Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       --------->ATHB12                                                                                    ------>ZmHOX2a(2)                                                                                    <-------TEIL                                                                                   <------ZmHOX2a(2)        ---------->DOF2                                                         --------->LBD16       <------ZmHOX2a(1)                                                      <---------LBD16     <---------TOE1(3)                                                        --------->At4g35610     <---------TOE2(3)                                                        <---------At4g35610 -------ARR11(3)                                                            <---------DEAR3(1) ------>ARR11(3)                                                   <---------ZAT14<---------ARR14(2) ----AHL20(2)                               --------->GLK1(2)      --------->ZAT14--------->ARR14(2) --->AHL20(2)                     <---------GLK1(2)   --------->At4g35610<---------ANAC58 ---ATHB12 --------->DAG2      <-----------GT1       <---------DEAR3(1)  <---------ANAC58   aatctctaaggaaagagtgagttttccaaaatttcacattctcaacattctggagtcgctgcaacgaagtgttctgcgtctgcggatccattggactctc  168000                                                      <-----------HVH21                                                     ----------->GT1                                             --------->YAB1             --------->ANAC46            -                                        --------->CCA1(2)         --------->YAB1                -----                                       --------->ARR11(3)  --------->ARR14(2)                   <----                                       <---------ARR11(3)  <---------ARR14(2)--------->TOE2(3)  -----      <----------DOF2     --------->GLK1(1)  <-----------GT1     <---------ATHB12               <----   cacgatttcttttagaccagagagagagaactccaaactgagatatatcacaataccgtcaaatccactcatacacataccctaaatactcaaatcggag  168100                               ----------->HVH21                            ------>NtERF2                           <---------TGA1a                           --------->TGA1a                           <---------O2                           --------->O2                                                          ----         --------->TOE2(3)<------NtERF2                                                         <----   --------------->AtSPL8 --------->ATERF1(1)                                                --------   <---------------AtSPL8<---------ATERF1(1)                                                <--------   <---------------AtSPL3------>NtERF2                                                  <---------ANAC58 -------->ALFIN1        <---------DEAR3(1)                                  --------->ATHB12<-------- ---->ZAT2              ----------->HVH21                                  <---------YAB1xxxxxxxxxxxx -----ZAT2              --------->DEAR3(1)                        --------->LBD16       <---------ANAC46 ---->ZAT14          --------->ANAC46                            --------->ANAC46       <---------ANAC58 -----ZAT14        <---------ALFIN1             <------NtERF2   <---------LBD16    --------->MYB52(1)   cagtgggagtacctcaatcgaacacggcgacgcgagacagtgaagatggcagagacgatgaaataacacggagaatttcgattggaaacggcgtgcttat  168200                                ------>NtERF2                                ----------->RAV1(1)                               ----------->HVH21                                                    -                <---------ARR14(2)                                                                  -                <---------GLK1(2)<------NtERF2                                                      -                <---------ARR11(3)                                                              -----    --------->MYB52(1)    --------->ARR14(2)                                                   *TSS--  --------->At4g35610     <---------ARR14(2)                    --------->ANAC58             <------- --------->ANAC58         --------->GLK1(2)                     --------->ANAC58             -------- --------->ANAC58        --------->ARR14(2)                    --------->DAG2                -------- ----->YAB1     <---------ARR14(3)                            ---------->DOF2                -------- -----YAB1      --------->ARR14(3)                 ------>ZmHOX2a(2)        <-------TEIL     <------- ->ICU4------->GAMYB     <---------ARR14(2)      <---------ARR14(2)        --------->CCA1(2) -------- -ANAC58        --------->ARR11(3)<---------ALFIN1<------ZmHOX2a(2)       <---------ARR14(2) -------- -ANAC58      ----------->ARR10--------->DEAR3(1)--------->ARR14(2)---------->DOF2       <-----------HVH21 xxxx>smallRNA(i)    <---------LBD16    <------NtERF2    ----------->GT1  --------->ARR14(2) --------   gatcagcaacggagggaagattttggggaatcggcgacactcggcaatacagatcggtgaaggaaaaagcaaagaagatacaagttttttttgtcacgta  168300     --------->ANAC58 -------->ANAC46 -------->ANAC58 -------->ANAC58 ----->DOF2 ------->RAP2.6(3)                                       <---------ANAC55(2) --ANAC55(2)                                       <---------AHL20(2) --->GT1                                        <------------CBF ->ANAC55(2)       <-----------------AGL1     <---------AHL20(2)                                    < ->ANAC55(1)       ------------>CBF           <---------AHL20(1)                   <---------ARR11(3) --ANAC46      <----------DOF2                --------->ARR11(3)                   --------->ARR11(3) ->ANAC58      <---------DAG2          ----------->GT1   <---------YAB1         --------->AHL20(2)  < ->O2--------->ANAC58       <------ZmHOX2a(1) --------->AHL20(1)       <---------MYB46(3)         <-- ->ANAC58--------->ZAT6  <---------LBD16   --------->AHL20(2)        <---------MYB52(1)         <----   aaacggcacgaactctactttatcaattcaggaacagcgagtagttaaaatattgaattacgaaaacaccccttggttcagataaaatctttgtgatggc  168400                           --------->At5g28300                          ----------->GT1          --------->YAB1  --------->TOE1(3)                 ---------->DOF2 ----------DOF2           --------->TOE2(3)              --------->ANAC58     --------->ZAT14 ---------DAG2   ----------->GT1          *TSS      ----------->HVH21         <---------ZAT14 ----NtERF2  --------->MYB52(1)      --------->ANAC46    --------->ANAC58  >>>>>>>>>MYB1 -----RAP2.6(2) ----------->GT1------------>CBF   --------->At4g35610      >>>>>>>>>MYB2           --   cgcttttctcatttataacggataaaaaccgtaaacaatacacaagaacagaggctgacacctaaagcttactctctaactgcaatggctcacttcatag  168500                      <---------At5g28300                     <-----------GT1        --------->LBD16                    <---------ZAT14     --------->MYB52(1)                    --------->ZAT14     -------->P              <---------ARR14(2)                   <---------DAG2     <---------MYB111(1)      --------->GLK1(1)               ------>MYB46(1)        <---------MYB52(2)       <---------GLK1(1)     <------ZmHOX2a(1)               -------->P <---------CCA1(2)--------->ANAC46 --------->LBD16       <-----------RAV1(2)               ------>MYB83          --------->HSFC1(2)    --------->LBD16    <---------ANAC46              ----------->RAV1(1)   <-----------ARR10     <---------LBD16     <---------ANAC58             --------->AtMYB61   --------->ANAC46 ----------->GT1             <---------ANAC58            --------->MYB46(3)   <---------HSFB2a(2)     <---------LBD16 <---------ARR14(2)     ------->GAMYB <----------DOF2--------->LBD16 <---------ANAC46       --------->ARR14(2) ------->AtMYB61<---------ALFIN1 --------->HSFB2a(2)  ---------->DOF2<---------At4g35610   acctcaacagtctcaccaacactttaccgtctcttccgaaactacccgagagtcgtaaaaccgggaaatccagcgggtttgcttgcaggagaactgaaga  168600                     <---------At4g35610                  <-------TEIL              --------->MYB59              <---------------AtSPL8           --------->ARR14(2)           <---------GLK1(2)                                                  <---------DEAR3(1)           <---------ARR14(2)                                                <---------LBD16         --------->LBD16                      --------->GLK1(1)          --------->GLK1(1)       <---------LBD16                        <---------GLK1(1)          <---------GLK1(1)       <-----------------AG                  <---------ARR14(2)       --------->LBD16       ----------------->AGL1                --------->ARR14(2)    --------->MYB52(1)       <-----------------AGL1      ----------->HVH21             <---------SPL7                 <----      --------->MYB52(1)     --------->MYB52(1)  --------->At4g35610<---------LBD16      <---------TOE2(3)     --------->ARR14(2)<------ZmHOX2a(2)    <------ZmHOX2a(1) <---------ARR11(3)     --------->YAB1     <---------ARR14(2)============================HOX2a_HOX2a--------->ARR11(3)<------NtERF2   <----   atttcaagaaccggattcggtacagatcacaagacggatgacattaggatttgctgtctcaataggtcttaccggaattctcggcgaaaataatgtttcc  168700      <<<<<<<<<<<<<<<<<LFY                            ----------->RAV1(1)         <---------WOX13(1)     --------->ANAC58                          ------>ZmHOX2a(1)      <---------AHL20(2)     --------->ANAC58                       ------>ZmHOX2a(1)  --------->ANAC46 --------->ATHB12 -----ANAC58                    ------>ZmHOX2a(1)  <-----------GT1   --------->AHL20(2)   <----------DOF2 -----ANAC58          <---------WOX13(1)--------->ARR14(2) ---------->DOF2     <---------YAB1   ttggcacaagacaatgggttttggattgatggtcctcttccaattcctcctatttacaacagtaagcgccattttatattcttgattgttttctttcttc  168800                                                         --------->ATHB12                                                         <--------HAHB4                                                 <------MYB46(1)                                                 <------MYB83                                                 ----------->GT1                                                --------->MYB111(1)  --------->LBD16                                                --------->MYB59    <---------LBD16                                        <---------ARR14(2)      <---------GLK1(1)                    --------->AtLEC2    --------->ARR14(2)      --------->GLK1(1)    ------>ZmHOX2a(1)   aaatgtttgaacattttgagccatacaactattcaagatgagaattcgatttggtagaatcatttgatttccggttttgaattcgtcctcgatttgaata  168900  Previous    Next  AGI:  At3g01435.1    Description:  Expressed protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO67961.1) Range:  from: 166626    to: 168295    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g01440.1    Description:  oxygen evolving enhancer 3 (PsbQ) family protein. similar to PSBQ/PSBQ-1/PSBQA, calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G21280.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN78127.1); contains InterPro domain Photosystem II oxygen evolving complex protein PsbQ; (InterPro:IPR008797) Range:  from: 168442    to: 169625    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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