12                                                 ----------->HVH21                   <---------ICU4                                       ----------->HVH21                            --------->ICU4          --------->ANAC46           --------->ALFIN1                 <-------TEIL  <---------YAB1   tttgtagcatctactcaatttctaaattgcatagcataggtgtgacactctctgaccgtaatggagaatagatgcaatgggaagtgatcattgttccaaa  285400                                           --------->ALFIN1                                          --------->TOE1(2)                                          ------->MYC3                     ----------->GT1                                    <---------MYB59                       <---------TOE1(3)                                  <---------ARR11(3)             --------->YAB1                       <---------ANAC55(2)--------->TOE2(2) <--------P    <---------TOE2(3)                       --------->ANAC46   <-------MYC3      <---------WOX13(1)                      - ------ATHB12  <-------TEIL       --------->ARR11(3)      <---------MYB46(3)                       --   tgattttaagtagaaaatgcataacacgtagaagaagacctaaacgtgggaatcgctcactggttgatagtaatctaaggtgatttggctaaaactgatc  285500                                                                          ----------->RAV1(2)                                                                      <---------ZAT2                                                                      --------->At4g35610                                                                      --------->ZAT2                                                                      <---------At4g35610                                                                   <---------At4g35610                                                                   --------->ZAT2                                        <----------DOF2            --------->At4g35610                                       --------->TOE2(3)          ====================RAV          --------->CCA1(2)         <-----------GT1               ----------->RAV1(1)         --------->ARR14(2)     --------->AHL20(2)              --------->ZAT2         <---------ARR14(2)  <--------HAHB4                     <---------At4g35610                 <         <---------ARR11(3)  --------->YAB1                     <---------ZAT2                  <----         --------->ARR11(1)  <---------ICU4                     <------NtERF2          xxxxxxxxxxxxxx         --------->ARR11(3) --------->ICU4                      --------->At4g35610 --------->DEAR3(1) -------->DAG2              <---------ATHB12                   ----------->RAV1(1) <------NtERF2----- -------->DOF2              <---------YAB1                     =======================RAV       <----   aaaaagctggagatatggaaggaagaagtaatcattttatacctttaagttgcccttgaatgaggcagcagcagcagcctgagtcgccatcgttcttcag  285600  <---------MYB46(3) ---------MYB52(1)                                       <---------ANAC46 -----ZAT2                                              <-------TEIL                                - xxxxxx>smallRNA(se3)              ----------->GT1    --------->ARR14(2)                            - ---->At4g35610                   --------->GLK1(2)   <---------GLK1(2)                 <---------GLK1(2) -----At4g35610           --------->MYB52(1)          <---------ARR14(2)         --------->WRKY38(1)<   ctgtttgttagacaaaaaacaaaaaacaaaactgagaatgtgatttcagttatacagattcgtatggagaagtctgcaacgaattgaccagaatcaccag  285700                                               --------->ALFIN1                                              <-------GAMYB                                              <------NtERF2             <---------ZAT2                                            <---------AtMYB61           --------->At4g35610                                            <---------ANAC46            <---------At4g35610                                            --------->ALFIN1          --------->ZAT18                                            <---------DREB2C(2)    *TSS --------->ZAT2                                           <------NtERF2          <------ZmHOX2a(1)                              --------->LBD16<---------DEAR3(2)<---------HSFB2a(2)                             --------->HSFB2a(2)             <------ZmHOX2a(2)                             <---------ANAC46<---------MYB46(3)--------->HSFB2a(2)                             --------->ATERF1(2)            <---------AGP1                <---------LBD16          <---------DEAR3(1) <---------ARR11(3)               --------->MYB52(1)        <---------RAP2.3(2)--------->ARR14(2)             --------->ARR14(2)         --------->At4g35610 --------->ARR11(3)                      -             <---------ARR14(2)<------NtERF2<---------DEAR3(1)------>ZmHOX2a(2)                     <            <-----------HVH21<---------HSFB2a(2)            --------->AGP1----------->GT1         <--        --------->MYB52(1)   <---------ATERF1(2)            <---------ARR14(2)                    ---      ----------->HVH21     <---------LBD16<---------ABI4(1)--------->ARR14(3)             <---------HSFB2a(2) -------->CCA1(2) --------->LBD16  ----------->HVH21      ----------->ARR10                --------->HSFB2a(2) -------->At4g35610       --------->ALFIN1<---------RAP2.3(1)--------->CCA1(2)     --------->MYB52(1) ---------At4g35610 ----------->HVH21   <---------At4g35610 <---------ARR14(3)    ---------->DOF2<---   agagatgactcaccggttaccggagacagtgccggaagtgacagcggcggtggaaatgggaagatctaggagggagctgtataacaaagggttttagaag  285800                                                                              *TSS      <----------DOF2                                                       <-----------GT1 -------->ATERF1(1)                                                     <---------AHL20(2) ------NtERF2                                 --------->AHL20(2)    <---------AHL20(2)              - -------DEAR3(1)                ---------->DOF2        <---------TOE2(3)<---------YAB1             <- ------>ALFIN1             ---------->DOF2    <-----------TBP      <---------AHL20(2)      <---------DEAR3(2) ------LBD16         <---------YAB1         <----------DOF2        --------->AHL20(2)    <------NtERF2   gcggagggctattttggtattttctcattaaaagaaaaggaaatgactttatatatgaaggaaactaaattttttttattacatttcagtcgtcgattcg  285900                                                                     ---------->DOF2                                                                ------>ZmHOX2a(1)                                  ---------->DOF2        <---------ARR14(2)                               <---------ATHB12       --------->ANAC55(2)                             --------->WOX13(1)       <---------ANAC58                      --------->ANAC46                <---------ANAC55(1)                      --------->ANAC58                <---------ANAC58                      --------->ANAC58                <---------ANAC55(2)--------->TOE1(3)        >>>                      --------->ANAC55(2)<---------ANAC58<-----------ARR10               >>>>>>>>>TBF1                      --------->ANAC55(1)<---------ANAC58--------->ARR14(2)    ---------->DOF2 >>>>>>         ----------------------->TaNAC69(2)       <---------ANAC58 ------>ZmHOX2a(1)   --------------    <---------TOE1(2)<---------LBD16    <-------TEIL  <---------ANAC46   --------->TOE2(3)  >>>>>>>>>TBF1 -------->ALFIN1   <---------REM1(2)--------->DAG2<---------ANAC58--------->TOE2(3)   >>>>>>>>>TBF1 ----------HVH21 --------->ZAT14--------->YAB1    <XXXXXXXXXXXXXXXXXXXXMIR835-3P     xxxxxxxxxxxxxxxx   aggtcgagggttttagctctatacacggaatcaatcaaaaggtacttgtttttcttgcgtgtcttcctccttaaacctcagaaaagaagaagaagaagaa  286000                                                                                       <---------HSFB2a(1)                                                                                       <---------HSFC1(2)                                                                                       --------->At4g35610                                                                                       --------->HSFC1(2)    ---------->DOF2                                                                    --------->HSFB2a(1) >>>>>>>>>TBF1                       <---------ANAC58                     <---------GLK1(1)   <------ >>>>>>TBF1                          <---------ANAC58                   <---------ANAC58     <------- >>>TBF1        <----------DOF2     <-------TEIL                        <---------ANAC58    <-------GAMYB ---------->ANAC81       --------->ATHB12                          --------->ATHB12    --------->ZAT2 xxxxxxx>smallRNA(se3)  --------->ICU4                        ---------->DOF2    --------->At4g35610   gaagaagaaagttgaagtctttagggatgatggctatgttcgtgagacgagctctatctagtcgtaacgcgattgggtttctcagaagaagctccgttgt  286100                                                            <------ZmHOX2a(2)                                                            --------->CCA1(2)                                                            --------->At4g35610                                                           --------->ARR14(3)                                             --------->ATHB12------>ZmHOX2a(2)                                            --------->ICU4 <---------ARR14(3)                                            <---------YAB1 --------->ARR14(2)                                          <---------ICU4   <---------ARR11(3)                      --                                          --------->YAB1   --------->ARR11(3)                     ---                                         --------->ICU4    <---------ARR14(2)                     <--                                --------->MYB46(3)         --------->AGP1                   ------>ZmHOX2a(1)       <---------ANAC55(2)     --------->ANAC58           --------->GLK1(1)                --------->TOE2(3)       --------->ANAC55(2)     --------->ANAC46           <---------GLK1(1)            <---------GLK1(1) ---MYB46(3)                   --------->ANAC58          ----------->ARR10             --------->GLK1(1) --MYB52(1)        ------>ZmHOX2a(1)     <---------YAB1 <------NtERF2                 --------->ARR14(2)   tgttcaatctcgtgatttctccttcatttcttcacccaatctcatgatgatgggaggccgagatctgcaattcgatttgtccatgcccgatttcctcaga  286200                                                                                              -------            <----------DOF2                                                      ------->TEIL<------- ------->GLK1(2)     ----------->GT1               <---------ICU4--------->WOX13(1)        --------->YAB1 ------>ARR14(2)    --------->DAG2                ------>ZmHOX2a(1)<---------ATHB12      <-----------GT1 -------GLK1(2)   ---------->DOF2            --------->KAN4(2) <---------YAB1   <---------CCA1(2)   gattctcgtcgaggctttgcaaaaggcaaaaaatcaagtatgttgtttattcctcatttccatttatcaatcactcgctcgtgaatcttattaacatgat  286300  Previous    Next  AGI:  At3g01790.1    Description:  ribosomal protein L13 family protein. similar to EMB1473 (EMBRYO DEFECTIVE 1473), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G78630.1); similar to unknown [Populus trichocarpa] (GB:ABK95352.1); contains InterPro domain Ribosomal protein L13, bacterial-type; (InterPro:IPR005823); contains InterPro domain Ribosomal protein L13; (InterPro:IPR005822) Range:  from: 283716    to: 285767    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g01800.1    Description:  ribosome recycling factor family protein / ribosome releasing factor family protein. similar to RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR) [Arabidopsis thaliana] (TAIR:AT3G63190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14593.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68423.1); contains InterPro domain Ribosome recycling factor; (InterPro:IPR002661); contains InterPro domain Ribosome recycling factor, bacterial-like; (InterPro:IPR015998) Range:  from: 285878    to: 287957    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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