Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               --------                               <---------ARR14(2)                                           ---------                               --------->ARR14(2)                                         --------->LBD16                             <----------DOF2                                             --------->ANAC46                            <---------ANAC46                                             --------->ANAC58                         <---------DEAR3(1)                                              --------->ANAC58       ---------->DOF2  --------->SPL7           --------->DAG2                         <---------LBD16 ---------At4g35610 --------->HSFB2a(2)         ---------->DOF2               --------->TOE1(3)   --- -------->At4g35610 <---------HSFB2a(2)     <----------ID1                    <----------DOF2<------- ---ANAC58    --------->ARR11(3)   --------->At4g35610                        --------->TOE2(3)------ ---ANAC58    <---------ARR11(3)   <---------At4g35610           --------->ICU4  ---------->DOF2-----   gctgctacacaaagaagctcttctagtacggcgttttcgctgaagaaggaaaaagctggaatatgtcataaataagaaaactttaaagtctccgcaactg  231300                                                             --------->At4g35610                                                          <---------At4g35610      --------->YAB1                                                          <---------ZAT2           <--------HAHB4                                                       ---------->DOF2             <---------ICU4                                                     --------->LBD16              --------->ICU4                                                    --------->LBD16             --------->YAB1                                                    --------->HSFB2a(2)        --------->ICU4                                                    --------->ANAC46           --------->KAN4(1)    <---------ARR11(3)                              <---------HSFB2a(2)   --------->LBD16    --------->ARR11(3)                             <---------LBD16        --------->HSFB2a(2)   <---------CCA1(2)                               <---------HSFB2a(2)   <---------ANAC46 ->At4g35610                                    <---------GLK1(1)        <---------HSFB2a(2) -->RAV1(1)              <-----------RAV1(2)    --------->GLK1(1)        --------->HSFB2a(2) ------>bZIP60(1)   <-----------GT1            <---------ARR14(2)        <---------LBD16 --At4g35610  <---------YAB1               <---------LBD16--------->At4g35610 <---------KAN4(2)    -- ->GAMYB      --------->ICU4<------ZmHOX2a(1)  --------->ARR14(2)       <---------LBD16            -- ---->ZAT14 --------->YAB1 <---------At4g35610 <---------GLK1(2)    <---------ICU4<---------YAB1   <-   aagtcatatctctgtgataattttacttcaggagaccagttttctctcggattcccggaaagctgcttaaatattccgggaataatcattttcaatctct  231400            --------->ATHB12            <---------ICU4           --------->ICU4    <---------ALFIN1                                             <---------MYB46(3)   <---------ZAT14                          <-----------GT1      ----------->GT1   --------->ZAT18                      --------------------->WRI1<-------GAMYB   <---------ZAT18            <---------CCA1(1)               --------->YAB1                        -   --------->ZAT14            <---------RVE1(1)              <---------YAB1                        -- ----->TEIL<---------YAB1    <---------ARR11(3)     <---------At4g35610                         ----- ------->ARR14(2)            --------->ARR11(3)  <----------DOF2<---------YAB1          ---------->CDC5 --------ARR14(2)<---------YAB1     <-----------GT1 --------->At4g35610                 <-----------RAV1(2)   gaatctgcacttcatcattgtaattcaaatagatattttgacctttgtactctttgctgtcttatgatggttactctgtttttgtttggctcagggtcca  231500                                                                       ---------->DOF2                                                                   --------->ANAC58            --------->AHL20(2)                                     --------->ANAC58            <---------AHL20(2)                                   <-----------GT1              <------           --------->AHL20(2)                                 <---------ICU4       --------->AHL20(2)     <-----------GT1                   --------->TOE2(3)     --------->ICU4    <---------AHL20(2)    <---------YAB1                     <---------DAG2     <---------YAB1       --------->AHL20(2) -------->At5g28300                 <-----------GT1    <---------ARR11(3)      --------->AHL20(1) --------->GT1             <-----------GT1             --------->ARR11(3)     --------->AHL20(2)    < ---->MYB52(1)<---------YAB1      <-----------GT1  ---------->DOF2 --------->ANAC46<---------AHL20(2)   acggttataactatttatttttgggtattttactattttcaccttatattctcaaaagttctcattatcaccccaaagaaattaattaatccgatttaac  231600                                                                                                   --                                                                                                   <-                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                              <------                                                                                              -------                                                                                             <-------                                                                                             --------                                                                                            <-------GAMYB                                                                                   <-------GAMYB-----                                                                                  <---------MYB46(3)                                                                                  --------->MYB55(2)                                                                              <---------TOE2(3) <----                                                                           <---------ZAT14 <---------DEAR3(2)                                                                           --------->ZAT14<---------DREB2C(2)                                                                      --------->ZAT14     --------->ETT(1)                                                                      <---------At4g35610 <---------DEAR3(1)                                                                      <---------ZAT2      <---------ANAC46                                       --------->ANAC46               --------->At4g35610 <---------DEAR4(1)                        <---------ALFIN1       <---------TOE1(3)      --------->ZAT2      <---------At1g77200                        --------->ANAC46       <---------TOE2(3)     ----------->RAV1(1)<-----------HVH21     --------->ZAT6   --------->ANAC46 --------->ANAC58            --------->LBD16--------->MYB111(2)    <---------TOE2(3) <---------ALFIN1 --------->ANAC58            <---------At4g35610 <-----------RAV1(1)   <-----------GT1 <---------ZAT18  <---------REM1(2)              --------->At4g35610 <---------ANAC46 -----GT1          <---------ZAT14 <---------HSFB2a(2)            --------->ANAC46--------->MYB52(2)< ----------DOF2    --------->ZAT14 --------->HSFB2a(2)    *TSS   <---------LBD16<-------GAMYB<-------   ctctttaacattactagacagttcacacaccctctgtctagacggaattagggttttcttaagctattccgcagcagtctacggttgttgtgtcggtggt  231700    ------>NtERF2   --------->DEAR3(1)   --------->RAP2.3(2)   --------->RAP2.3(3)  --------->RAP2.3(1)  <------NtERF2  --------->ATERF1(1)  --------->ERF1 ------>NtERF2 <---------RAP2.3(1) <---------ATERF1(1) ------->ATERF1(1) --------PCF2 -------ATERF1(1) ------DEAR3(1) ------MYB46(3) ------RAP2.3(3) ---MYB46(3) -->MYB55(2)                                                              --------->ZAT2 --DEAR3(1)                                                               <---------ZAT2 ->ALFIN1                                                                 --------->At4g35610 ---->ALFIN1                                                    --------->ANAC58 -----ANAC46  <---------At5g28300                 <----------DOF2         <---------At4g35610     <-- ---------DEAR3(1)<----------DOF2   --------->HSFB2a(2)         --------->ANAC46                ----- --AtMYB61   <-----------GT1        <---------HSFB2a(2)         --------->ANAC58       --------->SPL7   gggcgcctccaaaatttaccctttagtataaataagttttggaaaattcagactttggttattgaaacgccatctcagctctaattcagtacgatgggga  231800                   <---------AtMYB61                  <-------GAMYB                 <---------MYB46(3)                <---------DREB2C(2)                <---------DEAR3(1)                --------->ALFIN1                <---------ANAC46                <---------AtMYB61               --------->ATERF1(1)               <------NtERF2              <---------ATERF1(1)              <---------DEAR4(2)              <---------RRTF1(1)              <---------RAP2.6(1)              <---------ERF1              <---------RAP2.3(1)              <---------ORA47(2)              ------>NtERF2             <---------ANAC46             <---------RRTF1(2)             <---------RAP2.3(2)             <---------RAP2.3(3)             <---------DEAR3(1)             <---------ATERF1(2)             <---------RRTF1(3)             <---------RAP2.6(2)             --------->ALFIN1             --------->DEAR3(1)             --------->ATERF1(2)            --------->ATERF1(1)            --------->DREB2C(1)            <------NtERF2            <---------At4g35610            <---------ABI4(1)            --------->At4g35610            --------->RAP2.3(1)           <---------RAP2.6(1)           ------>NtERF2           <---------ATERF1(1)           <---------DEAR4(2)           <---------ERF1           <---------ORA47(2)           <---------RAP2.3(1)           <---------RRTF1(1)          <---------RAP2.3(2)          <---------ATERF1(2)          --------->ATERF1(2)          <---------RRTF1(2)          <---------RRTF1(3)          <---------ANAC46          --------->DEAR3(1)          --------->ALFIN1          <---------RAP2.6(2)          <---------DEAR3(1)          <---------RAP2.3(3)                                                 --------->ANAC58         --------->RAP2.3(1)                                                  --------->ANAC58         <---------ABI4(1)                                                 <------NtERF2         --------->ATERF1(1)                                            --------->SPL7         ------>NtERF2                                                 --------->ALFIN1         <------NtERF2                                               --------->ANAC55(2)        <---------ATERF1(1)                     --------->ARR11(3)   <---------ANAC58        <---------RAP2.3(1)                     <---------ARR11(3)   <---------ANAC55(1)       <---------DEAR3(1)                      --------->RVE1(1)     <---------ANAC58             <--       <------NtERF2                           --------->GLK1(1)     <---------ANAC55(2)          ===       <---------RAP2.6(2)  <---------DEAR3(1) <---------GLK1(1)     <---------ANAC46          ------      <---------LBD16      <---------LBD16    <---------ARR11(3)    <-------TEIL               <-----      <------NtERF2--------->ALFIN1           --------->ARR11(3)   --------->CCA1(2)         <-------    --------->ALFIN1 <---------SPL7         <---------TOE2(2)     --------->ARR14(2)         <-------   <-----------HVH21<---------MYB46(3)   --------->YAB1           <---------ARR14(2)        <-------- <---------AtMYB61<------NtERF2       --------->WOX13(1)       <---------TOE1(3)          <---------DEAR3(1) ----ZmHOX2a(1)<---------ABI4(1) <------ZmHOX2a(1)      XXXXXXXXXXXXXXXXXXXX>MIR826       --------->ANAC46 ---->ALFIN1--------->DEAR4(2)<------NtERF2 <---------TOE1(2)  <---------TOE2(3)         <---------LBD16   ggagaggtcgcggcggcggcggtggtatgggcggaggaatcaatcgtagatatctgagtcaagttatggatacgtgcggcaaggatttatctacggcgga  231900                           --------->ANAC58                           --------->ANAC58                          --------->SPL7                          <-------TEIL                        <---------ARR14(2)                        --------->ARR14(2)                        <---------SPL7                      <---------------AtSPL3                                       ------>ZmHOX2a(1)                      --------->LBD16                                         --------->ANAC58                     <-----------RAV1(2)                                      --------->ANAC58 ----ZmHOX2a(1)     <-----------------AGL1                                --------->ANAC58 ===================HOX2a_HOX2a                                           --------->ANAC58 --->ATERF1(1)----------------------->TaNAC69(2)   <------NtERF2          --------->AtLEC2 -NtERF2     ------>ZmHOX2a(2)              --------->WRKY12             >>>>>>>GRF7  <---------TOE2(3) --ANAC46  <---------ARR11(3)               --------->WRKY38(1) --------->ANAC46  --------->TOE2(3) --DEAR3(1)--------->ARR11(3)         <---------ANAC58 ------->PIF5     <-----------RAV1(2) -LBD16    <-----------ARR10          <---------ANAC58 <-------PIF5   <-----------HVH21   ggacatcgttgatgatcttcgttccaggtacggcaattttgcgaggttgactcggcaagtgcttctactcaatgtcaggcaagtccttaatgttagaaac  232000                                                      <---------At4g35610                                                  --------->ARR14(2)                                                  <---------ARR14(2)                                                --------->HSFB2a(1)                                                <------MYB46(1)                                                --------->HSFC1(2)                                                <------MYB83                              ---------->DOF2                                                <---------HSFC1(2)            <---------ANAC46         ---------->DOF2                        <---------HSFB2a(1)         --------->CCA1(2)   <----      <-------GAMYB                    <---------At4g35610       <------ZmHOX2a(1) <---------MYB46(3)     ----------->GT1    <---------At4g35610  <------ZmHOX2a(1)--------->At4g35610 <--------P   ------   aacaagagggttaaagacgaagatgaagatgacaacattggagatgaggaaggttctgcttctcagaggaagaaacagagacgggttgatgagaaagagg  232100                             <---------TOE2(3)      <---------ANAC58                <---------At4g35610                 <---------ANAC58                --------->At4g35610            --------->KAN4(1)                --------->ZAT2                 <---------HSFB2a(1)           --------->At4g35610                 --------->HSFB2a(1)                 <---------LBD16       <---------At4g35610   <---------TOE1(3)<---------KAN4(2)                 <<<<<<<<<TBF1       < --ZmHOX2a(1)   --------->ZAT14      <------ZmHOX2a(1)                       <<<<<<<<<TBF1          < ----->GT1 <---------At4g35610 <------ZmHOX2a(1)  <-------TEIL            <<<<<<<<<TBF1       -------   agaaattgcagcgagcggagcagtcgcatttaaggaagaggaatatggaacgttcagtgtcttcttctccgtcttcttcttcttcttcggaagacagtgg  232200  Previous    Next  AGI:  At3g01610.1    Description:  CDC48C (EMBRYO DEFECTIVE 1354); ATPase. Identical to Cell division control protein 48 homolog C (CDC48C) [Arabidopsis Thaliana] (GB:Q9SS94;GB:Q8L769); similar to (Cell division control protein 48 homolog E), ATPase [Arabidopsis thaliana] (TAIR:AT5G03340.1); similar to hypothetical protein OsJ_019050 [Oryza sativa (japonica cultivar-group)] (GB:EAZ35567.1); similar to hypothetical protein OsI_020596 [Oryza sativa (indica cultivar-group)] (GB:EAY99363.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46664.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain AAA+ ATPase, core; (In Range:  from: 231658    to: 235221    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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