Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            --------->ATHB12                                          --------->ATHB51                                          <---------ICU4                                         <---------YAB1                                         --------->ICU4        ----------->GT1                <---------ICU4      ----------->GT1                 --------->ICU4     --------->ALFIN1                 <------ZmHOX2a(2)   <---------ANAC46                   <---------YAB1 ------>CCA1(2)                      --------->ARR11(3) ------ARR14(2)                      <---------ARR11(3)                                            -- ----->ARR11(3)              <---------GLK1(1)                     <---------ANAC58                <- ----->ARR14(2) ---------->DOF2     --------->GLK1(1)              <---------ANAC58               <--   atatagtgtggagaaaaaaaaagaaatatagaattcagagatcattatttggcagaaaatgaagagaaatcgtgccagacatgttcaatttctaatctat  241600         --------->ZAT18                                                                  --------->YAB1         <---------ZAT18                                                                  --------->TOE2(3)     --------------->AtSPL8                                 <---------ARR14(2)           <<<<<<<<<ARR2 ------------->AGL15                   <-------MYC3         --------->ARR14(2)           <<<<<<<<<ARR1 --------------AGL15                   ------->MYC3      --------->ANAC58           <-----------GT1 ---------------AGL3   <---------GLK1(1)--------->ALFIN1 --------->ANAC58    <---------ZAT6   actattactagtaccctacttgatgaaatctgaacaaaacatgtgtgtgtttcagaatcacgaattcgaattgctactagtgttttttacaatcttaatg  241700                                 <---------AHL20(2)                                 --------->AHL20(2)                            --------->ICU4                          <---------ICU4                                               --------->YAB1                  ------>ZmHOX2a(2)                                                   <---------ATHB51       ----------->GT1    <---------AHL20(2)                                          <---------ATHB12  --------->AHL20(1)     --------->AHL20(2)                                      <---------PCF2  <---------AHL20(2)     --------->ICU4                                         ----------->TCP11(1)  --------->AHL20(2)----------->GT1                                           --------->ALFIN1   gaaataaaatggttatttgatcgagtaataaatattaaaattttgaaatcggtctggacttggacttggacttggacatggtgggccaataataaacaaa  241800                               ----------->GT1                               --------->ANAC58                               <---------ANAC55(2)                         <---------WOX13(1)                       <---------ICU4                 --------->GLK1(1)              --------->LBD16  --------->ANAC58             --------->HSFB2a(2)   --------->DAG2             ----------->GT1                    <---             <---------HSFB2a(2)  ---------->DOF2            <---------TOE2(3)               --------        <----------DOF2--------->ATHB12                      --------->DAG2                  --------       <---------ICU4 <---------YAB1                  ----------->GT1              ---------->DOF2  <---------MYB52(2)  --------->ICU4          --------->AHL20(2)         <----------DOF2     <-------   tccaactaatcttttccagatttcatgattgaaacgtaaagtgaaagattaaacaagagaaaaaaggttagatagctttctgaacaaaaggagagaattt  241900                            ------>ZmHOX2a(2)                           <------ZmHOX2a(2)                          <---------ARR14(2)                ------>NtERF2                --------->LBD16               --------->ANAC46                   <---------ZAT6               --------->ANAC58        <---------WRKY18(1)                  ---------->DOF2  --------->CCA1(2)       --------->ARR11(3)    <---------ANAC58     ------------------------>ANAC81 --------->ARR14(2)       --------->ARR14(2)    <---------ANAC58    <----------ID1 <---------ARR14(2)       <---------ARR11(3)    <---------ANAC46  ----------->GT1 ------LBD16   --------->ANAC58       ----------->HVH21         ---------->DOF2 ->ARR14(2) --------->ARR14(2)        --------->WRKY12      --------->TOE1(3) ->GLK1(2)  --------->GLK1(2)         --------->WRKY38(1)   --------->TOE2(3)                -------- --ARR14(2) <---------ARR14(2)      <----------DOF2        ----------->RAV1(2)             <---------   ggggatatagatagaatccgccatttaagatcccttccctttgacctgttgagtgttgacaacctgaaaagaaacaaaaaaagaagaagaccgcttcatc  242000       <---------ALFIN1                                                    <---------AHL20(2)    --------->ANAC46              <<<<<<<<<TBF1                   --------->ALFIN1 ->REM1(1)        *TSS       <------------------------ANAC81   --------->DAG2          --------->GLK1(2) -DOF2 --------->AtMYB61    <----------DOF2                  ---------->DOF2          <---------GLK1(2)   ttctcaacaccacctctgtcttattgctctcttttcttcttcgtcgacttctctcacacatacaaaaggtttgggattttttttggtagaatctttttaa  242100                                                        <---------MYB46(3)                                                        <------MYB46(1)                                                        ----------->GT1                                                        <------MYB83                                                     <-------GAMYB                                                    <---------AtMYB61                                                    --------->MYB111(2)                                                    --------->MYB55(2)                                                    --------->MYB52(2)                                                    --------->MYB111(1)                                 ---------->ID1     <---------MYB46(3)                 <------ZmHOX2a(1)                                 <-----------GT1   <--------P --------->AHL20(2)    <---------ICU4                                <-----------GT1   <---------ANAC58            --------->TOE2(3)                        <---------MYB52(1)        <-------GAMYB        <----------DOF2<----------ID1      --------->YAB1 ------>ZmHOX2a(2)            <---------ANAC58     <---------DAG2--------->MYB59   gttatctatcgaaatcagtttgatctgttttgtttttccctcttctcttctgggttgttggtgaataaatctacttttcatcttaattaggacaaatctc  242200                --------->ARR11(3)                <---------GLK1(2)                <---------ARR14(2)                                                               ----        --------->ANAC58                                                                        -----        --------->ANAC46                                                                        -----        --------->ANAC58                                                                        -----    <---------AHL20(2)                                <---------ANAC58                   <---------ANAC58    ---------->DOF2                                   <---------ANAC46                   <---------ANAC58   --------->YAB1            <---------MYB52(1)       <---------ANAC55(1)              --------->ARR11(3)   --------->AHL20(2)       <-------GAMYB <-----------GT1                              <---------AHL20(2)   <---------AHL20(2)       <---------At4g35610       <---------ANAC58           --------->TOE2(3)   tctaattaaaacgcctcagattttgtcttcagttgttttgttttaaaccctaagttacttgtaagttaaatgaaatctacaattcttaatttcttgtttc  242300                                               ---------->DOF2                                        --------->RAP2.6(3)                                       --------->MYB52(1)                                      ----------->HVH21                                    --------->ANAC46                   --------->ATHB12                                    <---------ANAC55(2)               <---------YAB1                                    --------->ANAC55(2)             <---------ANAC46                                    <---------O2                    <---------ANAC58                                    --------->ANAC55(1)             <---------ANAC58                                    --------->O2      --------->At5g28300    ------->TEIL                                    --------->ANAC58  <---------MYB52(1) <---------WOX13(1)   ----------->GT1                  --------->bZIP60(2)             <---------ANAC55(2)          ---- ----------->AGL15                  --------->ANAC58 <------MYB46(1)--------->ANAC55(2)          <--- ------------>AGL3                  <---------TGA1a  <------MYB83   <---------O2            --------- ------------>AG                    --------->TGA1a --------->MYB59 <---------ANAC55(1)    <---------ATHB12 ------------>AGL1                  ======================bZIP_DOF<---------DOF5.7(2)    --------->WOX13(1)   caaaattgtgaaaaaatccaaacatatatagaatagacacgtaacggctcaaagtcggtaattggaggtaacgtgattgaatcttcttcatcaatcataa  242400                                 <-----------GT1                            <---------ICU4                         <------NtERF2                        --------->ABI4(1)                        <---------ATERF1(1)                        ------>NtERF2                       --------->RAP2.3(2)                       --------->RAP2.3(3)                       --------->RAP2.6(2)                       --------->DEAR3(1)                      --------->ATERF1(1)                      --------->DEAR4(2)                      <------NtERF2                       <---------ARR11(3)                      --------->ERF1                      --------->ARR11(3)                      --------->ORA47(2)                  --------->AHL20(1)                      --------->RAP2.3(1)                 <---------AHL20(1)                     ------>NtERF2 ----------->RAV1(2)    <---------AHL20(2)                     <---------DEAR4(2)                   --------->AHL20(2)                     <---------ATERF1(1)            --------->TOE2(3)                     <---------RAP2.3(1)        --------->YAB1                    <---------DEAR3(1)          <---------ICU4                                ------- ----->ARR11(3)     --------->ANAC58           <---------YAB1                             <----------DOF2 ------ARR11(3)     --------->ANAC46         --------->YAB1                          <<<<<<<<<TBF1 >YAB1              --------->ANAC58         <---------ICU4   <-------TEIL        <<<<<<<<<TBF1   atcttctctcttaagaattaagacgccgcctcattacacctgttccataatcatcgtcaatatattcattctgcaaaactattcttcttcttctttcaaa  242500  Previous    Next  AGI:  At3g01650.1    Description:  RGLG1 (RING DOMAIN LIGASE1); protein binding / zinc ion binding. similar to RGLG2 (RING DOMAIN LIGASE2) [Arabidopsis thaliana] (TAIR:AT5G14420.3); similar to RGLG2 (RING DOMAIN LIGASE2) [Arabidopsis thaliana] (TAIR:AT5G14420.2); similar to RGLG2 (RING DOMAIN LIGASE2) [Arabidopsis thaliana] (TAIR:AT5G14420.4); similar to unnamed protein product [Vitis vinifera] (GB:CAO14679.1); contains InterPro domain von Willebrand factor, type A (InterPro:IPR002035); contains InterPro domain Copine (InterPro:IPR010734); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 242018    to: 245275    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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