Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             --------->REM1(1)                         <---------ANAC55(2)       --------->ZAT2                                <---------ANAC46       --------->At4g35610     <---------ALFIN1      <---------ANAC55(1)     --------->ARR11(3)      --------->ANAC46        --------->MYB46(3)     <---------ANAC58        <---------ARR11(3)   --------->MYB52(1)       --------->ANAC46         <---------YAB1       <---------TOE2(3) ------------->AtSPL8   <---------ALFIN1             <---------ANAC58    ---------->DOF2 ------->DAG2         <---------ATERF1(1)          <-----------GT1      <---------AHL20(2) --------------AtSPL8<---------ZAT18    --------->AHL20(2)              --------->AHL20(2)    <------ ------->DOF2     <-----------GT1       <---------AHL20(2)    --------->WRKY38(1)            --------   taaagtaccagctacaatattagccccctccccccactatatttatatgtaaattacgtttgtgttgacttcatttaaagatgtcagtatgtcactaata  188000      --------->DAG2   <---------SPL7  --------->ANAC58                                                             ---------->DOF2      <  --------->ANAC58                --------->ZAT18                        --------->YAB1          <--- ---YAB1    --------->ICU4        <---------ZAT18                 <---------TOE2(3)      <---------ANAC55(2) ->YAB1----------->GT1      <---------ATHB12     <---------ATHB12<-----------GT1       --------->AHL20(2)   ttggacgtaaggtgataatgcaagactctaatgaagtccacttccaaacaaatgaagaaaatgaaattaacattttcatcacaaagaaattacatatatg  188100                                                                                                   --                                                                                                  ---                                                           <---------YAB1                        <---                                                   --------->ARR14(2)                            <---      --------->MYB52(2) --------->DAG2            <---------ARR14(2)                            <---    <---------MYB52(1)  ---------->DOF2            <---------GLK1(2)                             ----  <---------ZAT6    <---------HSFB2a(2)       --------->MYB52(1)                                 <--- ---------ANAC46    --------->HSFB2a(2)    <---------ANAC55(2)          --------->MYB52(1)       <--- --------RAV1(1) <----------DOF2           --------->ANAC55(2)        <---------MYB52(2)---------->DOF2   tgttgtgttagttttttttctttcagaaaagtcgaaaccgaaatcacataacggattcactatgattctataactaacagataatacaaacaaagcccaa  188200                                                                                --------->YAB1         --------->YAB1                                                      --------->YAB1        <---------YAB1                                                ------->GAMYB        <---------ATHB12                                             --------->MYB46(3)     --------->MYB46(3)                                             --------->RAP2.6(3)  ------->GAMYB                                                    --------->MYB52(1) --------->MYB46(3)                                     ---------->DOF2     <---------ATHB12 ------->MYB52(1)                                --------->AtLEC2 --------->MYB55(1) ---->GAMYB ----------->GT1                    <---------ANAC58   ------->GAMYB<---------YAB1 ------MYB46(2)                                ------>ZmHOX2a(2) --------->MYB46(3)<---------AHL20(1) ------MYB111(2)                               <---------ANAC58  <---------MYB111(2)            ----- ------MYB52(2)                              --------->ARR14(2)  <---------MYB46(2)<---------AHL20(2) ----->MYB46(3)                 --------->YAB1<------ZmHOX2a(2)  <---------MYB55(2)--------->AHL20(1) ------MYB111(1)               <---------YAB1--------->ARR11(3)  <---------MYB111(1)        --------- ------MYB55(2)           ---------->DOF2    <---------ARR14(2)  <---------MYB52(2)--------->AHL20(2)   ctaacgacccatcatagtaaatcacagaaaaagatgataactaaacagatcgtgcaaagaaagcccaactaacggcccatcataataaattacaaaaaga  188300     --------->LBD16    --------->HSFB2a(2)    <---------HSFB2a(2)   <---------LBD16               <---------ZAT14 --------->GLK1(2)               --------->REM1(2)                                      <---------ICU4 <---------ARR14(2)              --------->ZAT14                                     <---------ICU4 --------->ARR14(2)<---------ARR11(3)          --------->At4g35610            <<<<<<<<<TBF1 ----->DOF2        --------->ARR11(3)    ---------->DOF2                ------>ZmHOX2a(1)  *TSS ->DOF2      <------------CBF   --------->ALFIN1                 <---------DAG2      --------->YAB1   aagaatccggaagaaaattgaaatcttatccagagtgtagagagaaagaagcggagtcacaaaaaccccttatcctcttcttcttcatcatcatctctaa  188400       --------->ANAC46       ----------->HVH21    --------->ARR14(2)    <---------ARR14(2)                                       XXXXXXXXXXXXXXXXXXXX>MIR319C   --------->GLK1(1)                  <----------DOF2 <----------DOF2   <---------GLK1(1)           <-----------GT1  <---------TOE1(2)                                 <--   --------->RVE1(1)      ---------->DOF2 <----------DOF2    XXXXXXXXXXXXXXXXXXXX>MIR319A/B     <----   ttcaaatatccgacgcagacattttagacaaagttactctctttctttctcatgttcttttcggacagaacaaaactccctaatccaaatgtcaattcct  188500                                                                                    <-------GAMYB                                                                                   <---------MYB46(3)                                                                                  <---------ANAC58                                                                                  <---------ANAC58                                                                                  <---------ANAC46                                                                                 <------NtERF2                                                                                <---------DEAR4(2)                                                                                <---------ORA47(2)                                                                                <---------ATERF1(1)                                                                                <---------RAP2.3(1)                                                                                <---------ERF1                                                                                <---------RRTF1(1)                                                                                ------>NtERF2                                                                               <---------ANAC46                                                                               <---------RAP2.3(2)                                                                               <---------RAP2.3(3)                                                                               <---------DEAR3(1)                                                                              --------->RAP2.3(1)                                                                              --------->ATERF1(1)                                                                              --------->DREB2C(1)                                                                              <------NtERF2                                                                              --------->DEAR4(2)                                                                              <---------At4g35610                                                                              <---------ABI4(1)                                                                              --------->At4g35610                                                                             <---------ERF1                                                                             <---------RAP2.3(1)                                                                             <---------DEAR4(2)                                                                             <---------ATERF1(1)                                                                             ------>NtERF2                                                                             <---------RAP2.6(1)                                                                             <---------RRTF1(1)                                                                             <---------ORA47(2)                                                                            <---------DREB2C(2)                                                                            <---------RRTF1(3)                                                                            <---------RAP2.3(3)                                                                            <---------RAP2.3(2)                                                                            <---------RAP2.6(2)                                                                            <---------DEAR3(1)                                                       ------>ZmHOX2a(2)    <---------ATERF1(2)                                                     <---------ARR11(3)     --------->ATERF1(2)   <--                   --------->At4g35610               --------->ARR11(3)     <---------RRTF1(2)    ---                 --------->YAB1              <-----------GT1                <---------ANAC46      <-- -------AtMYB61  <---------ICU4           --------->YAB1    <---------At4g35610--------->DEAR3(1)==== ------DOF2   --------->YAB1          <---------AHL20(2)    <---------------------WRI1           ----   ttggtctctctctgaataatcatctctcttcaaaccctattcaattttaactatcgatcttcggctaagtctccaatggcggcggcgtttgcctctcttc  188600                                         --------->GLK1(2)                                        <---------ARR14(2)                                --------->LBD16                               --------->HSFB2a(2)                                       ------>NtERF2                               --------------->AGL15                                     --------->LBD16                               <---------------AGL15                                    <---------ATERF1(2)          ----------->GT1 --------->GLK1(1)                                             --------->ATERF1(2)          <---------bZIP60(1)  <---------HSFB2a(2)                                     <---------LBD16          <---------ANAC46<---------GLK1(1)                                    <---------MYB52(1)          --------->bZIP60(1) <---------LBD16                                 <-------GAMYB -------ALFIN1           <---------ARR14(2)                                  --------->MYB52(2) ------------>AGL15      --------->ARR14(2)                   --------->DAG2 <---------MYB46(3)   --- -------------AGL15      <---------GLK1(2)         <---------ANAC58  --------->HSFB2a(2)<---------ETT(1) ==============================================MADS_MADS     ---------->DOF2<-------TEIL--------->HSFB2a(2) ------------->AGL3 ------>ZmHOX2a(1)>>>>>>>>>TBF1 <---------ANAC58  <---------HSFB2a(2)<---------HSFB2a(2)   ccacatttagtgtcgtcaattcctccagatttcccagaagaagaatcggtttttcttgctccaaaaagcccctcgaagttcgttgttcttccggcaatac  188700                      <----------DOF2                   <---------MYB52(1)                                                 <<<<<<<<<<<<<<<                <---------LBD16                                                       >>>>>>>>>>>>>>>              --------->ARR14(2)                                                 <---------ALFIN1            --------->HSFB2a(1)                                                 <---------ZAT14            --------->HSFC1(2)                                                  <---------REM1(2)            <---------HSFB2a(1)                        --------->ZAT6           --------->ZAT14     <   --------->ZAT6 --------->LBD16                    <-----------GT1        --------->ZAT6        --- ------>ANAC46<---------ARR14(2)                 <----------DOF2          <-----------GT1  <---------ATHB12   tcgttacactaagcaggttccggtctttctcattccattctctgtttcttccttttaacacttctgaattggatattaaccctacactctccaatggata  188800                                                                          <---------AHL20(2)                                                                          --------->AHL20(2)     ----------->ARR10                                                  <----------DOF2 <<LFY                                                       ---------->DOF2    ----------->GT1 >>LFY    ----------->GT1                                <-----------GT1--------->TOE2(3)       ----- ---------YAB1           <-----------GT1              <---------ICU4<---------WRKY38(1)      -------- -------->GT1  --------->ICU4                  --------->At4g35610  <---------WRKY12        <--------   atgtgattagatttgtaaaaatggatttgactgtttcagacttcgaatcagttgaatttttaccaaagagtcaactttaattttgttaatttgatgggta  188900  Previous    Next  AGI:  At3g01480.1    Description:  CYP38 (CYCLOPHILIN 38); peptidyl-prolyl cis-trans isomerase. similar to peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase [Arabidopsis thaliana] (TAIR:AT3G15520.1); similar to Peptidyl-prolyl cis-trans isomerase, chloroplast precursor (40 kDa thylakoid lumen PPIase) (40 kDa thylakoid lumen rotamase) (GB:O49939); contains InterPro domain Cyclophilin-like (InterPro:IPR015891); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; (InterPro:IPR002130) Range:  from: 188391    to: 190858    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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