Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               <-------                       ----------->HVH21                                                 <-----------                     <----------DOF2  ----------->HVH21                                 <---------At4g35610                   <---------YAB1  <---------AtLEC2                                     --------->At4g35610            --------->ANAC58   <---------ANAC46                                      <---------At4g35610 -->ANAC58  --------->ANAC58   <---------ANAC58                                    --------->ZAT18 -->ANAC58---------->DOF2      <---------ANAC58---------->DOF2     --------->MYB52(1)------>ZmHOX2a(1)   aatgagtttcccaaaagcatcatctttgacatgacttgcattgacagaaaaaagagcgttcttaatcccaaacgaagataacaagtcctctgctcctttt  155200       --------->ARR14(2)       <---------ARR14(2)       <---------ARR11(3)      <---------CCA1(2)                                                    <---------ICU4    --------->YAB1                                                         -------->HAHB4   <---------ATHB12    --------->ATHB12                                   --------->ICU4  ------>MYB83  <---------ZAT18                                           <---------ATHB12  ------>MYB46(1)      <---------ICU4                                     <---------ATHB51  -------->P    --------->ZAT14          --------->TOE1(3)              --------->YAB1 ---DOF2  --------->TOE2(3)             ----------->RAV1(2)       --------->ANAC58               ---- ------AGL1------>ZmHOX2a(1)   <------ZmHOX2a(1)--------->AtMYB61 --------->ANAC58              -----   ggccaaccatatcctttgtacacactcattgcaggatgtgatacctgaaaccaaaacaaaacatatgtaagccctaataatgcagacatcaacttcaaca  155300                                           <---------ANAC58                                           <---------ANAC58                                     -----               <---------KAN4(2)          --------->ZAT2                                        -----         ---------->DOF2                  <---------ZAT2                                     <-------       --------->CCA1(2)                  --------->At4g35610                      --------->YAB1    <---------TOE2(3)                 ------->TEIL              --------->ANAC58   <---------ICU4 ----->At5g28300                 <---------At4g35610            --------->ANAC58  <---------ATHB12 ------>GT1 ----------->GT1      --------->At4g35610         --------->WRKY18(1)  <---------ATHB51---   gtgaataagataaaaggaataaacagagaaattacagatgaaccagcttgcccttggcattcgctcaagcttcgatagacaccaataatgtctcccttac  155400                                                              <---------ARR11(3)                                                              --------->ARR11(3)                                                              --------->ARR14(2)                                                              <---------ARR14(2)          --------->ANAC46                     ------->GAMYB  <-----------ARR10          --------->ANAC58                     --------->TOE2(3)          --------->ANAC58                     --------->TOE1(3)      <------ZmHOX2a(1)   ----------->GT1                           -------->P    <---------ALFIN1 ---->ANAC58                               --------->AtMYB61  <---------ARR11(1)             -------- ---->ANAC58                              <---------ATHB12--------->LBD16                   <-------- --MYB52(1)  ------->TEIL ------>ZmHOX2a(1)--------->MYB46(3)<---------CCA1(2)        --------->LBD16 ------>ANAC46  <----------DOF2     <---------PCF2 ---------->DOF2 <---------LBD16   --------->LBD16   gcacaatgtaaaacgcatctttttcatcctccattgtggaacccatcaaccctaaaatcccccaaatcttcaggaatcaacaaaaccccgagttatcaaa  155500                                                                                 <---------ARR14(2)                                                                                 --------->GLK1(2)                                                                                 --------->ARR14(2)                                                                                <---------GLK1(2)                                                                              --------->LBD16       -                                                                             --------->HSFB2a(2) ----                                                                             <---------HSFB2a(2) ----                       --------->MYB52(1)                                 --------->ARR11(3)     ----                  --------->ANAC46                                        <---------ARR14(2)     ----                  --------->ANAC58                                        --------->ARR14(2)     <---               --------->TOE1(2)                                          <---------ARR11(3)     ----               --------->TOE1(3)                                          --------->AGP1       <-----               --------->TOE2(2)      ------>MYB46(1)      --------->ANAC58<------ZmHOX2a(2)  <------               --------->TOE2(3)      ------>MYB83         --------->ANAC58--------->CCA1(2) -------- --------->ANAC46 --------->ANAC58  <---------MYB59      ---------->DOF2 --------->GLK1(1)--------->ANAC58 ->YAB1--------->TOE2(3)            <---------MYB46(2) --------->LBD16   <---------GLK1(1)--------->ANAC46 -YAB1 --------->TOE1(3) <---------MYB52(2)          <---------LBD16  ------->GAMYB       --------->ANAC58   atcacagaaccctaaaacctaagccaaacgaacaaataccaaactaaaacaagtccccagaaagcaattcaacagagatccagaatccgaacaggcaaca  155600 ------>TEIL ----->ANAC46 ----->ANAC55(2) ----->ANAC58                                    *TSS   --------->AtLEC2     --------->AHL20(2) ----->ANAC58                                   <----------DOF2  ------->GAMYB ------ANAC55(2)         <<<<<<<<<MYB2        --------->ZAT18   <---------MYB52(2)                --- ----->ANAC55(1)       <------MYB83           --------->ZAT14   --------->MYB46(3)               <--- ----ALFIN1            <------MYB46(1)        <---------ZAT14 --------->MYB52(1)                 <--- ---REM1(2)        <---------ARR14(2)         <---------ZAT18--------->MYB46(3)                  <--- --->RAV1(1)       --------->ARR14(2)   --------->TOE2(3)  ----------->RAV1(1)                   <---   cgcatcgagcgagagagagacgatttggttttcgaatttcaaacttagtgctcttgcgatgcaacaacggaccacgagaaaaaatatgtagatgggcttc  155700          ------------>CBF      --------->DAG2                                                                      <---------ZAT6     ---------->DOF2                   --------->ANAC58                                 <---------ANAC46 ------>LBD16                      --------->ANAC58  <---------SPL7                  <---------MYB52(1) ------ANAC58                      --------->ANAC58 <---------ANAC58                <---------RAP2.6(3) ------ANAC58           <---------TOE2(3)           <---------ANAC58               <---------ANAC46 - ------ANAC46          <---------At5g28300         --------------->AtSPL3          --------------->AGL15 ------ANAC55(1)      <-----------GT1  --------->ANAC58         --------->ANAC46  ----------------->AGL1   cgtgtgaaaaagcccaatagaatattacggtttcaacacgaacgaaactacttgccgttccatttcacacaaataaaactacttgccgtttagtggaaat  155800               --------->ANAC58               --------->ANAC58           <-----------GT1                                               <---------At4g35610      --------->ARR11(3)                                         <---------AHL20(2)      --------->AHL20(1)                                         --------->AHL20(1)      --------->AHL20(2)                                         <---------AHL20(1)      <---------AHL20(2)                                        --------->AHL20(2)                 --      <---------AHL20(1)         --------->ANAC46               --------->YAB1            ------>ZmHOX2a(2)      <---------ARR11(3)<---------ZAT18           --------->TOE1(2)      --------->At4g35610       <-   --------->AHL20(2) --------->ANAC46    <---------YAB1       <---------ATHB12         --------->ARR11(3) -------->TOE2(3)   <-----------GT1    <-------TEIL   <---------GLK1(2)<-----------GT1  <---------ARR11(3)   tacattaatatattcacaagttatactccacttacacaaaattcatgagtaacctagaatttccaattatattttagcagcctgaatattgatctctcta  155900               <---------YAB1             --------->ATHB51             --------->ATHB12             -------->ATHB1             <---------ICU4             <--------HAHB4            <---------YAB1            --------->ICU4          <---------ICU4        <---------TOE2(3)           --------->ANAC55(2)                               --------->ANAC46  <---------AHL20(1)                <---------ANAC55(2)                           --------->CCA1(2)  --------->AHL20(1)               --------->MYB59                               <---------AHL20(1) <---------AHL20(2)          <---------YAB1                                      --------->AHL20(1) ------->AHL20(2)          --------->ATHB12     ------>ZmHOX2a(1)                <---------ARR11(3) --------AHL20(2)     <---------TOE2(3)   <-----------GT1              <---------REM1(1)           --   tatatatattaagaattattagttatggattattagttaagtatttactcctaagttaagctctatacttgagttgtagtcaatatataaggcagataga  156000                                                                                                  ---                                                                                                  <--                                                       --------->YAB1                             ---                                                       <---------ICU4                            ----                                                       -------->HAHB4                      --------->AHL20(2)                                                      <---------ATHB51                    --------->AHL20(2)                                                      --------->ICU4                 <------ZmHOX2a(1)                                           <---------ANAC58                         ----------->GT1       ---------->DOF2        --------->ANAC46      --------->YAB1            --------->ZAT14    ---- --------->GT1              <-----------GT1<---------ANAC58                   <---------ZAT14  <-----   tttgtaacttaaaccccaagaacacgatttatacgaatcaagttttcttgacattaataatgaaacaagtacttaagtactgtagtaggaaaataaaaaa  156100  Previous    Next  AGI:  At3g01410.1    Description:  RNase H domain-containing protein. similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G24090.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14821.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Ribosomal protein L9 N-terminal-like (InterPro:IPR009027) Range:  from: 153363    to: 155649    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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