Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               ------>ZmHOX2a(1)                                                        <---------ANAC58                                                  ------>ZmHOX2a(2)                                                  =========================HOX2a_HOX2a                                                  ==================HOX2a_HOX2a                                                 ==========================HOX2a_HOX2a                                                 <------ZmHOX2a(2)                                                 ===================HOX2a_HOX2a                                                <---------ARR11(3)               ----------->HVH21                --------->AGP1             ----------->RAV1(2)                --------->ARR11(3)             <---------At4g35610                <---------ARR14(2)       <----------DOF2                          --------->ARR14(2)                             ------      <---------DAG2        --------->ANAC55(2)<---------GLK1(1)                             ------>MYB46(1)   <-----------GT1          <---------ANAC55(2)--------->GLK1(1)            <----------DOF2  ------>MYB83 <----------DOF2        <-----------HVH21    <------ZmHOX2a(1)      ------>ZmHOX2a(1)--------------->AtSPL8 ----AHL20(2)--------->At4g35610       <---------LBD16  <---------ANAC58  <---------YAB1    ---------   attctttaccttttcttctgacacagagtcacatatttgactacggaggagatctattgcttcctagttcctacttatctttatcgcgttgtaccaacat  172900                                --------->LBD16                <-----------GT1<---------ANAC46            <---------ARR11(3) --------->HSFB2a(2)         ----------->RAV1(1)   --------->ANAC55(2)      --------->ANAC58         <---------HSFB2a(2)      --------->ANAC58         ----------->GT1      --------->ANAC46         <---------ANAC58                                    --------->AHL20(2)    ---------->DOF2<---------DAG2<---------MYB52(1)          --------->AHL20(2)  --------->TOE2(3) --------->AHL20(2)<----------DOF2            <---------------AtSPL8            --------->YAB1 --->TOE2(3)--------->ARR11(3) <---------ANAC58        --------->YAB1    <---------TOE2(3) -->RAV1(1)--------->REM1(1)   <---------ANAC55(2)    <---------ATHB12  ---------->DOF2    --------->YAB1   caatataaaagcaacatcttactttataaacttccgtaaatttgataacaagtacaatcaagtttaaatttttctaaagttaacataaatttagcatcat  173000                                        <---------O2                                        --------->TGA1a                                        <---------ANAC55(1)                                        <---------TGA1a                                        <---------ANAC58                                        <---------ANAC58                                        --------->ANAC55(2)                                        <---------ANAC55(2)                                        <---------ANAC46                                        <---------bZIP60(1)                                        --------->O2                                     <---------MYB52(1)            <---------AHL20(2)      <----------DOF2       <---------TOE2(3)            ==============MYC_MYB      <-----------GT1               <-------GAMYB  <---------ICU4               <---------ANAC58  --------->ATHB51             <---------ANAC58  --------->YAB1              <-----------RAV1(1)                                                  <-  <--------ATHB1           <----------DOF2                                                     <-----  <--------HAHB4           =======================bZIP_DOF                                   -------- <---------ATHB51 <---------TOE2(3) ==============bZIP_DOF                                 --------->ICU4 <---------ATHB12 --------->MYB59  <---------ANAC58               <---------YAB1        <------ZmHOX2a(1) --------->AHL20(2)----------->GT1<-------TEIL  --------->At4g35610                --------->ATHB12-- --------->ICU4   <---------TOE1(3)<---------ANAC58  <---------ARR11(3)           <---------ZAT6 ----   acaataattaacattttttttaggttaaacttttggtgcgttacgtgagtagcagcatcttcgaaaatatgtttagtagtagtagtgataggaattagga  173100                                                                                       <----------ID1      --------->ANAC58                                                                 <---------ZAT18      --------->ANAC58                                                                 --------->ZAT18      --------->ANAC46                                                            ---------->DOF2    --------->ANAC58                                                           --------->LBD16    <---------ALFIN1      ----------->GT1                                     --------->HSFB2a(2)    --------->ANAC58     ----------->GT1                                      <---------HSFB2a(2) --------------AtSPL8  --------->DAG2                                        <---------LBD16 -ZmHOX2a(1)          ---------->DOF2       --------->ANAC55(2)         <---------ARR14(2) ->MYB59      <----------ID1         <-------TEIL                       --------->ARR14(2)         <- ------->DAG2 ----------->GT1     <------ZmHOX2a(1)                  --------->YAB1--------->DAG2  -- ------>DOF2---------->DOF2   ---------->DOF2             <-----------GT1   <---------LBD16      ----   aaaggcacacacaaaaaagaaaaaaaaagggtaaaaggattcattcacgtttttttgttttctctctccaaacagaacttcgggaaaagtggacaaaaaa  173200          <---------AHL20(2)          --------->AHL20(2)         <---------AHL20(2)         --------->AHL20(2)         --------->AHL20(1)                    <------------------------ANAC81     --------->AHL20(2)          ------------>CBF                                      ------------>CBF     <---------AHL20(2)         --------->ANAC58                                      --------->ANAC58    --------->AHL20(2)          --------->ANAC58                     <<<<<<<<<TBF1    --------->ANAC58 ---------ID1            <----------DOF2<------MYB46(1)        <<<<<<<<<TBF1  ------------>CBF --------->GT1           <---------DAG2 <------MYB83        <<<<<<<<<TBF1     <---------------------WRI1 ------>DOF2  --------->YAB1    --------->ANAC46  ------------>CBF<<<<<<<<<TBF1   --------->AtLEC2   aaagaaaaaaatttaataagaaaacctctttttctcgcaatttggttttgttttcaatcttcttcttcttcttcttcgtcttcaatgcaaacaatgctcg  173300                                                                             --------->ANAC58                                <---------GLK1(2)                            --------->ANAC58                              <---------ATHB12                           <-----------HVH21                            ------>MYB83                              --------->At4g35610                  --------->MYB52(1)                                  ------>NtERF2                 <---------ATHB51       --------->MYB52(1)            <---------At4g35610          ------>MYB83      ------>MYB46(1) --------->ANAC46         --------->RAP2.3(2)          ------>MYB46(1) --------->MYB46(3)--------->ANAC58         --------->DEAR3(1)           <--        <---------MYB59 --------->PCF2<---------MYB52(2)            --------->RAP2.3(1)       <------        --------->TOE2(3)--------->DEAR3(2) --------->ANAC58      --------->DEAR3(1)          -------   attccattaacctaatcgaataatggaacccactgattctactaacgagcaactcggagacactaagaccgccgctgtcaaggaagagagtcgctccttt  173400                                                       <---------MYB52(1)                                                      <---------At4g35610                                              <-------GAMYB                                             --------->ABI4(2)                                             --------->MYB55(2)                                            <---------AtMYB61                           --------->LBD16  --------->ALFIN1                          <---------ATERF1(2)--------->MYB52(2)                         --------->DEAR3(2)<-------GAMYB                     --------->ARR14(2)                        --------->MYB52(1)<---------MYB46(3)             <------NtERF2                        ------>MYB83     <---------DREB2C(2)            ------>NtERF2                        ------>MYB46(1)  <---------DEAR3(1)           --------->ATERF1(1)                 <---------GLK1(1)      <---------ABI4(1)        ----------->TGA1    <------NtERF2--------->GLK1(1)      <------NtERF2--------->DEAR3(1)<---------DEAR3(1)           < <------NtERF2 ------->GAMYB--------->RAP2.3(1)  <---------ABI4(2)  --------->ETT(2)                < -------LBD16 --------->ANAC46------>NtERF2<------NtERF2      --------->ICU4 <---------ARR14(2)    -- ----DOF2------>ZmHOX2a(2)--------->ATERF1(2)<---------MYB46(3)<------ZmHOX2a(1)                 <--- -------------->WRI1    -------->P    <---------DEAR3(1)    <-----------RAV1(2)    ------->TEIL<-----   ctcggcatcgatctcaacgaaatccctaccggcgctactctcggcggtggttgcaccgctggtcaggatgacgacggcgaatatgaacctgttgaagttg  173500                                                                                     --------->ALFIN1                                                                                   --------->ALFIN1                                                                                  <-------MYC2                                                                                  ------->MYC3                                                                                  ------->MYC2                                                                                  <-------MYC3                                                                                 <---------ANAC58                                                                                 <------NtERF2                                                                                 <---------ANAC46                                                                             <---------RAP2.3(1)                                                                             <---------DEAR4(2)                                                                             <---------ATERF1(1)                                                                            <---------DEAR3(1)                                                                            <---------RAP2.3(2)                                                                            <---------RAP2.3(3)                                                                    --------->HSFB2a(1)                                                              ------>ZmHOX2a(2)  <---------ANAC58                                                              <---------LBD16<---------ORA47(2)                                                        <---------LBD16    --------->SPL7                              <---------LBD16       ================HOX2a_HOX2a<---------ANAC46                             ----------->RAV1(2)  ----------->RAV1(2)   <---------ANAC58                        <---------ALFIN1          ----------------->AGL1<---------ANAC58                     --------->SPL7             --------->ARR14(2)  <---------HSFB2a(1)                     --------->PCF2             <---------ARR14(2)  <---------HSFC1(2)          --------->ANAC46<---------ZAT2    ------>NtERF2    <------ZmHOX2a(2)------>NtERF2 ------MYB46(1)      <---------ARR14(2)  ------>NtERF2 ------->TEIL --------->HSFC1(2)      --------- ------MYB83         --------->ARR14(2)<-------PIF5 ------>ZmHOX2a(1)   <---------ANAC46   --------->ARR11(3) ------->MYB59     --------->LBD16     ------->PIF5 =================HOX2a_HOX2a------>NtERF2 ------MYB52(1)   --------->ANAC46    ----------->RAV1(2)   <---------ARR14(2)<------NtERF2<---------ARR11(3) ----MYB46(3)    <---------LBD16      --------->At4g35610   --------->ARR14(2)--------->ATERF1(1)   ttaggtcaattcacgataacccggacccagcccctggagcccctgccgaggttcctgaaccggatcgggatgcttcgtgcggcgcgtgtggaagacctga  173600                                                                                     ------>NtERF2                                                                                     <---------At4g35610                                                                                     --------->LBD16                                                                                 ------>ZmHOX2a(1)                                                                              ------>NtERF2                                                                             <---------ARR14(2)                                                                            <---------At4g35610                                                                            --------->ATERF1(1)                                                                            <------NtERF2                                                                           <---------ATERF1(1)                                                                           ------>NtERF2                                                                           <---------DEAR4(2)                                                                           <---------ERF1                                                                           <---------ORA47(2)                                                                           <---------DEAR3(2)                                                                           <---------RAP2.3(1)                                                          <---------DOF5.7(2)--------->ARR14(2)                                                  <---------ANAC46        <---------RAP2.6(2)                             <-----------HVH21    <---------ANAC58        <---------RAP2.3(2)                          <---------ANAC58        <---------ANAC58        <---------RAP2.3(3)     ---          <-------GAMYB   <---------ANAC58 --------->YAB1<---------WRKY12 <---------DEAR3(1)      <-- -->RAV1(2)              ------>NtERF2  <----------DOF2<-----------HVH21 --------->ATERF1(1)     ----   gtctatagagctcgttgtagtctgcgatgcctgtgagcgaggctttcatatgtcttgtgtcaacgatggagttgaggcggctccttccgccgattggatg  173700                                                                                       <------NtERF2                   <------NtERF2                                                     --------->DEAR3(1)                   --------->ATERF1(1)                                               <---------ATERF1(2)                  <---------RAP2.3(1)                                                --------->ATERF1(2)                  <---------ERF1                                                     --------->RAP2.6(2)                  ------>NtERF2                                                      --------->RAP2.3(3)                 <---------DEAR3(1)                                                  --------->RAP2.3(2)                 <---------DREB2C(2)                                                --------->DEAR4(2)                 --------->ATERF1(2)                                                --------->RAP2.3(1)                 <---------ANAC46               <-------GAMYB                       --------->ERF1                 <---------RRTF1(2)          <---------ANAC46                       --------->ORA47(2)                 <---------RAP2.3(3)        <---------MYB46(3)                      --------->ATERF1(1)          <---------SPL7                  --------->ALFIN1                         <---------ATERF1(1)         <---------ANAC46                 <---------MYB52(1)                      <---------DEAR3(1)         <---------ANAC58      --------->MYB52(1)                            --------->ANAC58         <---------ANAC58 <------ZmHOX2a(1)--------->ALFIN1                  --------->ANAC46 <---------At4g35610<---------ANAC46     <-------GAMYB                       --------->ANAC58 ------>ZAT14    <---------RAP2.3(2)     <---------SPL7            --------->HSFB2a(2)--------->ABI4(1) -------ZAT14    <---------ATERF1(2)    <---------MYB46(3)         <---------HSFB2a(2)------>NtERF2 ----->ALFIN1 <-----------RAV1(1) <-----------RAV1(1)      <---------ZAT2   ------->TEIL        <----   tgcagcgactgtcgtactggcggcgagaggagcaaactgtggccgttgggggttaagtccaagctcattctggacatgaacgcctcgccgcccagtgatg  173800  Previous    Next  AGI:  At3g01460.1    Description:  MBD9 (METHYL-CPG-BINDING DOMAIN 9); DNA binding. similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT1G77250.1); similar to hypothetical protein OsJ_005540 [Oryza sativa (japonica cultivar-group)] (GB:EAZ22057.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14789.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40897.1); contains InterPro domain FY-rich, C-terminal; (InterPro:IPR003889); contains InterPro domain FY-rich, N-terminal; (InterPro:IPR003888); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR Range:  from: 173323    to: 182461    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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