Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            <---------ICU4                                         --------->ICU4                                       --------->YAB1                                      --------->ICU4                                      <---------YAB1                                   --------->ICU4                           ----------->HVH21                        --------->MYB52(1)--------->ATHB12 ----->ARR14(2)        ------->GAMYB--------->YAB1        ----------->GT1 ------ARR14(2)       --------->MYB46(3) <---------YAB1 ---------->DOF2      --------->AHL20(2) --------GT1     --------->YAB1    <---------YAB1      <------ZmHOX2a(1)--------->ANAC58 -ARR14(2)      <---------YAB1  --------->ICU4      <---------LBD16     --------->ANAC58          ---   atccgtcttcttagaactacgataaccatcggacatgatgatgatgattagttctcaggaaagtcaaattttggacgaaaaaaataagtttttgaataaa  236800               <----------ID1                             --------->ARR14(2)               ----------->GT1                        <------ZmHOX2a(2)                             -   --------->GLK1(2)                                 <-----------ARR10                  ------>ZmHOX2a(1)   --------->ARR11(3)                               <------ZmHOX2a(1)                 <---------HSFC1(2)   <---------ARR11(3)                      <---------HSFB2a(2)   <---------GLK1(2)    --------->HSFB2a(1)   <---------ARR14(2)                      --------->HSFB2a(2)--------->LBD16         --------->HSFC1(2)   --------->ARR14(2)                      <---------LBD16<---------ARR14(2)         <------ZmHOX2a(2) -------->GT1---------->DOF2     --------->ZAT18 <------ZmHOX2a(1)        <---------ANAC46    <------   cagaaaatctacagaaaaagaaaaacaagagagagtggtctagttctcggaggaggatcaaatccgagaatttctgtcttgaaatcgatccttctccttt  236900                              ---------->ID1                             <------MYB46(1)                             <------MYB83                             <---------ANAC58                             <---------ANAC58                            <---------AtMYB61                            --------->MYB111(2)                            <---------MYB46(3)                            --------->MYB46(2)                                                  <----                            --------->MYB111(1)                                          <---------AHL20(2)                            --------->MYB55(2)                                           --------->AHL20(1)                          <---------MYB52(1)                                             <---------AHL20(1)                         <---------RAP2.6(3)                              <------------CBF      -----                   ---------->DOF2      --------->At4g35610 --------->ARR11(3)           --------->AHL20(2)                  <---------ICU4        <---------At4g35610 <---------ARR14(2)          <---------AHL20(2)                  --------->YAB1*TSS  <-----------GT1       --------->ARR14(2)       --------->AHL20(2)                 <---------ATHB12 <----------DOF2          <---------CCA1(2)        <---------AHL20(2)           --------->ANAC58 --------->MYB52(2)           --------->YAB1------------>CBF --------->AHL20(2) -------->AtMYB61<---------ATHB51 <---------DAG2         --------->AHL20(2)         --------->AHL20(2) ----DOF2  --------->ANAC58<---------MYB55(1)       ------------>CBF <-----------------AGL1  <-------   caccaaaactgtaacgccaattatagccgtttggtgctttttagcttccatctctacaattatatctgcattcttcaattggccaaataaataaattaca  237000                                               <------ZmHOX2a(2)                                               --------->GLK1(1)                                              <---------ARR14(2)                                              --------->AGP1                                              --------->ARR11(3)                                              --------->ARR14(2)                                              <---------AGP1                                              <---------ARR11(3)                  <---------AHL20(2)                               <---------ICU4--------->At4g35610              --------->AHL20(2)                               --------->AHL20(2)                            --------->AHL20(2)                              <---------AHL20(2)  <---------ANAC46    --------->RAP2.6(3)                 <---------------AGL15       <---------At4g35610     --------->MYB52(1)                 --------------->AGL15       <---------CCA1(2)      <---------SPL7--------->AHL20(2)                 <----------DOF2          <---------MYB52(1)       ------>ZmHOX2a(2)            <---- ------------>CBF==================================================================================== --------CBF<<<<<<<<<TBF1     --------->AHL20(2)------>ZmHOX2a(2)<---------ARR11(3)      <---------MYB52(1) ---------------->WRI1  <---------ZAT6   <-----------HVH21       --------->ARR11(3)    ----------->GT1 ----GT1 <<<<<<<<<TBF1  ----------->GT1 --------->ANAC46    <------NtERF2  <----------DOF2    <------   ttgttcaattcttcttcttctttatagagtaaataatttcatccgtcagatctcgtagaggcggtatgatcttacggctttaaattaaactgttattttc  237100                                                                                ---------->DOF2                                                                         ----------->GT1                                                                         --------->TOE1(3)      --------------->AGL15                                              --------->TOE2(3)      <---------------AGL15                                             ----------->GT1     ----------------->AGL3                                            ------->TEIL     ----------------->AGL2                                            --------->SPL7     ----------------->AG                        ----------->GT1      ------>MYB46(1)               -     ----------------->AGL1                  <---------YAB1           ------>MYB83          <-------- -------GT1           <----------DOF2   ----------->GT1               --------->MYB52(1)  ----------- =====================MADS_MADS        >>>>>>>ZML2   ---------->DOF2<---------MYB52(2)    --------->ANAC55(2) -----GT1   --------->YAB1   <-----------GT1--------->AHL20(2)     --------->DEAR3(2)     <---------ANAC55(2)   tctatttgccaaaatcagaaattcctttttttaacctagttctagttaaaatagtaaaaggaattttgaaccgaacgttaaaaaaagaagtctcgtaact  237200                                                       --------->ATERF1(1)               --------->DEAR3(1)                                                       <------NtERF2                    <------NtERF2                                                     <---------DEAR3(1)                 --------->ATERF1(1)                                                     <---------ANAC46                  <---------ATERF1(1)                                                    <---------LBD16                    ------>NtERF2                                                    --------->ATERF1(1)                <---------RAP2.6(3)                                                    <------NtERF2                     ------->GAMYB                                                   <---------RAP2.3(1)                --------->DEAR3(1)                                                   ------>NtERF2                      ===============                                                   <---------ATERF1(1)                --------->RAP2.3(3)                                                  <---------RRTF1(3)                  --------->RAP2.3(2)                                                  <---------RAP2.3(3)                --------->ERF1                                                  <---------DEAR3(1)                 --------->RAP2.3(1)              <------NtERF2                      --------->ATERF1(1)                --------->At4g35610            <---------DEAR3(1)                  ------>NtERF2                       <---------At4g35610       <---------YAB1                           <---------ATERF1(1)            <---------ARR14(2)     --------->YAB1                            --------->DEAR3(1)            --------->LBD16       --    <---------ATHB51                           ----------->HVH21      ===============================    <---------ATHB12                          *TSS<---------RAP2.3(2) -------->P  --------->MYB46(3)    --------->ICU4                          --------->DEAR3(1)      --------->MYB46(3)--------->RAP2.6(2) ----------->CBF                       <---------DOF5.7(2)   <------ZmHOX2a(1) --------->ARR14(2)  == -CCA1(2)----------->HVH21           --------->DOF5.7(2)--------->ALFIN1  --------->AtLEC2      ----- >GT1<---------ICU4           ---------->DOF2------>NtERF2<------ZmHOX2a(1)<---------LBD16<---------ATERF1(1)   ctctcaattatgagacggcgaaatgaaacccccaaagacgttaacgacgacgacggcggaggaggaagaaacaaccatgcggaaacagccgccttcgcct  237300            <-----------HVH21          <-------MYC2          ------->MYC4          ------->MYC3          ------->MYC2          ------->PIF5                                        <----------DOF2          <-------PIF5                                      <---------At4g35610          <-------MYC3                                      --------->At4g35610          <-------MYC4                                      <------NtERF2         --------->TGA1a                                   --------->RAP2.6(2)         --------->O2                                     <---------RAP2.6(2)         <---------TGA1a                     <---------ORA47(1)         <---------ANAC55(2)           <---------ARR14(2)--------->ATERF1(1)         --------->ANAC55(2)          <------NtERF2      <------NtERF2       <---------ALFIN1              --------->LBD16 --------->MYB52(2)                 --------->ANAC58     ------>NtERF2                  <---------ANAC58 <---------MYB46(3)                 --------->ANAC58    --------->RAP2.6(2)             <---------ANAC46 <------MYB46(1)               --------->DEAR3(1) --------->ANAC46                   <---------ANAC58 <------MYB83                  --------->ANAC46 --------->ANAC58                  --------->ATERF1(1) <---------RAP2.6(2)         <---------ATERF1(2) --------->ANAC58                  <---------LBD16  <---------AtMYB61              --------->ATERF1(2) ==================MYC_MYB         <------NtERF2    <---------MYB46(3)            <---------LBD16 -------->DOF2                   --------->ALFIN1--------->ALFIN1          <---------ATHB12 ==================MYC_MYB       <---------DEAR3(1)<--------P<---------MYB52(1)  <---------At5g28300 ==================bZIP_DOF   <---------ATHB12<---------DEAR3(1)          --------->ANAC58        <-- ->NtERF2<---------O2         <-----------RAV1(1)<-----------RAV1(1)      --------->ANAC58 ------->TEIL   ccaaagccaccacgtgtcaattctatgctccaatggtggcggagatggacggtgttggtggccgctatctggattcaagcattcaccggcacgaacttcg  237400                                                                              --------->ARR14(2)                                                                              <---------ARR14(2)                                                                              <---------GLK1(2)                                                                           ----------------->AGL1                                                                           <-----------------AGL1                                                                        <---------ANAC58                                                                        <---------ANAC58                                                                     <---------MYB52(1)                                                                     <--------P--------->CCA1(2)                                                                    <-------GAMYB                                                                   <---------DEAR3(2)                                                                   <---------MYB46(3)                                                                   --------->MYB55(2)              --                                                                  <---------ANAC58                 <-                                                                  <---------ANAC58                 <-                                                                  <---------DEAR3(1)              <--                                                                  <---------ANAC46                <--                <---------ETT(1)                                  <---------DREB2C(2)            <---     ------>NtERF2                                                <---------RAP2.6(2)           <---- -------GLK1(1) >>>>>>>>>>AtTINY2                               ------------>AtMYB77  ---------->DOF2   atttctctgcctactcttccgacatgaagtcttccatgggggtttctcaatctcggcttaactacatggcggttgcttcagatttgggtaaagcattggg  237500                                                          <------NtERF2                                                          --------->LBD16                                                         --------->DEAR3(1)                                                         --------->RRTF1(3)                                                         --------->ANAC46                                                         --------->ANAC58                                                         --------->ANAC58                                                         --------->RAP2.6(2)                                                         --------->RRTF1(2)                                                         --------->RAP2.3(3)                                                         --------->RAP2.3(2)                                                        <------NtERF2                                                        --------->ATERF1(1)                                                        --------->RRTF1(1)                                                        --------->RAP2.3(1)                                                        --------->ERF1                                                      --------->RAP2.3(2)                                                      --------->ATERF1(2)                                                      --------->RAP2.6(2)                                                      --------->DEAR3(1)                                                     --------->RAP2.3(1)                                                     --------->ATERF1(1)     <---------At5g28300                                                     --------->ERF1        --------->ARR14(2)                                                    --------->At4g35610    <---------MYB52(1)                                                 --------->At4g35610     <---------DEAR3(2)                                            <----------DOF2           ------------>AtMYB77                                            ===================================bZIP_DOF                                            <---------DAG2------>NtERF2 <---------DEAR3(1)                                           <---------ANAC58           <-----------HVH21                                       <---------ANAC46------>NtERF2 <---------TGA1a                                       <---------ANAC58<---------RAP2.3(1) <---------ARR14(2)                                       <---------ANAC58<---------ATERF1(1)<-------GAMYB --------------------->TaNAC69(2)    --------->LBD16------>NtERF2    --------->TGA1a -----MYB46(1)                       ------>NtERF2  <---------At4g35610 <---------TOE1(2) -----MYB83                        <---------LBD16 --------->DEAR3(1)<---------O2 -------AtMYB61           <-----------GT1  <---------ANAC58          --------->O2   <---------ZAT14 -------MYB46(3)    <---------ANAC58--------->ANAC46<---------ATERF1(1) <---------TOE2(2) -----P             <---------ANAC58<---------DEAR3(1)<---------ATERF1(2)<---------MYB46(3)        -- ---GAMYB--------->ARR14(2)    <-----------HVH21 <---------At4g35610 =============MYC_MYB<---------MYB46(3)   ttggtcttctggtttcgccattgcctatttccctgtctccggcgtgcttttcgctgccgccgcaatgggactcgtcggttacggtgtccagtggttatcc  237600                                                                                     <---------ZAT2                                                                                  <---------MYB52(1)                   <---------MYB59                                 --------->At4g35610                   --------->TOE2(3)            ------>ZmHOX2a(1) <-----------RAV1(1)--------->At4g35610                   <---------DAG2          <---------At4g35610  <---------At4g35610  <---------At4g35610                 ------->TEIL           <---------At4g35610     --------->At4g35610  --------->ZAT2                <-----------GT1         --------->At4g35610    --------->GLK1(2) <-----------TGA1           ------>ZmHOX2a(2)           --------->MYB52(2)   --------->ANAC58     <-----------HVH21       ----------->HVH21       --------->ARR14(2)     --------->LBD16 <---------MYB46(3)      -------  --------->DEAR3(1)           <---------ARR14(2)   <---------LBD16<---------At4g35610  <-------TEIL ------->DEAR3(1)-------->P  <------------------------ANAC81--------->ANAC58 <---------ALFIN1 ------>ZmHOX2a(1)   atcgccgatgtgatcgatctaccttactctctggttctggtttgctgctccttagccgggttaagcatctgctggttcaacaccgtcagcttcatcctct  237700  Previous    Next  AGI:  At3g01620.1    Description:  glycosyl transferase family 17 protein. similar to glycosyl transferase family 17 protein [Arabidopsis thaliana] (TAIR:AT5G14480.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14684.1); contains InterPro domain Glycosyl transferase, family 17; (InterPro:IPR006813) Range:  from: 235204    to: 236932    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g01630.1    Description:  similar to NFD4 (NUCLEAR FUSION DEFECTIVE 4) [Arabidopsis thaliana] (TAIR:AT1G31470.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63775.1); contains InterPro domain MFS general substrate transporter (InterPro:IPR016196); contains InterPro domain Nodulin-like (InterPro:IPR010658) Range:  from: 237246    to: 239120    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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