Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        --------->ANAC58                                                                                      --------->ANAC58                                                              --------->YAB1          --------->ANAC46                                                             <---------YAB1        ------>ZmHOX2a(2)                                                          <---------------AGL15   <------ZmHOX2a(2)                                                          --------------->AGL15  <---------ARR14(2)                                                 <---------ZAT2                  --------->ARR14(2)                                                 --------->ZAT2                 <------ZmHOX2a(1)                                                 --------->At4g35610         <--------P                                                 <---------At4g35610       <------MYB46(1)                                           <---------YAB1<-----------------AGL3<------MYB46(1)                                   --------->ZAT14   <---------ANAC58      <------MYB83      ----------->GT1              --------->REM1(2) <---------ANAC58    <---------WOX13(1)  <-----------GT1       ----------->GT1----------->GT1   <-----------------AGL2<------MYB83       <-- ----->GT1 <---------YAB1          <---------ZAT14  ------>NtERF2      --------->ATHB12  ---------->DOF2   tttatcaccggttaaaattgaacagaatgtaaaactgtgtagagtattatcagctgcctgcttataatggtatagattggtaggatccaagaaaagagtg  239000                                     ----------->GT1                                    --------------->AtSPL8                                    <---------------AtSPL8                         --------->YAB1                        <---------ATHB12                      --------->WOX13(1)            --------->ANAC58      --------->ALFIN1            --------->ANAC46  ---------->DOF2         <---------ANAC58          --------->ANAC46 <---------YAB1             <---------ANAC58      <-----------HVH21 --------->ICU4             <---------TOE2(3) -------YAB1--------->ANAC58--------->YAB1     --------->TOE2(3)                        <---------TOE2(3)   accattgccttcacacgactcagccaattatcaaaagtgttgtacaaaacattaatgcttagctctgttccaacttcatatataagaattaacatatact  239100                                                                                  ---------->DOF2                                                                                <---------YAB1                                                                              <---------ICU4                                                                             --------->ICU4                                                                             <---------YAB1                                                                           <--------HAHB4                                                                           --------->YAB1                                                                           <---------ICU4               --------->AHL20(2) ----------->GT1                         <---------ATHB12        <------MYB83     <---------ANAC58              --------->AHL20(2) --------->ICU4    ---------        <------MYB46(1)  <---------ANAC58 <-----------GT1                 <---------YAB1   ----------   aatacatagttggtcattttaaaacttgctcgtgattcgtaaatttcccatcttaaatgaattagacaaattagccatcattatgaaagagaaaggttaa  239200                                                                                               <-----                                                                                             ------->MYC3                                                                                             <-------MYC3                                                                                            ---------                      ----------->GT1                                                       ---------            ------>NtERF2                                                                   <--------           <---------ZAT18                                      ----------->HVH21           <--------           --------->ZAT18                                    <---------O2                ------>NtERF2          <---------ANAC46                 <-----------HVH21  --------->O2               --------->DEAR3(1)          <---------ANAC58                --------->bZIP60(1) <---------TGA1a      <------ZmHOX2a(1)    --------->ATHB12 --------->DAG2       <---------bZIP60(1) --------->TGA1a =======================   <---------YAB1  ---------->DOF2      --------->YAB1        ===========================bZIP_DOF -->GT1   <---------ANAC58             <---------YAB1        <-------MYC3     <----------DOF2>>>>>>>> ->GT1   --------->At4g35610         --------->YAB1          ------->MYC3 <---------WRKY18(1)>>>>>>>>   attagatgattagcgggcaataaaaggttagaattgatattatcatgtcattcgatagtgacacatgtgactagtttgacctttaggagcgccaacgtgt  239300                                              <---------ARR14(2)                                         --------->ANAC58                                        --------->PCF2                        <---------GLK1(1)                                       <---------PCF2                        --------->ARR14(2)                                       --------->TCP15(1)           <---------YAB1                                       --------->TCP20             --------->TOE2(3)                                      <---------TCP23             <--------HAHB4 ------HVH21                          <---------TCP15(2)         <---------YAB1  ----------->GT1 >O2                                --------->ALFIN1           <------ZmHOX2a(1)----------->GT1 >TGA1a                           <-----------RAV1(1)  <---------YAB1 <---------AHL20(2) -TGA1a                           <---------ZAT6       ----------->TBP--------->AHL20(2)      ------- -O2  --------->At4g35610         <---------ANAC46----------->GT1<------ZmHOX2a(2)      ---------->DOF2 =bZIP_DOF                        --------->ALFIN1<---------ZAT6<---------ARR11(3)      *TSS--------- >>BZIP12                   --------->GLK1(2) --------->ARR14(2)--------->ARR11(3)<<<<<<<<<MYB98 >>ABI5----------->GT1   ------------>CBF--------->ANAC58  ---------->DOF2   <---------ARR14(2)   catatatcagcgtaaattccaaaacaaaacaatctagtgtgggacccaaatactgttataaaaaaggatcattaaaatggatatgttaaaaaaagaaagt  239400                                                                  --------->RAP2.3(1)                                                                  <------NtERF2                                                                 <---------ERF1                                                                 <---------RAP2.3(1)                                                                 <---------ATERF1(1)                                                                 <---------ORA47(2)                                                                 <---------DEAR4(2)                                                                <---------RAP2.3(3)                                                                <---------RAP2.3(2)                                                                --------->DEAR3(1)                                                                <---------RRTF1(3)                                                                <---------DEAR3(1)                                                                <---------ANAC46                                                               <---------ABI4(1)                                                               <------NtERF2                                                               --------->ATERF1(1)                                                              <---------ATERF1(1)                                                              ------>NtERF2                                                              <---------RAP2.3(1)                                                              <---------RRTF1(1)                                                              <---------ERF1                                                              <---------DEAR4(2)                                                             <---------RAP2.3(2)                                                             --------->O2                                                             <---------O2                                                             <---------DEAR3(1)                                                        <---------At4g35610                                                        --------->At4g35610                                                      <-----------RAV1(2)                                               <---------DEAR3(1)------>NtERF2                                         <---------ARR14(2) --------->ATERF1(1)                    --                                    <---------LBD16 <-----------HVH21                              <-                                    --------->LBD16<---------MYB46(3)                          ------                               --------->GLK1(1)  <---------AtMYB61                           <------ZmHOX2a(2)      <-----------TGA1    <------ZmHOX2a(2)  --------->LBD16<------NtERF2                    --------      <-----------HVH21  ------->TEIL    --------->ARR14(2)------>NtERF2                     <-------     --------->ANAC46    --------->ARR14(2)  ------>NtERF2<---------DEAR3(1)        =================HOX2a_HOX2a ---->GT1                <---------ARR14(2)<---------LBD16----------->HVH21         ================= ->DOF2 <-----------RAV1(2)------>ZmHOX2a(2)<---------LBD16<---------ATERF1(1)      ------>ZmHOX2a(1)   aaaaaacgcgtcagggaagagaagatggatccgaattccacggtttccggcgatggtcaggcgacggcggcgatagagcatcggtccttcgctcggatcg  239500                                                                         ---------->DOF2        <---------GLK1(1)                                               ----------->HVH21        --------->GLK1(1)                                               <---------MYB52(1)       --------->ARR14(2)                                              --------->LBD16   --------->HSFB2a(2)                                   <---------HSFC1(2) --------->ZAT2   <---------LBD16                                       --------->HSFB2a(1)--------->At4g35610   <---------HSFB2a(2)                            --------->MYB52(1)  <---------ANAC46 ------->GLK1(1)                              <---------WRKY18(1)     <---------ANAC58 --------GLK1(1)                             --------->WRKY12 --------->HSFB2a(2) >ZmHOX2a(2)                                 --------->WRKY38(1)      <---------ANAC58 ->ARR14(2)                               --------->ATHB12    <---------HSFB2a(2)    --------->MYB52(1) --ARR14(2)                              <---------YAB1  <---------HSFB2a(1)<---------ZAT2       <--- =HOX2a_HOX2a                          <---------CCA1(2) --------->HSFC1(2) <---------At4g35610  ----   gatttctcggaaacccgagcgatgtatacttcgggcgaaccatatcattgaccatcggaaacttctgggcatccgtgaagctggagccatcggagcatct  239600                                                                                                =====                                                                                                -----                                                          --------->HSFB2a(1)                  ------                                                         <---------TOE2(2)                     <-----                                                         --------->SPL7                       <------                                    <-----------GT1      <---------TOE1(2)                    -------                                   <---------ZAT14     <---------SPL7                         <------                                   <---------ZAT18    --------->TOE1(1)                       -------     --------->ANAC58              --------->ZAT14    --------->TOE2(1)                       <------     --------->ANAC58             <-----------HVH21  --------------->AtSPL3               <---------LBD16  <---------ATHB12       ------>ZmHOX2a(2)           <---------------AtSPL3            ============== ------ANAC55(2)       --------->ARR11(3)        --------->AtMYB61            <---------YAB1 <------- ----->ANAC55(2)       <---------ARR11(3)    <---------ETT(2)    <----------DOF2       ------>ZmHOX2a(1)   cgtaatcaagcctcatccattccatgatctcgtccagttcacctctctcgaccatctcgtacgttctctttccatttcttctcattctcctctctggatc  239700                                                                   --------->ATHB12                                                                  <---------YAB1   <-----------GT1                                              --------->YAB1 ==============HOX2a_HOX2a                                     <---------YAB1 ->ZmHOX2a(2)                                               <---------TOE2(3) --->GLK1(1)                                                <---------YAB1 ----GLK1(1)                                               <---------AHL20(2) ---ARR14(2)                                               --------->AHL20(2) -->ARR14(2)                                             <---------YAB1 ---ARR11(3)                                             <---------AHL20(2) -->ARR11(3)                      <----------DOF2       --------->TOE2(3) ---AGP1------>ZmHOX2a(1) <-----------GT1               --------->YAB1  <-----------GT1 ==HOX2a_HOX2a       <---------YAB1          <-------TEIL--------->AHL20(2)                 <-------- --CCA1(2) ----------->RAV1(1)------>ZmHOX2a(1)------->TEIL--------->YAB1              <-------TEIL   tctatttatcctccaacattgttgttattctcctctctttgtttggatgcattttcaatattaatattatgatttcactgaatttcaggctcatcttttt  239800                                                       <----------DOF2               <---------At4g35610                                                    --------->ANAC58                 --------->At4g35610                                                <-----------GT1                <---------ANAC46                                    <---------ANAC46--------->ANAC46        --------->GLK1(2)             --------->ATHB12       ----------->GT1 --------->ANAC58       <---------ARR11(3) --DOF2     <---------ATHB12      ----------->GT1 <-----------GT1          --------->ARR11(3)   tcattagattccaaatcatttgtttattagtttgaattgtgtaaaacatttttcacgcttcatggctctaattctgagattttgtgtagctgaatcgttt  239900  Previous    Next  AGI:  At3g01630.1    Description:  similar to NFD4 (NUCLEAR FUSION DEFECTIVE 4) [Arabidopsis thaliana] (TAIR:AT1G31470.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63775.1); contains InterPro domain MFS general substrate transporter (InterPro:IPR016196); contains InterPro domain Nodulin-like (InterPro:IPR010658) Range:  from: 237246    to: 239120    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g01640.1    Description:  GHMP kinase family protein. similar to GHMP kinase-related [Arabidopsis thaliana] (TAIR:AT5G14470.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14683.1); contains InterPro domain Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721); contains InterPro domain Mevalonate and galactokinase; (InterPro:IPR006206); contains InterPro domain GHMP kinase, C-terminal (InterPro:IPR013750); contains InterPro domain GHMP kinase; (InterPro:IPR006204) Range:  from: 239388    to: 241450    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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