Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        ------>ZmHOX2a(2)                                                                                     --------->CCA1(2)                ------>MYB46(1)                                                      <------ZmHOX2a(2)                ------>MYB83                                                        --------->ARR11(3)              <---------MYB111(2)                                                   <---------ARR14(2)              <---------MYB46(2)                                                    <---------ARR11(3)        --------->YAB1              <---------AHL20(2)    --------->ANAC58          --------->ARR14(2)        <---------ICU4              --------->AHL20(2)    --------->ANAC58          --------->AGP1       --------->ICU4            --------->WOX13(1)     ---------->DOF2             <---------AGP1 --------->ANAC46         <---------TOE1(2)  --------->TOE1(3)                ----------->HVH21 -AGL1 <---------ATHB12   <---------TOE2(3)  --------->YAB1                  <-----------HVH21 -AG --------->GLK1(1)    <---------TOE2(2)  --------->TOE2(3)      ------->GAMYB  <---------CCA1(2)   tccacagaaatcatcaccaaactcgacttaggtttcaattaattcaaccataaatgagaaaagcatccaactgcaatcgagtcacagatctggattcaaa  216300                                                                         --------->ANAC58                                   --------->ARR14(2)                 --------->DEAR3(1)                                  ==============HOX2a_HOX2a          --------->MYB46(3)                                  <------ZmHOX2a(1)                  --------->DEAR3(2)                              ---------->DOF2                      --------->MYB52(1)                       --------->ANAC58                            ------>MYB83                       ----------->GT1                             ------>MYB46(1)                       --------->ANAC58                <---------AHL20(2)--------->ANAC46                       --------->ANAC55(1)    <---------GLK1(1)  <---------MYB59                       --------->ANAC55(2)    --------->GLK1(1)  --------->AtMYB61                       --------->ANAC46  <------ZmHOX2a(2)   --------->ANAC58  --------->TOE2(3)                 <---------MYB52(2)<---------ARR14(2)  --------->AHL20(2)--------->ANAC58      --------->YAB1   <---------ANAC55(2)--------->YAB1     --------->ANAC58  --------->YAB1      --------->AHL20(2)     <---------AHL20(2)  --------->YAB1  --------->MYB46(3)   tcgaacaataaaaaaaaaaactaacacgtaataaaaggattcgatcagaaatcagaattaaacacgaccaaaccgacgcaatcttagagagaaactagaa  216400                                --------->GLK1(2)                            <---------MYB59                           --------->HSFB2a(2)                             ------->TEIL                        --------->GLK1(2)                                 <---------CCA1(2)                      ------>MYB46(1)      <------ZmHOX2a(1)            <---------ANAC55(2)                      ------>MYB83        --------->ICU4     <---------At4g35610                    <---------MYB59       <---------YAB1   --------->ETT(2)<---------ARR14(2)          --------->At4g35610 <------ZmHOX2a(1)   <------ZmHOX2a(1)    --------------->AtSPL8          ----------->GT1  <---------HSFB2a(2)  <---------TOE2(3) --------->CCA1(2)   attgaaacagagagcttaaataccaaattctaggaatctaagtcaggattgaggaattttgtcaacagataaacgcgtacctgatttgatattcaagagt  216500                                                                               <----------DOF2                                                                               <---------DAG2                                                                              <---------------AGL15                                                                              --------------->AGL15                                                                             ----------------->AG                                                                             <-----------------AGL1                                                                             <-----------------AGL3                           --------->ARR14(2)                                ----------------->AGL3                           <---------ARR14(2)           <---------ZAT14      <-----------------AGL2                       <---------At4g35610              --------->ZAT14      ----------------->AGL1                       --------->At4g35610              <---------ZAT18      <-----------------AG                      ----------->RAV1(1)         --------->GLK1(2)       --------->GLK1(1)                    --------->MYB46(3)            <---------ARR14(2)      --------->GLK1(2)                   ------->TEIL              <-----------HVH21    <----------DOF2                <---------MYB52(2) ---------->DOF2--------->ARR14(2)     <---------GLK1(2)          -   cgagtttgaatgtggaaaacgaaccagcagattggattaaagactcgggtcaaatctgtgaactcgagcttttgagattcccttttttggtttccctctc  216600                                                                                              -------                                                                                              <------MYB46(1)                                                                                              <------MYB83                                                                                             --------            ----------->RAV1(1)                                   ----------------------->TaNAC69(2)-          ------>NtERF2       --------->ANAC58          --------->ANAC58                   <---------MYB52(1)         --------->ANAC46     --------->ANAC46          --------->ANAC58      *TSS       --------->MYB46(2)         --------->ANAC58     --------->ANAC58        ---------->DOF2   <----------DOF2  --------->MYB52(2)         --------->ANAC58   ---------->DOF2         --------->AtMYB61   --------->TOE2(3)--------->MYB111(1) -------->YAB1          <---------ANAC46  ---------->DOF2       --------->GLK1(1)      <---------MYB52(1)   tataacaatctacgccacaagaagaagcgtagaagcaagagagagaaagttagaccaaaagcaaggatgtccaactttagaccgtctctgttagttaggt  216700                                                    <-----------------AGL3                                                  ------>NtERF2                                                 <---------ALFIN1                                                --------->DEAR4(2)                                                <------NtERF2                                                --------->ATERF1(1)                                                --------->RAP2.3(1)                                               ------>NtERF2                                             --------->ORA47(2)                                             --------->ATERF1(1)                                             --------->RAP2.3(1)                                             --------->ERF1   <---------ZAT18                                    --------->TOE2(3)   <----------DOF2             <---------AHL20(2)                                    --------->TOE1(3)------>ZmHOX2a(1)              --------->AHL20(2)                                  ------->TEIL <---------ATERF1(1)            ------------>CBF                              --------------->AtSPL8=================================================                            <---------ARR14(2)--------->RAP2.3(2)           --------->ANAC58                            <---------ARR11(3)--------->RAP2.3(3)           --------->ANAC58                            --------->ARR11(3)--------->DEAR3(1)          <---------ATERF1(1)        ------>MYB46(1)     --------->ARR14(2)--------->RAP2.6(2)         <---------ALFIN1   <-----------GT1 ----------->RAV1(1)      --------->At4g35610   <----------DOF2  --------->AHL20(2) ---->GT1--------->MYB46(3)--------->CCA1(1)<---------At4g35610----------------->AGL1 ->MYB59------>MYB83       --------->RVE1(1)<---------ATERF1(1)<-----------------AGL1               - ---------->TBP --------->ANAC46 <---------ALFIN1--------->DEAR3(1)      <---------ZAT18   ------>ZmHOX2a(1)   ttataaaaccatccatcgtcgcaacaaaaatatctgcaccttaatgagccgcctccttcttttgggcccttttgggccactccaattttattcctaggcc  216800                ---------->DOF2                                                 <----------ID1             --------->AtLEC2                                                   --------->ANAC46           --------------->AGL15                                        <---------ANAC55(2)           <---------------AGL15                                        --------->AtLEC2          ----------------->AGL3<---------AHL20(2)                    <---------ANAC46        <-----------GT1        --------->AHL20(2)           --------->AHL20(2)  --------->ANAC58    <---------AHL20(2)      --------->ATHB51              ----------->GT1       --------->ANAC58    --------->AHL20(2)      <---------AHL20(2)          ---------->DOF2 ----------->GT1 ==========================MADS_MADS                <-----------GT1<---------ZAT6 -------->AHL20(2)          --------->AHL20(2)    --------->AHL20(2)<-----------HVH21   cattatataatttccatgtaaagaatagaattatttaatgagattagttgaatttaacaaaagttaatagtgtcatgtaaaaacgacatggatgaacaaa  216900                                                                 <---------ARR14(2)                        --------->AHL20(2)                       --------->ARR14(2)                     --------->YAB1                    <---------ARR11(3)   <---------ANAC46                    <---------AHL20(2)               --------->ANAC58 <<<<<<<<<<MYB80          <-----                  --------->YAB1<---------ARR11(3)   --------->ANAC58<------MYB83              ------           ---------->ID1       --------->ARR11(3)   --------->ANAC46<------MYB46(1)  <---------MYB52(1)   aatatcaacatttttcgcataaataataaactaagagcttctatatacaaaattcaagacatttttggatttggtttgacttggactcgtttggctctgc  217000                              --------->ARR14(2)                              <---------ARR14(2)                           <------NtERF2                             <---------AHL20(2)                           --------------->AtSPL8                    --------->AHL20(1)                    <---------ZAT18                                  --------->AHL20(2)                    <---------ZAT14                           <---------ANAC58                    --------->ZAT18                     <---------AHL20(1)                   <-------                    --------->ZAT14                     --------->ARR11(3)                   ------>ZmHOX2a(1)              --------->ZAT2 --------->At5g28300     --------->AHL20(2)                     ---------         --------->ANAC46 <---------LBD16           <---------YAB1   <---------AHL20(1)  <---------ARR14(2) ----At4g35610<---------At4g35610     <---------AHL20(2)--------->AHL20(1)               --------->ARR14(2) --->At4g35610<---------ZAT2 <---------SPL7<-----------GT1    <---------ANAC58   ----------->GT1   tgtacaaatatactccagctagtgcagtcgcggtacctgtttatttaacaagtgattatatattgcttcaataaaatgaacaagtgtaacaaatccttta  217100                                                                                                 ----                                                                                             <-------                                                                                          --------->ANAC58                                                                                          --------->ANAC46                                                                                        <---------ALFIN1                                                                                      <---------ALFIN1                                                                                      --------->AtMYB61                                                                                     --------->ANAC46                                                                                   --------->ANAC46                                                                                   --------->AtMYB61                                         --------->ALFIN1                          ------->GAMYB ----  <---------AHL20(1)           <---------ZAT6                                     --------->MYB46(3)  --------->ARR11(3)           ----------->GT1                                  <-----------GT1  ---- ---DOF2                ----------------->AGL1                            ----------->GT1 --------->ANAC58 >TOE2(3)               ----------------->AG                 ---------->DOF2    <---------ICU4<------   ctaatatatactactagtagttgtttacctatagagttaagaggtgagactggagttttgaagaaaagaatggatgatgtaataaccaccacacgcttca  217200  Previous    Next  AGI:  At3g01540.1    Description:  DRH1 (DEAD box RNA helicase 1). Identical to DEAD-box ATP-dependent RNA helicase 14 (RH14) [Arabidopsis Thaliana] (GB:Q8H136;GB:O64430;GB:Q8W4F5;GB:Q93WJ3); similar to ATP binding / ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT5G14610.1); similar to ATP-dependent RNA helicase-like protein DB10 (GB:P46942); similar to hypothetical protein OsI_000569 [Oryza sativa (indica cultivar-group)] (GB:EAY72722.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14745.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IP Range:  from: 212758    to: 216678    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g01550.1    Description:  triose phosphate/phosphate translocator, putative. similar to CUE1 (CAB UNDEREXPRESSED 1), antiporter/ triose-phosphate transmembrane transporter [Arabidopsis thaliana] (TAIR:AT5G33320.1); similar to unknown [Populus trichocarpa] (GB:ABK94265.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620); contains InterPro domain Protein of unknown function DUF250 (InterPro:IPR004853); contains InterPro domain Tpt phosphate/phosphoenolpyruvate translocator; (InterPro:IPR004696) Range:  from: 216814    to: 219061    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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