Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   <---------ANAC46 <---------ANAC58 <---------ANAC58                               <---------ANAC58     --------->YAB1 ------>ANAC46                       --------->GLK1(2)            --------->YAB1 ------>ANAC58            ------->MYC3          <---------ANAC58--------->ZAT14 ------>ANAC58            <-------MYC3  <---------YAB1     --------->ZAT18 ---->ANAC46--------->ANAC58     <---------AHL20(2)     <---------ANAC58 -----ALFIN1--------->ANAC58     --------->AHL20(2)     <---------ANAC58   acggcttgtttagcaagaaacatttccacgtttaaaaaaattctgtttatgcgtttttgtttgcgctatagtcataagaatgggttttctcgttgttaaa  103900                                                                                              -------                                                                                       --------->ATHB12                                                                                       <---------AHL20(2)                                                                                      --------->AHL20(1)                                                                                  <---------ARR11(3)                     <---------ARR11(3)                                         --------->ANAC58                     --------->ARR11(3)                              <---------ANAC58 <---------AHL20(1)       --------->ARR11(3)            ----------->GT1       --------->ARR14(2)   --------->ANAC58   --       <---------ARR11(3)        ---------->DOF2    <---------YAB1   <---------ANAC58 <---------AHL20(2)      --------->RVE1(1)    <----------DOF2    <---------TOE2(3)      <---------ANAC46 --------->AHL20(2)      --------->CCA1(1) <-----------GT1    <---------YAB1  <---------ARR14(2)   --------->ANAC46   <-   catttgaaatatctcttgggcaagatttactttgtcaaagtgtttataaatgttatcaatggatttggatgccttgtttttcaagaaatttattgaaaaa  104000                                                                      <------NtERF2                                                                     --------->ABI4(2)                                                                     ------>NtERF2                                                                     <---------ATERF1(1)                                                                     <---------MYB46(3)                                                                    <---------DEAR3(1)                                                                   --------->ATERF1(1)                                                                  <---------DEAR3(2)                                                                  <---------ATERF1(1)                                                                 <---------ATERF1(2)                                                                <---------LBD16                                                                <---------------------WRI1                                                          <----------DOF2                                                          <---------DAG2                                                         <---------DAG2          --------->ATHB12          <-----------ARR10  ------>MYB46(1)--------->ATERF1(1)   ------>ZmHOX2a(1)          <-----------GT1          -------->P<---------DEAR3(1) --------->YAB1          <---------ANAC58            <---------MYB46(2)                    <---------YAB1 --->DOF2<---------YAB1  <---------ANAC46            <---------MYB59--------->ALFIN1    ------->TEIL< ------->GLK1(2)         <---------ANAC58            <---------MYB111(1)         <------ZmHOX2a(1)<-- --------ARR14(2)   ----------->GT1 --------->ARR14(2) ------>MYB83<---------MYB52(1)--------->ICU4 <   gaatcctaattttgatttgagatggtttcttgtaacccaatctcccctagataaacctaccttttcgccggtggctccaaggaggaaatgaatattagtg  104100                                                                                                 ----                                                        ------>ZmHOX2a(2)                       <----                                                       <------ZmHOX2a(2)                       ------                --------->MYB52(1)                    --------->ARR11(3)                       ------               ----------->HVH21                      <---------ARR11(3)                       <-----              --------->LBD16                      <-------TEIL                                ------             --------->ANAC55(2)               <---------------AtSPL3                          <-----             <---------ANAC58                  --------->LBD16--------->DEAR3(1)               <-----   --------->MYB59                            <-----------RAV1(2)                            --------   <---------TOE2(3)                         ------>ZmHOX2a(2)------->GAMYB                ------>NtERF2   --------->DAG2     <----------DOF2       <------ZmHOX2a(2)--------->MYB46(3)           ----------- ---------SPL7<---------RAP2.6(3)          --------->ARR14(2)--------->DEAR3(2) <-----------RAV1(1) -------ANAC46--------->At5g28300          <---------ARR14(2)<------------AtMYB77        --------->LBD16 ------NtERF2<---------ANAC58     <------ZmHOX2a(2)--------->SPL7        <---------ZAT6  ------>NtERF2   gcggtaaggtatttgccgtaacagctttgaagacggatcacattggatccaggtacgatctcaaccgtccatctagtgttttttgttgtgccgcgacgat  104200         --------->ARR14(2)         <---------ARR14(2)     ------->TEIL    --------->MYB52(1) -->ZmHOX2a(2)                                                                       <-----------GT1 --ZmHOX2a(2)                                                                      <---------ARR11(3) --->ARR14(2)                                                             <----------DOF2        ---- --->ARR11(3)                    --------->ANAC55(2)          <-------TEIL--------------------->WRI1 ----ARR14(2)                   --------->MYB59            <---------ANAC46        --------->ARR11(3) --->ARR14(3)                   <---------TOE2(3)    <---------ANAC46   <---------ANAC58     <------- ----ARR14(3)     ------>ZmHOX2a(2)            <---------ANAC46         <---------ANAC58     -------- ----ARR11(3)   --------->ARR11(3)         <-------GAMYB  <-----------------------TaNAC69(2) -------- --->ARR10      <---------ARR11(3)       ---------->ID1   --------------->AtSPL3  --------->CCA1(1) >HVH21  <---------GLK1(2)      <---------TOE2(2)   <---------LBD16<---------ICU4 --------->RVE1(1)--   cttgatgaacggattcttgatcttcatcggcacttaggtatttgtcgttgtggctacggagacgtacaatcgttgcctttctaaatatctccatccgaga  104300           <----------DOF2        ------>ZmHOX2a(2)      --------->ARR11(3)      <---------ARR11(3)     <---------ICU4     --------->YAB1    --------->ICU4  --------->YAB1  <---------ICU4 <---------ATHB51                ==========================HOX2a_HOX2a --------->ICU4                  <------ZmHOX2a(1)------->TEIL <---------ATHB12        <---------TOE2(3)        --------->ARR11(3) -------->CBF      <---------AHL20(2)             <---------ARR11(3) --HSFB2a(2)       --------->AHL20(2)    --------->DAG2 ->HSFB2a(2)   --------->HSFB2a(2)     ---------->DOF2        <---------YAB1                        < ->LBD16================================HOX2a_HOX2a ------>ZmHOX2a(2)    --------->YAB1             - ------->YAB1  <---------HSFB2a(2)<----------ID1  <---------AGP1     <---------YAB1   <---------TOE2(2)   acaataatgatctctttctaaaaaattaagaattaggagacaaaaggggatggatctataagttattcttcattatcgtgatgcaacgtaggctaatatg  104400                                                           <---------MYB46(3)                                                           ----------->GT1      <---------At4g35610                           <---------DOF5.7(2)      ----------->RAV1(2)                         <---------MYB52(1)    <---------WRKY18(1)                           --------->DOF5.7(2)   --------->WRKY12                              --------->TOE1(3)                       <-------GAMYB   --------->WRKY38(1)                         <---------TOE1(3)                        --------->MYB52(2) <-------GAMYB                  --------->ATHB12 --------->TOE2(3)                      <---------MYB46(3) ---------MYB46(3)            <----------DOF2  <---------TOE2(3)          ------>ZmHOX2a(2) -------->MYB52(2)    <---------AHL20(2)  <----------DOF2  --------->MYB52(2) <-----------HVH21   gtttgttgacctgagtcttgttttttaattcgcttgatttgagtcttttatcgttaatggtttgttatatgtttgatccatgtcaaaagtttgttgaacc  104500                                                                                               <-----                                                                                               <-----                 <---------GLK1(2)                                                             ------        >>>>>>>>>ARR1                                                         --------------->AGL15        <------------CBF                                        --------->GLK1(2)   <---------WOX13(1)        >>>>>>>>>ARR2                                          <---------GLK1(2)<---------MYB52(1)        >>>>>>>>>ARR2                                          --------->ARR14(2)<---------AHL20(2)        >>>>>>>>>ARR1                                          <---------ARR14(2)--------->AHL20(2)       <------ZmHOX2a(1)       --------->GLK1(1)             ----------->ARR10<---------------AGL15      <---------YAB1          <---------GLK1(2)       --------->LBD16 ------->TEIL--------->ATHB12   gtgggattaggattgttcagattataagaccagatttctaaatagtatgacaactccgaagaccagattctgaacctcttccattaattgaactatttgg  104600                                                                                    --------->HSFB2a(1)                                                                                    <---------HSFC1(2)                                                                                    --------->HSFC1(2)                                                                                    <---------HSFB2a(1)                                                                                   --------->ARR14(2)                                                                                   <---------ARR14(2)    --------->WOX13(1)                                                             ------->TEIL  ----   <---------AHL20(2)                                    ------->TEIL              <---------ARR11(1)   --------->AHL20(2)                                  <<<<<<<<<EIN3               <-----------ARR10  --------->AHL20(2)                               <---------WRKY38(1)            <---------ARR14(1)  <---------AHL20(2)                               <---------WRKY12               <---------CCA1(2) -MYB46(1)                                        --------->WRKY18(1)      <---------YAB1  <xxxxxxxxx -MYB83                                          --------->At5g28300     --------->YAB1   <---------At4g35610 ----->GT1                   <---------YAB1  <---------DOF5.7(2)      <----------DOF2     --------->At4g35610   ttaaataaatcaaactgttctatttgtttctatgattccatctctgtaaacggtcaatgtatatgtgtgagtcttttataattcgaatcttctgctcaga  104700                                                                         --------->At4g35610            <---------YAB1                                            --------->ZAT14       <---------AHL20(2)                                             --------->LBD16      --------->AHL20(1)                                       <---------ICU4      <---------AHL20(1)                                  <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      --------->AHL20(2)                  <---------TGA1a --------->AHL20(2)*TSS      <---------AHL20(2)               ----------->HVH21<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    ------->TEIL                 --------->ZAT14       --------->YAB1--------->DEAR3(1) ----->CCA1(2)             --------->GLK1(2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  -------- xxxxxxxxsmallRNA(se3)    <---------GLK1(2) ----------->GT1    --------->YAB1>>>>>>>>>TBF1   --------   tatatgaatttattctcatagattacaagaatctctgaagtctgacatgtgaatttctcataaaatcatcaccgcagaagaagaaattatccaaaacgaa  104800  Previous    Next  AGI:  At3g01311.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28630.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28630.1); similar to unknown [Populus trichocarpa] (GB:ABK94560.1); contains InterPro domain Protein of unknown function DUF569 (InterPro:IPR007679); contains InterPro domain Actin-crosslinking proteins (InterPro:IPR008999) Range:  from: 103050    to: 104294    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g01313.1    Description:  snoRNA. snoRNA Range:  from: 104694    to: 104776    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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