Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  --------->ANAC55(1)                <---------ANAC55(2)                <---------ANAC55(1)       <------------MYB.PH3(1)       --------->ANAC58                 --------->MYB52(1)       <---------ANAC55(2)            <---------MYB59       --------->ANAC55(2)           --------->ANAC55(2)  ------>MYB83                     --------->ATHB12       --------->ANAC55(1)           <---------ANAC55(2)  ------>MYB46(1)                 <---------AHL20(2)       --------->ANAC58      ---------->DOF2            <---------MYB59<-------MYC3       <---------YAB1   <---------ALFIN1------->TEIL <---------------AtSPL8<---------At5g28300   <-----------RAV1(1)------ ----->ZAT6     --------->ANAC55(2) <-------TEIL     <-----------GT1   ------->MYC3  ------>ZmHOX2a(1)   cactcacacacgtataatacgtatgtagatgaaaagagtacataactgtttctatttaccgaacaaaataacatgtggatgtcgctcctcatattattga  258500                                                                    <---------ANAC58                                                                    <---------ANAC58                                                                <---------ANAC46                              --------->ANAC46                <---------MYB46(3)                              --------->ANAC58               <-----------RAV1(1)                              --------->ANAC58               <---------AtMYB61                        ------>ZmHOX2a(2)                  <-----------RAV1(1)                       <---------GLK1(1)                <----------DOF2    <---------ARR14(2)                       --------->GLK1(1)            ------->GAMYB<---------ZAT18   ------>ZmHOX2a(1)                       <------ZmHOX2a(2)           --------->MYB46(3)      <-----------GT1      <----------DOF2 --------->ARR11(3)           <---------MYB111(2)     --------->ARR14(2) --->ATHB12           <---------ARR11(3)<----------DOF2<---------DAG2      <---------ARR11(3)<-------   tttgtaatcttttatgcaatttgggatctctctcgccatctccttttgaatcaacaaccttttgtggtgggcttgaatatccatcctctgtttttagatg  258600                                         <------ZmHOX2a(2)                                        <---------ARR11(3)                                    ===========================bZIP_DOF                              <---------HSFB2a(2)                              --------->HSFB2a(2)        ----------->TCP11(1)                         <---------HSFB2a(1)           --------->ALFIN1                         --------->HSFB2a(1)         --------->TGA1a                         --------->HSFC1(2)          <-----------RAV1(1)                       ========================================bZIP_DOF                       ---------->DOF2  --------->ARR11(3)<---------PCF2                            -                      <------ZmHOX2a(1)--------->YAB1<---------TGA1a                   --------->MYB52(2)                --------->MYB111(1) ---------->DOF2  <---------O2                      <---------MYB46(3)               <--------P<---------HSFC1(2)          --------->O2                     <---------TOE1(2)      <---------ZAT6  ==========================HOX2a_HOX2a                       <---------ATHB12  < --At4g35610   ================================================MYC_MYB <-------TEIL  <---------MYB52(1)   agtttttagtgtttgtggtaagtaggaaagttccaaaacaaagatcacacatctcatgtgggcctgaactaaattcatggcccaatcgtttgttcttaat  258700                --------->GLK1(1)                <------ZmHOX2a(2)                <---------GLK1(1)               --------->ARR14(2)               <---------ARR14(2)                <---------AHL20(1)               <---------ARR11(3)             --------->AHL20(2)               <---------AGP1                <---------AHL20(2)  --------->ZAT18               <-----------ARR10             --------->AHL20(2)  <---------ZAT18               --------->ARR11(3)    <-------TEIL--------->ARR11(3)            <---------TOE2(3)              <------ZmHOX2a(1)   <---------ANAC46             <---------At4g35610            <---------TOE2(3)    --------------->AtSPL8   --------->DAG2   --------->YAB1 -------->GLK1(1)         <----------DOF2   --------->AHL20(2) --------->At4g35610  --------->MYB52(1) ---------GLK1(1)------>ZmHOX2a(2)<---------ANAC55(2)    ---------->DOF2--------->HSFB2a(2)   agaaatccaatttttaggatctcgctatcttttgctacgtacaaaaattaatatatacaaaaagtagctcacttctaaaataaggctaatggatgcccat  258800                                                                                               <-----                                                                                         <---------HSFC1(2)                                                                                         --------->HSFC1(2)                                                                                      *TSS  ---------                                                                                   ----------->RAV1(2)                                                                                   <---------At4g35610                                                             <------------CBF      --------->At4g35610                                                 ----------->TBP ---------->ID1  --------->REM1(1)                       ------>ZmHOX2a(1)         <---------AHL20(2)           --------->TOE2(3)------                      --------->TOE2(3)          --------->AHL20(2) ------>ZmHOX2a(1)----------->HVH21   tttcttctcaaatccatcgattttcctaaaatttctcaaatttcaaaacatataaatccatctcattgtcctcttgttttccttcatctgaagcttctgc  