Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         <---------ATHB12                               <---------ICU4                               --------->ATHB12                               --------->YAB1                               -------->HAHB4                                <------MYB83                              <---------YAB1                                 <------MYB46(1)                              <---------ATHB12                            <---------MYB52(1)                              --------->ICU4                    --------->ANAC58                             <---------TOE2(3) ----------->GT1  --------->ANAC58 -------->YAB1              --------->YAB1--------->ANAC58      <----------ID1<------ZmHOX2a(1) -AtLEC2              <---------MYB52(1)  --------->ANAC58 --------->ANAC46<--------P           <----   aatcagaataaactaatccaaaccgttctctaatgattacaatcaagcctggttaatttcaacgagacgacaaatcggtaggattcaaaaacaatgcata  84500                                                           ------>ZmHOX2a(2)                                                          <------ZmHOX2a(2)                                                    <---------ETT(2)                                                    <---------WRKY38(1)         --------->ANAC58                                                    <---------DEAR3(1)          --------->ANAC46                                                    <---------WRKY12            --------->ANAC58                                         ------->PIF5    --------->ARR11(3) --------->YAB1                                         <-------PIF5    <---------ARR11(3)<---------YAB1                               <---------ICU4       --------->ETT(2)    <------NtERF2        <---------ARR11(3)  --------->ANAC46    <---------AtMYB61     --------->ETT(1) -----ARR14(2)              --------->YAB1      --------->ALFIN1     --------->ALFIN1   tatagatcgagatactaatatttgacttactcgtaatgacgctcgtggaagtggtcgacgatctcataagggtcgggatgataagccataagggtatgtt  84600                                                      <---------ANAC46                                                --------->ATHB12                            ---------                                              ----------->RAV1(1)                           <--------      --------->ATHB12   --------->ARR14(2) --------->At4g35610 --------->ETT(1)            ---------     <-------TEIL    --------->ANAC46      --------->ANAC46<---------TOE1(2)       <---------ANAC55(2)    <----------DOF2<-----------GT1       --------->At4g35610<---------AtMYB61      --------->ANAC55(2)   tacgagcttcattggccttgtttacccaatactcatcggtctcatcagcaacattggctcgtatggtcggaatcaaactggcaatacatatcacacacac  84700                                                             <---------ARR11(3)                              <---------AHL20(2)             --------->ARR11(3)                         <---------AHL20(2)       --------->LBD16                         <---------AHL20(1)      <---------ANAC55(2)                ----------->GT1                <---------ATERF1(1)              --------->ANAC55(2)<---------AHL20(2)     ---------->DOF2     --------->AHL20(2)     <---------LBD16     --------->AHL20(2)            <-- >ANAC58        <---------RAP2.6(3)         <----------DOF2 --------->RVE1(1)   --------->DAG2    --- -ALFIN1       --------->RAP2.6(2)      <----------DOF2     --------->CCA1(1)  ---------->DOF2    --- >ANAC58       --------->DEAR3(1) <-----------GT1--------->ANAC46   <---------AHL20(1)         ------   taatttgaaaagcctagccgtctccattttatttgattacccctttcttttacggaaaacaaatatctattttattttttaaaaaggggtaatcttttta  84800                                                                                          --------->YAB1                                                                         <----------DOF2------->TEIL                                                                        <---------------AGL15                                                                        --------------->AGL15                                                      <-----------GT1  <-----------------AGL2                                                  <---------MYB52(1)   <-----------------AG                                                <---------MYB46(3)     ----------------->AGL1 -------AHL20(1)                   --------->YAB1<-------GAMYB         ============================== ------>AHL20(1)  --------->ARR14(2)            ----------->GT1    ---------->DOF2 --------->At4g35610 ------>ARR11(3)  <---------ARR14(2)     <----------DOF2         <---------MYB59   <---------At4g35610 --->AHL20(2)--------->ALFIN1<----------DOF2--------->MYB59   <---------WRKY18(1)<--------P   tatattgaaatatatgtggagaactgctaagctttaaacatagctttaggtcgttatttctgtttgacctaaagccttttttggtagatgaatcgtattg  84900                                   --------->YAB1                                   -------->HAHB4                                  <---------YAB1                                  ----------->GT1                   <---------------AGL15                                <---------ICU4                      --------------->AGL15                                --------->YAB1                     <-----------------AGL2                               <---------ATHB51                    ----------------->AGL2                     <------MYB83 --------->ICU4                   ----------------->AGL3                     <------MYB46(1)                         --------->ZAT18                    <---------AtMYB61                        <---------ZAT14                 <-----------RAV1(1)                         <---------ZAT18                <--------                ------->TEIL   <---------AHL20(2)            --------->ZAT14                <--------             <---------YAB1--------->AHL20(2)           ---------->DOF2    ----------->GT1  <--------    *TSS   --------->YAB1  <---------AHL20(2) ----------->RAV1(2)  <-----------------AGL3<---------MYB52(1) ===================================================================================MADS_MADS      --   cgaagtttgacaaacatgaatgttggtgtttaaataatgataaaaaaaacctggtgaagaaagtgaactactatatttagaaaaatttcccgttatgtat  85000                                                                                                 <---                <---------ANAC58                                                       --------------                <---------ANAC58                                                       ------>ZmHOX2a(1)          --------->AHL20(2)                                                           <-------------     ------>NtERF2                                                                    ---------------     ----------->RAV1(1)                                                              <--------------    --------->RAP2.6(2)     <----------DOF2                                           =============== --------->ANAC58         <---------At4g35610        --------->AHL20(2)               --------------- --------->ANAC58    --------->ZAT18                 <---------AHL20(2)               <-------------- -ANAC55(2)   <---------AHL20(2)                 <----------DOF2                      <-------------- -YAB1 --------->YAB1--------->ETT(2)    <----------DOF2   <-----------GT1            =============== -ANAC46  --------->ATHB51--------->At4g35610 <-----------GT1                         --------------- -------->DOF2<-----------GT1   <----------DOF2---------->ID1                   --------->MYB52(2)   ggaaagccaccataatttacttgtggacagctttctttgttttctttttttctttttaattttacatctccttgttttttgttcgtttcctatatttgga  85100 ------CCA1(1)                                             --------->DOF5.7(2) ->AGL15                        <---------------AGL15    <---------ANAC58 --AGL15                        --------------->AGL15    <---------ANAC55(2) >AGL15                        ----------------->AGL2    <---------ANAC55(1) ---AG                 --------->ATHB12       --------->ANAC46 ===============================================MADS_MADS<---------ANAC46 -->AGL2              <---------YAB1          --------->ANAC58                    ---------->DOF2 ---AGL2           --------->ICU4             --------->ANAC58         --------->ICU4           <---- ---AGL3         --------->YAB1----------------->AGL3    <---------YAB1<---------YAB1  ----------->GT1 ===============================================MADS_MADS<---------ANAC58    ------->TEIL<---------ZAT6 -->AGL3        <---------TOE2(3)         ----------->RAV1(1)        --------->YAB1--------->DAG2   tatttctatggagagactaacattatgatttcgaccaattttagcaacaagaaacaattacgtttacattctcatgatgcatctaaaagtagtgaaaatg  85200                                                                              <---------RVE1(1)                                                                              <---------CCA1(1)                                                                             --------->ARR11(3)                                                               <---------At4g35610                                                               --------->At4g35610            <---------ZAT6     ------->GAMYB                  --------->RAP2.3(2)      <----------DOF2       --------->MYB52(1)              <---------At4g35610     <---------ANAC46    --------->YAB1                     --------->At4g35610     <---------ANAC58    --------->TOE1(3)                 --------->ANAC46  <---------ARR11(3)     <---------ANAC58    --------->TOE2(3)   <---------ATHB12 --------->RAP2.6(2)     <-------------- -------HVH21           ----------------->AGL1  --------->DOF5.7(2)<---------STY1(2)  ---------------   tcagactgcttgtagtataaattgctaccataacggagacttgactaatcgtttactatatcagccgctaactagttgggatatttttctgaaaatagtt  85300                 <---------YAB1               --------->YAB1               <-----------GT1                             ---------->DOF2                         --      <---------ANAC55(2)                                  --------->MYB52(1)               ---------      ----------->GT1  <-----------GT1                  --------->YAB1                      <-------- -AGL15     <---------ICU4                     <---------ICU4  <------ZmHOX2a(1)           --------->ICU4 >AGL15    --------->ICU4 --------->AtMYB61    --------->YAB1<---------TOE2(3)             <---------ATHB12   tgataaatatgtaaaaatcacgatttcaccatcacattcgattactcattcatgactaaaataaaggatgaaatagctaaatttatgcgactaatcatca  85400  Previous    Next  AGI:  At3g01270.1    Description:  pectate lyase family protein. Identical to Probable pectate lyase 7 precursor [Arabidopsis Thaliana] (GB:Q9SRH4;GB:Q8LGC8); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G15110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41040.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Pectate lyase/Amb allergen (InterPro:IPR002022); contains InterPro domain Pectate lyase, N-terminal; (InterPro:IPR007524); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 82692    to: 84904    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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