Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      ------>NtERF2                                                 <---------LBD16                                                 --------->SPL7                                               --------->ARR14(2)                                               <---------ARR14(2)                                               <-----------HVH21                                      <---------CCA1(1)                         ---------->DOF2    <---------ANAC58                     <---------AHL20(2)     <---------ANAC58                                   <-----                   <---------YAB1     <---------RVE1(1)                                      -------- ----->ARR11(3)   <---------AHL20(2) <---------ARR11(3)                           <-----------GT1<--- ---->GLK1(1)   <---------YAB1       --------->ARR11(3)                 ---------->DOF2   <----------   ttcttgataaatgggcctattattttaaaaagcccaatagatatttgagtgtccggcccaaattgaagtagaataaaagataagttaccaatttaccagt  106300                                                                  <----------DOF2                                                                  <---------DAG2         --------->KAN4(2)                                                                 <---------DAG2         --------->HSFB2a(1)     <---------At4g35610                                       --------->LBD16          <---------HSFC1(2)  --------->At4g35610                                          ------>NtERF2            <---------HSFB2a(1)  <---------At4g35610                                         --------->ANAC46 ------>ZmHOX2a(1) ----MYB52(1)        ----------->GT1                  --------->RVE1(1)       --------->TOE2(3) ->ZAT6             --------->DAG2                   --------->ARR11(3)      ----------------->AGL1 ------MYB46(3)    ---------->DOF2                   <---------ARR11(3)    ------>ZmHOX2a(1)    <---- -GT1--------->At4g35610                             --------->GLK1(2) <-----------GT1  --------->HSFC1(2)   agttagcagcaaacacacagagaaagtgaaacatcgaagagaccccagaatgcaaaatctctctccgcctttttctccttccttattcgaaaattctcag  106400                                                                                          -----------                                                                                      --------->YAB1                                                                                     <---------YAB1                                                                                    <-----------ARR10                                                                                --------->ZAT6   <-----------RAV1(1)   <-----------GT1                                        --------->YAB1 <----------DOF2------>ZmHOX2a(1)                      <---------ANAC58        <---------ATHB12 -----At4g35610 --------->At4g35610                    <---------ANAC58      ------>ZmHOX2a(1)   cgtctttgttgcaaactcctctgaaattctccgtcttcttcattcgttttcgactctgcgttctactacttctcgtctcctatcagtatcatcgcaattc  106500                                                   ------>ZmHOX2a(1)    <---------MYB52(1)                                               <-----------GT1         --------->LBD16                                             --------->HSFC1(2)       <---------DEAR3(1)                                             --------->HSFB2a(1)      <---------ATERF1(2)                                             <---------HSFB2a(1)      --------->ATERF1(2)                                          <------NtERF2               <---------DREB2C(2)                          --------->ARR14(2) <---------HSFC1(2)      <---------ANAC46                          --------->GLK1(2)<---------GLK1(2)         <---------LBD16                   <---------LBD16       --------->LBD16          <---------WOX13(1)           ------            ----------->GT1             --------->LBD16          <------------CBF          <---------TOE2(3)      --------->ZAT14     <---------ARR14(2)<---------KAN4(2)   --------->ATHB12          <---------- ->CBF<---------ZAT14--------->LBD16   <---------LBD16         <---------YAB1 ---------->DOF2 <------   atattcagtctagtgtgttaaaccggagaatttggagtctcgccggaattttcctctgtctatgtatgattgccggtgatcaaagcgcttcttaacgatt  106600                      <-----------ARR10                      <---------ARR14(2)                      --------->GLK1(2)                ------>ZmHOX2a(2)               <------ZmHOX2a(2)               --------->CCA1(2)              <---------AGP1              <---------ARR14(2)              --------->AGP1                                                                   <-----              <---------ARR11(3)                                                            ---------              --------->ARR14(2)                                ---------->DOF2             <--------              --------->ARR11(3)                              *TSS   --------->MYB59       <---------LBD16 --->GLK1(2) <---------GLK1(1)                     <---------HSFB2a(2)<------MYB46(1)     =========== -GT1 <----------DOF2 --------->ARR14(2)           --------->HSFB2a(2)<------MYB83        ------>ZmHOX2a(1) ---GLK1(2)  --------->GLK1(1)   <---------At4g35610      <---------ZAT6              <-----------GT1   ctgttctcctttgagagatctgagtatctgatttcatctactacatatgttttctcgagagtgatagaaagtaggtctcatacatatttttcctctggag  106700                        --------->AHL20(2)                   <---------MYB52(1)                  --------->TOE2(3)                     ------->TEIL          ------>ZmHOX2a(1)                             <---------ARR14(2)        ------>ZmHOX2a(2)<-----------GT1        --------->CCA1(2) ----ANAC46      ----------->GT1          <---------ARR14(2) >HSFB2a(2)  --------->At4g35610      <---------At4g35610      ----------->RAV1(2)                <-- -HSFB2a(2)  <---------At4g35610   ---------->DOF2      --------->ARR14(2)                        --- ==============HOX2a_HOX2a        <---------REM1(1)  <---------ANAC46                 ------>ZmHOX2a(1)   ggaattttgatcctctgcttcgttaattaacttgtgatgaagcggataagagatgatgtatatgcctctgggtctcaatttagacgtcctcttggttctt  106800                                                                           <------MYB83                                                                           <------MYB46(1)                                                                <-----------RAV1(1)                                                             <---------MYB52(1)     <---------YAB1   ------>NtERF2                                   ------>ZmHOX2a(2)      <---------TOE2(3) -------HSFB2a(2)                                <---------ARR11(3)       --------->MYB59   <-------- ------>HSFB2a(2)          <-----------GT1       --------->ARR11(3)  <---------ANAC46--------->YAB1--   ctcgaggccaattgtgagtttctctaaattcacccttcaaatttcggttttgatcttggttctgttttgtggcgattaggttttctataattctgcatgg  106900                                                                                          --------->ALFIN1                                                                   <---------ETT(2)       <---------AtMYB61                                                               --------->ARR14(2)     <---------ZAT14                                                               <---------ARR14(2)     --------->ZAT14                                                              --------->At4g35610   --------->ANAC46                                                              <---------At4g35610   --------->bZIP60(2)                                                            <-----------RAV1(2)     --------->ANAC58                                                           <---------ZAT18          --------->ANAC58                                                        <---------ANAC58           <---------LBD16                                                        <---------ANAC58         <---------WRKY12                                                        <------MYB83             --------->ETT(2)  --                                                        <------MYB46(1)          <---------ETT(2) ---                                                       --------->MYB111(1)       <---------WRKY38(1)                                                       =================RAV   --------->LBD16-------- -AtLEC2                     <---------ZAT6        --------->ATHB12--------->ZAT18<---------ALFIN1--- --------->GT1   <---------YAB1   --------->ANAC55(2)  <-----------RAV1(1)  <---------LBD16<---------MYB46(3)   agagtgacaaatatttgttatgaattgagtagttttaagtaatcgattagagatgatttggtgcagatgtggacaatctccggtccacggcagtggtgac  107000                                                                 <---------SPL7                                                          <---------ANAC58                         <-                          <------NtERF2                   <---------ANAC58                        ===       >>>>>>>>>TBF1     --------->LBD16              --------->YAB1         ----------->GT1      <--    >>>>>>>>>TBF1      --------->ATERF1(1)           <---------ATHB12  --------->MYB52(1)        <--- ------->DEAR3(1)      <------NtERF2                 --------->ICU4 ----------->RAV1(2)          <--- ------>ANAC58        <---------ATERF1(1)        --------->MYB46(3)------->TEIL        --------->ARR11(3) --->HVH21>>>>>>>>>TBF1<---------LBD16          --------->ANAC58<---------ANAC58       <---------ARR11(3) ------>ANAC58  <------ZmHOX2a(1)               --------->ANAC58<---------ANAC58 ---------->DOF2 ----   accgaagaagaagaagaaggagggagccggagagtctctcagaaattgacaaccaatgatgcgttgtcgtacctgagggaagtaaaagagatgtttcaag  107100             ----------->HVH21             <---------YAB1  --------->ANAC46 --------WRKY12 ==============================HOX2a_HOX2a   <---------TOE1(3) ----ZmHOX2a(2)                  <---------YAB1      <---------TOE2(3) --------ARR10          ------>ZmHOX2a(1)    <---------TOE2(3)                             --------->ANAC58 ------ARR11(3)     --------->ARR14(2) --------->ARR11(3)      <----------DOF2             --------->ANAC58 ----->ARR11(3)     <---------ARR14(2) <---------ARR11(3)  <---------At4g35610     ---------->DOF2   atcaacgcgagaaatatgacaggttcctcgaggttatgaaagattttaaggctcaaaggttagctctttcactctctatcgacttcaaagttcaagtaag  107200  Previous    Next  AGI:  At3g01319.1    Description:  unknown protein Range:  from: 106303    to: 106443    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g01320.1    Description:  similar to paired amphipathic helix repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G70060.1); similar to ATSIN3/SIN3 (Arabidopsis thaliana sin3 homolog) [Arabidopsis thaliana] (TAIR:AT1G24190.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G15020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40976.1); similar to hypothetical protein OsJ_000071 [Oryza sativa (japonica cultivar-group)] (GB:EAZ10246.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14871.1); contains InterPro domain Histone deacetylase interacting (InterPro:IPR013194); contains InterPro domain Paired amphipathic helix; (Int Range:  from: 106662    to: 113625    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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