258900                                                                                          --------->TGA1a                                                                                          ===========                                                                                   <---------ICU4                                                                                   --------->MYB52(1)                                                                                  <---------ATHB51                                                                                  <---------AHL20(2)                        <----------DOF2                                     ----------->GT1         -                  <-----------GT1                                        ----------->GT1  ===========                 --------->AHL20(1)                                     --------->DAG2    --------->ANAC58                 --------->ARR11(3)        ------>ZmHOX2a(1)           ---------->DOF2    <---------TGA1a ----ZAT14  --------->AHL20(1)         --------->AtMYB61               =============================bZIP_DOF >At4g35610 --------->AHL20(2)      <---------ALFIN1                --------->AHL20(2)    --------->O2 --->ZAT14  <---------AHL20(2)<----------DOF2                       <---------AHL20(2)    --------->ANAC58   agtattcaaacaaataaaatatactgctttagctttggacacctcctcttactaatctctataactatatttaaaaagtagaaaataatggcacgtctat  259000                                                                                ------>MYB83                                                                                ------>MYB46(1)                                                                       --------->ABI4(1)                                                                       ------>NtERF2                                                                      --------->DEAR3(1)                                                                      <---------ALFIN1                                                                      --------->DREB2C(2)                                                                      ------->GAMYB                                                                     --------->MYB46(3)       -------                                                                     --------->DEAR4(2)      <-------                                            --------->ABI4(1)       <---------ATERF1(1)      --------                                            --------->LBD16         ------>MYB46(1)          <-------                                            <---------ATERF1(1)     ------>MYB83-------->P  ---------                                           --------->ATERF1(2)     --------->MYB55(1)       -------->P                                           --------->RAP2.3(2)     <---------ALFIN1         ------>MYB83                                           --------->RAP2.3(3)     --------->ANAC46         ------>MYB46(1)                                           --------->DEAR3(1)     <---------MYB111(2)       ---------                                           <---------DEAR3(1)     <---------MYB111(1)   --------->ANAC46                                          --------->RAP2.3(1)     --------->MYB46(3) <---------ARR14(2)                                          --------->ORA47(2)      --------->DEAR3(1) --------->ARR14(2)                                          --------->DEAR4(2)      <---------MYB55(2)------>MYB46(1)                              --------->ATERF1(1)                --------->ANAC58   ------>MYB83                              <---------ABI4(2)     ------->TEIL --------->ANAC46 ------->GAMYB                              <---------PCF2------>NtERF2  --------->At4g35610<---------MYB46(2)                              --------->ZAT18<------NtERF2 <---------ZAT2     <---------MYB111(2)                         <---------ANAC58 --------->ERF1   <---------At4g35610<---------MYB55(2)                         <---------ANAC58 --------->ATERF1(1)    --------->ANAC58 --------->AtMYB61                         <---------ANAC46<---------ATERF1(1)    ------->TEIL  --------->MYB46(3)                   <----------DOF2       <---------RAP2.3(1)   <---------ALFIN1--------->MYB55(1)            <----------DOF2--------->ALFIN1<---------ATERF1(2)--------->At4g35610--------->MYB46(3) <---------ANAC46 <---------ANAC58      --------->ANAC46   --------->ZAT2     --------->DEAR3(1) ======================bZIP_DOF      <---------ARR14(2)    ----------->RAV1(2)<---------MYB111(1) --------->ID1    <---------ANAC58   --------->ARR14(2)<-----------HVH21     --------->MYB46(3) ======================bZIP_DOF  <------NtERF2--------->DEAR3(1)--------->PCF2--------->AtMYB61   ttgtcgtagttgcccttttggctttggccgtgggcaccgtattcgccgccgatgcaccttcagctgcacccaccgcctcaccaaccaaatccccaaccaa  259100                                  --------->ANAC58                                  --------->ANAC58                                <---------ALFIN1                               <---------SPL7                               <------NtERF2                               --------->ABI4(1)                               ------>NtERF2                               <---------ABI4(2)                              --------->RRTF1(2)                              --------->RAP2.3(2)                              --------->RAP2.6(2)                              --------->DEAR3(1)                             --------->ATERF1(1)                            ------>NtERF2                            --------->ABI4(1)                            <---------ATERF1(1)                           --------->RRTF1(3)                           --------->ANAC46                           --------->RRTF1(2)                           --------->RAP2.3(3)                           --------->RAP2.3(2)                           <---------ALFIN1                           --------->ATERF1(2)                           --------->RAP2.6(2)                           <---------DEAR3(1)                           --------->DEAR3(1)                          --------->ERF1                          --------->RAP2.3(1)                          --------->DEAR4(2)                          --------->RRTF1(1)                  --------->ARR14(2)                  <---------ARR14(2) ---------->DOF2             --------->ANAC46--------->RAP2.3(1)             --------->ANAC58--------->ORA47(2)                    -------->P             --------->ANAC58<------NtERF2                         ------>MYB46(1)       <---------At4g35610--------->RAP2.6(1)                      ------>MYB83       --------->At4g35610--------->ATERF1(1)                     <---------ALFIN1   <-----------RAV1(1)    --------->ORA47(2)                     --------->MYB46(3)   ------>ZmHOX2a(1)     <---------At4g35610                    --------->DEAR3(2)               ---- <---------At4g35610     <---------ATERF1(1)                   --------->PCF2                 <------ ----------->RAV1(2)     ------>NtERF2 --------->ANAC58       <---------ARR14(2)        --------->ZAT14 --------->At4g35610    --------->DEAR3(1)                    --------->ARR14(2)        <---------ZAT14 --------->ATERF1(1)    <---------ALFIN1                     <------ZmHOX2a(1)          <---------At4g35610 >GAMYB------>NtERF2  ------>ZmHOX2a(1)--------->ANAC58 <---------ANAC46----------->HVH21   --------- --ATHB12 <---------ZAT18--------->At4g35610           --------->At4g35610         --------->ZAT14 ->MYB46(3) ------->TEIL--------->ANAC46               <---------At4g35610         <---------ZAT14 --MYB55(2)<---------ALFIN1<---------ATERF1(2)     <-----------RAV1(1)----------->RAV1(2)  ------>NtERF2 >ANAC58  --------->ZAT14--------->ABI4(1)         ===============================RAV   --------->ZAT2 >ANAC58  <---------ZAT14--------->LBD16         ----------->RAV1(2)<---------ALFIN1    --------->At4g35610   ggctcctgccgctgcacccaaatcctccgccgccgcaccgaaagcatcatcccctgttgctgaggaacccacccctgaagacgactactctgcagccagc  259200                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                -----                                                                                                -----                                                                                                <----                                                                                               ------                     ------>MYB46(1)                                                           ------                     ------>MYB83                                                             <------                    <---------ALFIN1                                                          -------                    --------->MYB55(1)                                                        -------                   <---------MYB111(1)--------->ANAC58                                        -------                   <---------MYB111(2)--------->ANAC46                                        <------                   --------->DEAR3(1) --------->ANAC58                                       <-------                   --------->MYB46(3)--------->MYB46(3)                             --------->At4g35610                  --------->ANAC58 ------>NtERF2  --------->LBD16                   <---------At4g35610                  --------->DEAR3(2)<---------ALFIN1                         --------->ARR14(2)------            ------>NtERF2        --------->MYB46(3)                          <---------ARR14(2)------          <----------CDC5     ------>ZmHOX2a(1)  --------->LBD16           <---------SPL7   ---------         ------>NtERF2 --------->DEAR3(1)    -------->P                 ------>NtERF2       ---------         --------->LBD16<-----------HVH21    ------>MYB83              --------->DEAR3(1)   ---------        --------->DEAR3(1)--------->ARR14(2)------>ZmHOX2a(1)          ----------->HVH21    <--------  ----------->HVH21<---------MYB55(2)<---------MYB55(2)   <---------MYB52(1) --------->PCF2 ------->TEIL ------->RAV1(1)  --------->ANAC58<---------ALFIN1--------->ANAC46   ------>ZmHOX2a(1)----------->HVH21 ---ATERF1(1)    --------->PCF2--------->ANAC46 <---------LBD16  <---------ALFIN1   ----------->RAV1(2) >ATERF1(1)--------->DEAR3(1)<---------ALFIN1------>MYB46(1)  --------->PCF5 ------->TEIL<---------WOX13(1)   cccagtgactccgccgaggcacccaccgtctcctccccacccgctcctacccccgaagccgatggtccctcctccgacggaccctcatctgatggacccg  259300     ------>NtERF2    --------->DEAR3(1)   <------NtERF2   --------->ATERF1(1)   <----------CDC5  <---------ATERF1(1)  ------>NtERF2  --------->ABI4(1) --------->RAP2.3(2)                                                 <------NtERF2 <---------DEAR3(1)                                                  --------->RAP2.3(1) --------->RRTF1(2)                                                  --------->ATERF1(1) --------->RRTF1(3)                                                  <---------LBD16 --------->RAP2.3(3)                                                --------->ABI4(1) --------->RAP2.6(2)                                               --------->RRTF1(2) --------->DEAR3(1)                                                --------->RRTF1(3) --------->ATERF1(2)                                               --------->RAP2.3(2) <---------ATERF1(2)                                               --------->RAP2.3(3) -------->RAP2.6(1)                                                --------->ATERF1(2) -------->RAP2.3(1)                                                --------->DEAR3(1) -------->DEAR4(2)                                                <------NtERF2 -------->ERF1                                                    --------->ATERF1(1) -------->RRTF1(1)                                                --------->RRTF1(1) -------->ATERF1(1)                                               --------->RAP2.6(1) -------->ORA47(2)                                                --------->DEAR4(2) ------NtERF2                                                     --------->ORA47(2) --------DREB2C(1)                                               <---------ATERF1(1) --------At4g35610                                               <---------DEAR4(2) ------->At4g35610                                               <---------DREB2C(1) ---->NtERF2                                                     ------>NtERF2 ------->ABI4(1)                                                 <---------RAP2.3(1) --------DEAR4(2)                                                --------->At4g35610 --------RAP2.3(1)                                               <---------At4g35610 --------ATERF1(1)                                               --------->ABI4(1) ------>ANAC46                                                  --------->ANAC46 ------>RRTF1(2)                                                --------->RAP2.3(3) ------>DEAR3(1)                                                --------->RAP2.3(2) ------>RAP2.6(2)                                               <---------DEAR3(1) ------>RRTF1(3)                                                --------->DEAR3(1) -------DEAR3(1)                                                <---------ATERF1(2) ------>RAP2.3(2)                                               --------->ATERF1(2) -------ATERF1(2)                                              --------->ATERF1(1) ------>ATERF1(2)                                              <------NtERF2 ------>RAP2.3(3)                                              --------->ERF1 -------ALFIN1                                                 --------->ORA47(2) ----->RRTF1(1)                                                --------->RAP2.6(1) ----->ERF1                                                    --------->DEAR4(2) ----->ORA47(2)                                                --------->RRTF1(1) ----->RAP2.3(1)                                               --------->RAP2.3(1) ----->DEAR4(2)                                               ------>NtERF2 ----->RAP2.6(1)                                              <---------ATERF1(1) ----->ATERF1(1)                                              <---------RAP2.3(1) ---NtERF2                                                    <---------RRTF1(1) ---->LBD16               ------>NtERF2                   <-----------RAV1(1) ->NtERF2                <---------ALFIN1              <---------ALFIN1 -----ATERF1(1)         --------->ATERF1(1)           <------NtERF2<---------ATERF1(2) --->ANAC58            ------>NtERF2                 ------>NtERF2--------->RAP2.3(1) --->ANAC46            <---------RAP2.3(1)           <---------ATERF1(1) ---MYB55(2)          --------->PCF2                 --------->LBD16<---------ATERF1(1) -->ATERF1(1)         <---------PCF2                <---------DEAR3(1) -->DEAR3(2)          --------->bZIP60(1)           --------->ANAC46------>NtERF2 -->MYB46(3)          <---------bZIP60(1)           --------->RAP2.6(2)  <---------GLK1(2) ---ABI4(2)          --------->RAP2.3(1)            <---------ATERF1(2)  --------->ARR14(2) --ATERF1(1)       --------->ALFIN1                 --------->DEAR3(1)   <---------ARR14(2) --->ANAC58     --------->DAG2                      --------->ATERF1(2)--------->LBD16 --->DEAR3(1)  ---------->DOF2           --------->ARR11(3)  <---------DEAR3(1) >TCP16(1)  <-----------------AGL3       <---------ARR11(3)  <---------ETT(2) >PCF2 <-----------HVH21<------NtERF2   <---------At4g35610<-----------HVH21 >ARR14(2) --------->ANAC58--------->ANAC58        <---------LBD16--------->ERF1 -ARR14(2) --------->ANAC58--------->ANAC58      --------->DEAR3(1)<---------DEAR3(1)   ccgccgccgagtcacccaaaagtggcgccacgactaatgtgaagctctccatcgccggcactgtcgccgccgccggattcttcatcttctctctctaagt  259400  Previous    Next  AGI:  At3g01690.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G14390.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14651.1); contains InterPro domain Alpha/beta hydrolase fold-1 (InterPro:IPR000073) Range:  from: 256544    to: 258554    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g01700.1    Description:  AGP11 (ARABINOGALACTAN PROTEIN 11). Identical to Classical arabinogalactan protein 11 precursor (AGP11) [Arabidopsis Thaliana] (GB:Q9FVE0;GB:Q9S7N4) Range:  from: 258886    to: 259638    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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